Glyma12g34550 - SoyBase

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Report for Sequence Feature Glyma12g34550

Feature Type:	gene_model
Chromosome:	Gm12
Start:	37723595
stop:	37725641
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma12g34550

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G25610	AT	Annotation by Michelle Graham. TAIR10: BURP domain-containing protein \| chr5:8914498-8916684 REVERSE LENGTH=392	SoyBase	E_val: 1.00E-30	ISS
GO:0009269	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to desiccation	SoyBase	N/A	ISS
GO:0009409	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cold	SoyBase	N/A	ISS
GO:0009651	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salt stress	SoyBase	N/A	ISS
GO:0009737	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0005768	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endosome	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0005802	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: trans-Golgi network	SoyBase	N/A	ISS
GO:0045735	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nutrient reservoir activity	SoyBase	N/A	ISS
PF03181	PFAM	BURP domain	JGI		ISS
UniRef100_Q06765	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: ADR6 protein n=2 Tax=Glycine max RepID=Q06765_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q06765	UniRef	Annotation by Michelle Graham. Best UniRef hit: ADR6 protein n=2 Tax=Glycine max RepID=Q06765_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma12g34550

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma12g34550

Paralog	Evidence	Comments
Glyma13g35970	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma12g34550 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.12g217300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma12g34550

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma12g34550

Limit To All Plant Sequences

>Glyma12g34550.6   sequence type=transcript   gene model=Glyma12g34550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTACAATCTCTAAACTCCACTCCCAGTAAAAGTACAATTCATTTACGTCTGGTCTTTTTCAACGGTAAACACTCCAAAGAGTCCAATATCTAGTCACTATAAATGTCATCATCCCCGCAGGAGTTGGGATCACAAATCTTTCGCTAACACTCATTAATTGCAAGAATGGCACTTCGTTGCTTGGTGATGTCCCTTTCTGTTCTCTTCACTGTGTTGAAATCGATGATCACCCTATGCAAATTGAAGAAACACAGTACCCGAAAACCTTCTTCTATAAAGAAGACCTTCATCCAGGCAAAACAATGAAAGTACAATTCAGCAAGCCTCCCTTTCAACAACCATGGGGTGTTGGTACATGGTTAAAGGAAATTAAAGACACTACTAAAGAAGGATATAGTTTTGAAGAGCTATGCATCAAGAAAGAAGCCATTGAGGGAGAAGAGAAGTTTTGTGCAAAATCCTTGGGAACAGTAATTGGTTTTGCCATTTCAAAGCTGGGAAAGAACATTCAAGTACTTTCAAGTTCCTTTGTCAATAAGCAAGACCAATACACTGTGGAAGGAGTGCAGAATCTTGGAGACAAAGCAGTGATGTGTCATAGGCTAAATTTCAGAACTGCAGTATTTTACTGCCATGAAGTCCGTGAAACAACAGCTTTCATGGTTCCATTGGTGGCTGGTGATGGAACCAAAACTCAGGCACTTGCTATTTGCCACTCAAATACTTCTGGAATGAATCATCAAATGCTTCATCAACTTATGGGAGTTGATCCTGGAACTAACCCTGTTTGCCATTTCCTTGGAAGCAAGGCCATTTTATGGGTACCCAATTTATCTGTGGACACTGCCTATCAGACCAACATTGTTGCTTAATTAGTCCATGCATCTTGAGCACCATGAGAATGAGATTGTGTATAAAATAAATTATCATGTGCTGTGTGTTGTGCAAGTACTACCTTCTCTAGCTAGATTGCTAGAGCTAGAATTTCAACCTACCTATGTGTACTGATAAGATCTGCTTCCCTACTTAAAGAGAGCATCATCCTGTGATCAGTGTGCTTCGTATTCTCTCTCTCTATATATATATGGTAAAAAGTGGTTATCTCGTGCCTCGCCTTGAGCTATCCATCACTTTTTTTTTTTTATCTATCACTTTCTTATTTT

