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SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G54500 | AT | Annotation by Michelle Graham. TAIR10: flavodoxin-like quinone reductase 1 | chr5:22124674-22126256 FORWARD LENGTH=204 | SoyBase | E_val: 6.00E-134 | ISS |
| GO:0006970 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to osmotic stress | SoyBase | N/A | ISS |
| GO:0009733 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus | SoyBase | N/A | ISS |
| GO:0045892 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0046686 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to cadmium ion | SoyBase | N/A | ISS |
| GO:0055114 | GO-bp | Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process | SoyBase | N/A | ISS |
| GO:0005576 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: extracellular region | SoyBase | N/A | ISS |
| GO:0005773 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: vacuole | SoyBase | N/A | ISS |
| GO:0005774 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0010181 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: FMN binding | SoyBase | N/A | ISS |
| GO:0016491 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity | SoyBase | N/A | ISS |
| GO:0016655 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor | SoyBase | N/A | ISS |
| KOG3135 | KOG | 1,4-benzoquinone reductase-like; Trp repressor binding protein-like/protoplast-secreted protein | JGI | ISS | |
| PF03358 | PFAM | NADPH-dependent FMN reductase | JGI | ISS | |
| UniRef100_C6SXL2 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6SXL2_SOYBN | SoyBase | E_val: 9.00E-144 | ISS |
| UniRef100_G7ITL8 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Flavoprotein wrbA n=1 Tax=Medicago truncatula RepID=G7ITL8_MEDTR | SoyBase | E_val: 7.00E-137 | ISS |
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Glyma12g34500 not represented in the dataset |
Glyma12g34500 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma13g35994 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.12g216900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma12g34500.2 sequence type=transcript gene model=Glyma12g34500 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GTCACTTCTTCAATGGGTTCTTAAATTTCGAGCCTTTTGAAAGCCCATTGAAGATCTAGGGGTGTGGCAGCTTTCTTCGATCTGATGCATTGTTGTTTATGTGATGGAGAACTGGTACTACTCCATGTATGGGCATGTTGAGAAACTAGCAGAAGAAATAAAGAAAGGGGCTTCCTCTGTGGAAGGTGTTGAGGCCAAATTATGGCAGGTACCTGAGACGCTGCAGGATGAGGTGCTCGGTAAGATGAGTGCACCACCCAAGAGCGATGTACCAGTCATTACCCCGAATGAACTATCCGAGGCTGATGGCTTTGTATTCGGCTTCCCAACAAGGTTTGGAATGATGGCTGCTCAGTTTAAAGCTTTTCTAGATGCTACTGGAGGCTTATGGAGAGCACAACAGCTTGCAGGCAAGCCTGCTGGCATCTTCTACAGCACTGGTTCACAAGGCGGCGGACAAGAGACTACAGCGCTCACTGCTATCACTCAACTGGTTCATCATGGGATGATATTCATTCCAATCGGTTACACGTTTGGTGCTGGCATGTTCGAGATGGAGAAAGTGAAAGGTGGAAGTCCATATGGTGCCGGAACTTATGCCGGTGACGGCTCAAGACAGCCAAGTGAGCTCGAGTTACAGCAAGCATTCCACCAAGGCAAGTACATTGCCGGCATCACAAAGAAGCTCAAGCAAGCTGCATAATGTTTGCCTTCATATATATAGATTATACTATTATTATTAAACCATACCACAATATTGCTTGAAAATCATTACCGATTTTTTAGTCTTGAAATATATTGAGTTTTGTTTTTCTGAGCTTGCAAGTATTTTTTTTTTTCTTTTCTAATCTTCGTGAAGGAAATGCTTTGTAAGAGTGTTACATGTTGCAGTGGATGTTGCAATTTGTTGAATGAGGAAAGTTTGTGTGTGTTGTCCTTTCGTGTTAAGCTGAAACAATACTTGTTCCTATCTTTTGTATTACCCCGTTACGCACATAAACATTGCAACGTTTGCAACGAACAATTTGAGTTGAGAATTGGCTTTATTATTCTCTCGTATACAATAAAGATTGCGTGTTTGAAGAAATTAA
>Glyma12g34500.1 sequence type=CDS gene model=Glyma12g34500 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTGTCAAAGTTTATATTGTGTACTACTCCATGTATGGGCATGTTGAGAAACTAGCAGAAGAAATAAAGAAAGGGGCTTCCTCTGTGGAAGGTGTTGAGGCCAAATTATGGCAGGTACCTGAGACGCTGCAGGATGAGGTGCTCGGTAAGATGAGTGCACCACCCAAGAGCGATGTACCAGTCATTACCCCGAATGAACTATCCGAGGCTGATGGCTTTGTATTCGGCTTCCCAACAAGGTTTGGAATGATGGCTGCTCAGTTTAAAGCTTTTCTAGATGCTACTGGAGGCTTATGGAGAGCACAACAGCTTGCAGGCAAGCCTGCTGGCATCTTCTACAGCACTGGTTCACAAGGCGGCGGACAAGAGACTACAGCGCTCACTGCTATCACTCAACTGGTTCATCATGGGATGATATTCATTCCAATCGGTTACACGTTTGGTGCTGGCATGTTCGAGATGGAGAAAGTGAAAGGTGGAAGTCCATATGGTGCCGGAACTTATGCCGGTGACGGCTCAAGACAGCCAAGTGAGCTCGAGTTACAGCAAGCATTCCACCAAGGCAAGTACATTGCCGGCATCACAAAGAAGCTCAAGCAAGCTGCATAA >Glyma12g34500.2 sequence type=CDS gene model=Glyma12g34500 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGAACTGGTACTACTCCATGTATGGGCATGTTGAGAAACTAGCAGAAGAAATAAAGAAAGGGGCTTCCTCTGTGGAAGGTGTTGAGGCCAAATTATGGCAGGTACCTGAGACGCTGCAGGATGAGGTGCTCGGTAAGATGAGTGCACCACCCAAGAGCGATGTACCAGTCATTACCCCGAATGAACTATCCGAGGCTGATGGCTTTGTATTCGGCTTCCCAACAAGGTTTGGAATGATGGCTGCTCAGTTTAAAGCTTTTCTAGATGCTACTGGAGGCTTATGGAGAGCACAACAGCTTGCAGGCAAGCCTGCTGGCATCTTCTACAGCACTGGTTCACAAGGCGGCGGACAAGAGACTACAGCGCTCACTGCTATCACTCAACTGGTTCATCATGGGATGATATTCATTCCAATCGGTTACACGTTTGGTGCTGGCATGTTCGAGATGGAGAAAGTGAAAGGTGGAAGTCCATATGGTGCCGGAACTTATGCCGGTGACGGCTCAAGACAGCCAAGTGAGCTCGAGTTACAGCAAGCATTCCACCAAGGCAAGTACATTGCCGGCATCACAAAGAAGCTCAAGCAAGCTGCATAA
>Glyma12g34500.1 sequence type=predicted peptide gene model=Glyma12g34500 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAVKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLQDEVLGKMSAPPKSDVPVITPNELSEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRAQQLAGKPAGIFYSTGSQGGGQETTALTAITQLVHHGMIFIPIGYTFGAGMFEMEKVKGGSPYGAGTYAGDGSRQPSELELQQAFHQGKYIAGITKKLKQAA* >Glyma12g34500.2 sequence type=predicted peptide gene model=Glyma12g34500 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MENWYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLQDEVLGKMSAPPKSDVPVITPNELSEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRAQQLAGKPAGIFYSTGSQGGGQETTALTAITQLVHHGMIFIPIGYTFGAGMFEMEKVKGGSPYGAGTYAGDGSRQPSELELQQAFHQGKYIAGITKKLKQAA*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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