Glyma12g34410 - SoyBase

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Report for Sequence Feature Glyma12g34410

Feature Type:	gene_model
Chromosome:	Gm12
Start:	37542203
stop:	37547417
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma12g34410

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G54590	AT	Annotation by Michelle Graham. TAIR10: Protein kinase superfamily protein \| chr5:22180480-22182698 FORWARD LENGTH=440	SoyBase	E_val: 0	ISS
GO:0006468	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein phosphorylation	SoyBase	N/A	ISS
GO:0009409	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cold	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0004672	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein kinase activity	SoyBase	N/A	ISS
GO:0004674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity	SoyBase	N/A	ISS
GO:0004713	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein tyrosine kinase activity	SoyBase	N/A	ISS
GO:0005516	GO-mf	Annotation by Michelle Graham. GO Molecular Function: calmodulin binding	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016772	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups	SoyBase	N/A	ISS
KOG1187	KOG	Serine/threonine protein kinase	JGI		ISS
PTHR24420	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24420:SF419	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF07714	PFAM	Protein tyrosine kinase	JGI		ISS
UniRef100_C6ZRY5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Protein kinase family protein n=1 Tax=Glycine max RepID=C6ZRY5_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_C6ZRY5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Protein kinase family protein n=1 Tax=Glycine max RepID=C6ZRY5_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma12g34410

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma12g34410

Paralog	Evidence	Comments
Glyma13g36140	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma12g34410 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.12g216000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma12g34410

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma12g34410

Limit To All Plant Sequences

>Glyma12g34410.2   sequence type=transcript   gene model=Glyma12g34410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCGTGTTCTGTCGTTTGTATCTGAACTTTTTATCAGTTTTTCCGAAACTGTGTCTGCTTTCAACTCTCTAGTTGCACATAACATAACAGTAACACATTCTTTTCTCTCGTTTTTGTTATTGGAATCTCGTTCACTTCAGGTTTCTTTACCCTTTTGATTCCTTCCCACTTCTGAGTTTCACTTTGGTGTCTTTAGCAACGTTTCCACGAAACACGTAGCCAACTGCCTTCAGTTAATTCAGCTTTTTTTCTTCTAGTGTGTGAATTGGTATGTAAATGGATTGGATGATCAATAGGGAATTATAGCACAGAAGAGGAACTAGGAGAGATGAAAGAGGAGTCAACTGGACTTATCATTGGGATTTCCATAGGTGTTGTGATTGGAGTTGGTTTGGCAATTTCGGCATTGTTCTGTCTTAGATATCACCGGAAGCGGTCGCAGATTGGCAATAGCAGTTCCCGGAGGGCACATACCATACCTATCCGTGAAAATGGTGTTGATTCTTGCAATATTCTATCAGACTCAACCTTAGGTCCAGAATCACCTGTGAGGTCTGGACGAAATGGCATGTCCTTATGGCTTGATGGCTTCAAGAAGAGTAGTAACATGGTGTCAGCATCTGGAATACCAGAATATTCATACAAGGATTTGCAAAAGGCAACATATAATTTTACAACACTCATAGGACAAGGCGCATTTGGTCCTGTATATAAAGCTCAGATGTCTACTGGCGAGACTGTTGCAGTTAAAGTTCTTGCAACTAATTCTAAGCAAGGGGAGAAAGAATTTCAGACAGAGGTTATGTTGTTGGGAAGGTTACATCATAGAAATCTGGTCAATTTGGTCGGGTATTGTGCAGAAAAGGGGCAACATATGCTTGTATATGTCTACATGAGTAAAGGAAGCTTGGCTTCCCACTTGTATAGTGAAGAGAATGGAGCTCTGGGCTGGGATTTGAGGGTTCATATAGCTTTAGACGTAGCAAGAGGCATAGAGTATCTTCATGACGGGGCAGTTCCTCCTGTAATCCATCGAGATATCAAATCTTCTAACATTCTCTTGGACCAGTCCATGCGAGCCAGGGTCGCCGATTTTGGACTCTCAAGAGAAGAGATGGTGGATAAACATGCTGCAATTCGGGGTACCTTTGGCTATCTTGACCCTGAGTATATATCTTCAGGGACATTCACCAAGAAAAGTGATGTATACAGTTTTGGGGTCTTGCTCTTTGAGCTCATAGCTGGCCGAAATCCTCAGCAAGGTCTTATGGAGTATGTTGAGCTTGCAGCAATGAACACCGAGGGAAAAGTTGGTTGGGAGGAGATAGTTGATTCTCGGCTCGAGGGAAAATGTGATTTTCAAGAGCTGAATCAAGTGGCAGCACTTGCCTACAAATGCATCAACCGTGCCCCGAAGAAACGCCCTTCAATGAGGGACATAGTGCAAGTGTTTACACGGATCCTCAAATCAAGGTACCAAAGGAATCATCATCACAAAAAGTCTCTCTCAGCCACAGTTGATGAAGTTTCCATTGATGTTGATCAGCTAGAAACCAAGAGTTCTGTCACTGATCACAGAAGAGAAGAATCTATAGATAGTACAGCTGACATTTATGATTTGTAGAATAAGGTTTTGCATTTAGCTAAGTTCTTTTGGTTACATTGAATTTTTGGTTTTTGCCTTTGGATTTGATGATGATGCCCGCCATCATCTTCTGTAGTTGTGTTAACATGTTCTTTTGTTGTTTTATTTTTTTTTCTCATTTGTTTTTTGTTTATTTATCTTACCTAGTTCTGTCGTCTCGCAGAAATGACACAACAAAATTTGTATATTAATACTTTCAAGAATTAATTTGAAGTGTCAAAAGAGAAAGTCATCTATTTTCATACTCTATAA