>Glyma12g34550.7   sequence type=transcript   gene model=Glyma12g34550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTACAATCTCTAAACTCCACTCCCAGTAAAAGTACAATTCATTTACGTCTGGTCTTTTTCAACGGTAAACACTCCAAAGAGTCCAATATCTAGTCACTATAAATGTCATCATCCCCGCAGGAGTTGGGATCACAAATCTTTCGCTAACACTCATTAATTGCAAGAATGGCACTTCGTTGCTTGGTGATGTCCCTTTCTGTTCTCTTCACTCTTGGTCTTGCGAGAGAAAGCCATGCCAGAGACGAAGATTTTTGGCATGCTGTTTGGCCAAACACTCCCATTCCAAGTTCATTGCGAGATCTTCTAAAGCCTGGCCCTGCAAGTTAGTTTTGTGAATTATCAACTCTAGATTCTTGATTATGGGTTTATATCTTCCTAGAATGCTCAAGGTTACCCCATAATTGGAATGGAAAGGTTGAACGAAGAAAGAGAATAAAATAAAAAGAAAAGAAGAAGAATAACTATATATAAATTACCTTTTATTTTAAACACTCCAGCACCTTTTTTTATCTATTTATATCATATGATATCATAAATTCTATTATATTTATATTTTTCTATTTATTTACTCAACTTTTAGTATTTAATAATATAATAAGTATTTATCAAATATTTTCCTTTAACAAAACGAAGAAAGAAAATATATTTTTATATATGAAAAATAAATTTTGTACATCTCTTTTGGTGTTTATATCTATTGAGAGACAAGAAGAAAAATGTTATTATTATTATTATTGCAGGTGTTGAAATCGATGATCACCCTATGCAAATTGAAGAAACACAGTACCCGAAAACCTTCTTCTATAAAGAAGACCTTCATCCAGGCAAAACAATGAAAGTACAATTCAGCAAGCCTCCCTTTCAACAACCATGGGGTGTTGGTACATGGTTAAAGGAAATTAAAGACACTACTAAAGAAGGATATAGTTTTGAAGAGCTATGCATCAAGAAAGAAGCCATTGAGGGAGAAGAGAAGTTTTGTGCAAAATCCTTGGGAACAGTAATTGGTTTTGCCATTTCAAAGCTGGGAAAGAACATTCAAGTACTTTCAAGTTCCTTTGTCAATAAGCAAGACCAATACACTGTGGAAGGAGTGCAGAATCTTGGAGACAAAGCAGTGATGTGTCATAGGCTAAATTTCAGAACTGCAGTATTTTACTGCCATGAAGTCCGTGAAACAACAGCTTTCATGGTTCCATTGGTGGCTGGTGATGGAACCAAAACTCAGGCACTTGCTATTTGCCACTCAAATACTTCTGGAATGAATCATCAAATGCTTCATCAACTTATGGGAGTTGATCCTGGAACTAACCCTGTTTGCCATTTCCTTGGAAGCAAGGCCATTTTATGGGTACCCAATTTATCTGTGGACACTGCCTATCAGACCAACATTGTTGCTTAATTAGTCCATGCATCTTGAGCACCATGAGAATGAGATTGTGTATAAAATAAATTATCATGTGCTGTGTGTTGTGCAAGTACTACCTTCTCTAGCTAGATTGCTAGAGCTAGAATTTCAACCTACCTATGTGTACTGATAAGATCTGCTTCCCTACTTAAAGAGAGCATCATCCTGTGATCAGTGTGCTTCGTATTCTCTCTCTCTATATATATATGGTAAAAAGTGGTTATCTCGTGCCTCGCCTTGAGCTATCCATCACTTTTTTTTTTTTATCTATCACTTTCTTATTTT

Coding sequences of Glyma12g34550

Limit To All Plant Sequences

>Glyma12g34550.1   sequence type=CDS   gene model=Glyma12g34550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCACTTCGTTGCTTGGTGATGTCCCTTTCTGTTCTCTTCACTCTTGGTCTTGCGAGAGAAAGCCATGCCAGAGACGAAGATTTTTGGCATGCTGTTTGGCCAAACACTCCCATTCCAAGTTCATTGCGAGATCTTCTAAAGCCTGGCCCTGCAAGTGTTGAAATCGATGATCACCCTATGCAAATTGAAGAAACACAGTACCCGAAAACCTTCTTCTATAAAGAAGACCTTCATCCAGGCAAAACAATGAAAGTACAATTCAGCAAGCCTCCCTTTCAACAACCATGGGGTGTTGGTACATGGTTAAAGGAAATTAAAGACACTACTAAAGAAGGATATAGTTTTGAAGAGCTATGCATCAAGAAAGAAGCCATTGAGGGAGAAGAGAAGTTTTGTGCAAAATCCTTGGGAACAGTAATTGGTTTTGCCATTTCAAAGCTGGGAAAGAACATTCAAGTACTTTCAAGTTCCTTTGTCAATAAGCAAGACCAATACACTGTGGAAGGAGTGCAGAATCTTGGAGACAAAGCAGTGATGTGTCATAGGCTAAATTTCAGAACTGCAGTATTTTACTGCCATGAAGTCCGTGAAACAACAGCTTTCATGGTTCCATTGGTGGCTGGTGATGGAACCAAAACTCAGGCACTTGCTATTTGCCACTCAAATACTTCTGGAATGAATCATCAAATGCTTCATCAACTTATGGGAGTTGATCCTGGAACTAACCCTGTTTGCCATTTCCTTGGAAGCAAGGCCATTTTATGGGTACCCAATTTATCTGTGGACACTGCCTATCAGACCAACATTGTTGCTTAA

>Glyma12g34550.6   sequence type=CDS   gene model=Glyma12g34550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAAATTGAAGAAACACAGTACCCGAAAACCTTCTTCTATAAAGAAGACCTTCATCCAGGCAAAACAATGAAAGTACAATTCAGCAAGCCTCCCTTTCAACAACCATGGGGTGTTGGTACATGGTTAAAGGAAATTAAAGACACTACTAAAGAAGGATATAGTTTTGAAGAGCTATGCATCAAGAAAGAAGCCATTGAGGGAGAAGAGAAGTTTTGTGCAAAATCCTTGGGAACAGTAATTGGTTTTGCCATTTCAAAGCTGGGAAAGAACATTCAAGTACTTTCAAGTTCCTTTGTCAATAAGCAAGACCAATACACTGTGGAAGGAGTGCAGAATCTTGGAGACAAAGCAGTGATGTGTCATAGGCTAAATTTCAGAACTGCAGTATTTTACTGCCATGAAGTCCGTGAAACAACAGCTTTCATGGTTCCATTGGTGGCTGGTGATGGAACCAAAACTCAGGCACTTGCTATTTGCCACTCAAATACTTCTGGAATGAATCATCAAATGCTTCATCAACTTATGGGAGTTGATCCTGGAACTAACCCTGTTTGCCATTTCCTTGGAAGCAAGGCCATTTTATGGGTACCCAATTTATCTGTGGACACTGCCTATCAGACCAACATTGTTGCTTAA

>Glyma12g34550.7   sequence type=CDS   gene model=Glyma12g34550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAAATTGAAGAAACACAGTACCCGAAAACCTTCTTCTATAAAGAAGACCTTCATCCAGGCAAAACAATGAAAGTACAATTCAGCAAGCCTCCCTTTCAACAACCATGGGGTGTTGGTACATGGTTAAAGGAAATTAAAGACACTACTAAAGAAGGATATAGTTTTGAAGAGCTATGCATCAAGAAAGAAGCCATTGAGGGAGAAGAGAAGTTTTGTGCAAAATCCTTGGGAACAGTAATTGGTTTTGCCATTTCAAAGCTGGGAAAGAACATTCAAGTACTTTCAAGTTCCTTTGTCAATAAGCAAGACCAATACACTGTGGAAGGAGTGCAGAATCTTGGAGACAAAGCAGTGATGTGTCATAGGCTAAATTTCAGAACTGCAGTATTTTACTGCCATGAAGTCCGTGAAACAACAGCTTTCATGGTTCCATTGGTGGCTGGTGATGGAACCAAAACTCAGGCACTTGCTATTTGCCACTCAAATACTTCTGGAATGAATCATCAAATGCTTCATCAACTTATGGGAGTTGATCCTGGAACTAACCCTGTTTGCCATTTCCTTGGAAGCAAGGCCATTTTATGGGTACCCAATTTATCTGTGGACACTGCCTATCAGACCAACATTGTTGCTTAA

Predicted protein sequences of Glyma12g34550

Limit To All Plant Sequences

>Glyma12g34550.1   sequence type=predicted peptide   gene model=Glyma12g34550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MALRCLVMSLSVLFTLGLARESHARDEDFWHAVWPNTPIPSSLRDLLKPGPASVEIDDHPMQIEETQYPKTFFYKEDLHPGKTMKVQFSKPPFQQPWGVGTWLKEIKDTTKEGYSFEELCIKKEAIEGEEKFCAKSLGTVIGFAISKLGKNIQVLSSSFVNKQDQYTVEGVQNLGDKAVMCHRLNFRTAVFYCHEVRETTAFMVPLVAGDGTKTQALAICHSNTSGMNHQMLHQLMGVDPGTNPVCHFLGSKAILWVPNLSVDTAYQTNIVA*

>Glyma12g34550.6   sequence type=predicted peptide   gene model=Glyma12g34550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQIEETQYPKTFFYKEDLHPGKTMKVQFSKPPFQQPWGVGTWLKEIKDTTKEGYSFEELCIKKEAIEGEEKFCAKSLGTVIGFAISKLGKNIQVLSSSFVNKQDQYTVEGVQNLGDKAVMCHRLNFRTAVFYCHEVRETTAFMVPLVAGDGTKTQALAICHSNTSGMNHQMLHQLMGVDPGTNPVCHFLGSKAILWVPNLSVDTAYQTNIVA*

>Glyma12g34550.7   sequence type=predicted peptide   gene model=Glyma12g34550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQIEETQYPKTFFYKEDLHPGKTMKVQFSKPPFQQPWGVGTWLKEIKDTTKEGYSFEELCIKKEAIEGEEKFCAKSLGTVIGFAISKLGKNIQVLSSSFVNKQDQYTVEGVQNLGDKAVMCHRLNFRTAVFYCHEVRETTAFMVPLVAGDGTKTQALAICHSNTSGMNHQMLHQLMGVDPGTNPVCHFLGSKAILWVPNLSVDTAYQTNIVA*

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