Coding sequences of Glyma12g34410

Limit To All Plant Sequences

>Glyma12g34410.1   sequence type=CDS   gene model=Glyma12g34410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAAGAGGAGTCAACTGGACTTATCATTGGGATTTCCATAGGTGTTGTGATTGGAGTTGGTTTGGCAATTTCGGCATTGTTCTGTCTTAGATATCACCGGAAGCGGTCGCAGATTGGCAATAGCAGTTCCCGGAGGGCACATACCATACCTATCCGTGAAAATGGTGTTGATTCTTGCAATATTCTATCAGACTCAACCTTAGGTCCAGAATCACCTGTGAGGTCTGGACGAAATGGCATGTCCTTATGGCTTGATGGCTTCAAGAAGAGTAGTAACATGGTGTCAGCATCTGGAATACCAGAATATTCATACAAGGATTTGCAAAAGGCAACATATAATTTTACAACACTCATAGGACAAGGCGCATTTGGTCCTGTATATAAAGCTCAGATGTCTACTGGCGAGACTGTTGCAGTTAAAGTTCTTGCAACTAATTCTAAGCAAGGGGAGAAAGAATTTCAGACAGAGGTTATGTTGTTGGGAAGGTTACATCATAGAAATCTGGTCAATTTGGTCGGGTATTGTGCAGAAAAGGGGCAACATATGCTTGTATATGTCTACATGAGTAAAGGAAGCTTGGCTTCCCACTTGTATAGTGAAGAGAATGGAGCTCTGGGCTGGGATTTGAGGGTTCATATAGCTTTAGACGTAGCAAGAGGCATAGAGTATCTTCATGACGGGGCAGTTCCTCCTGTAATCCATCGAGATATCAAATCTTCTAACATTCTCTTGGACCAGTCCATGCGAGCCAGGGTCGCCGATTTTGGACTCTCAAGAGAAGAGATGGTGGATAAACATGCTGCAATTCGGGGTACCTTTGGCTATCTTGACCCTGAGTATATATCTTCAGGGACATTCACCAAGAAAAGTGATGTATACAGTTTTGGGGTCTTGCTCTTTGAGCTCATAGCTGGCCGAAATCCTCAGCAAGGTCTTATGGAGTATGTTGAGCTTGCAGCAATGAACACCGAGGGAAAAGTTGGTTGGGAGGAGATAGTTGATTCTCGGCTCGAGGGAAAATGTGATTTTCAAGAGCTGAATCAAGTGGCAGCACTTGCCTACAAATGCATCAACCGTGCCCCGAAGAAACGCCCTTCAATGAGGGACATAGTGCAAGTGTTTACACGGATCCTCAAATCAAGGTACCAAAGGAATCATCATCACAAAAAGTCTCTCTCAGCCACAGTTGATGAAGTTTCCATTGATGTTGATCAGCTAGAAACCAAGAGTTCTGTCACTGATCACAGAAGAGAAGAATCTATAGATAGTACAGCTGACATTTATGATTTGTAG

>Glyma12g34410.2   sequence type=CDS   gene model=Glyma12g34410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAAGAGGAGTCAACTGGACTTATCATTGGGATTTCCATAGGTGTTGTGATTGGAGTTGGTTTGGCAATTTCGGCATTGTTCTGTCTTAGATATCACCGGAAGCGGTCGCAGATTGGCAATAGCAGTTCCCGGAGGGCACATACCATACCTATCCGTGAAAATGGTGTTGATTCTTGCAATATTCTATCAGACTCAACCTTAGGTCCAGAATCACCTGTGAGGTCTGGACGAAATGGCATGTCCTTATGGCTTGATGGCTTCAAGAAGAGTAGTAACATGGTGTCAGCATCTGGAATACCAGAATATTCATACAAGGATTTGCAAAAGGCAACATATAATTTTACAACACTCATAGGACAAGGCGCATTTGGTCCTGTATATAAAGCTCAGATGTCTACTGGCGAGACTGTTGCAGTTAAAGTTCTTGCAACTAATTCTAAGCAAGGGGAGAAAGAATTTCAGACAGAGGTTATGTTGTTGGGAAGGTTACATCATAGAAATCTGGTCAATTTGGTCGGGTATTGTGCAGAAAAGGGGCAACATATGCTTGTATATGTCTACATGAGTAAAGGAAGCTTGGCTTCCCACTTGTATAGTGAAGAGAATGGAGCTCTGGGCTGGGATTTGAGGGTTCATATAGCTTTAGACGTAGCAAGAGGCATAGAGTATCTTCATGACGGGGCAGTTCCTCCTGTAATCCATCGAGATATCAAATCTTCTAACATTCTCTTGGACCAGTCCATGCGAGCCAGGGTCGCCGATTTTGGACTCTCAAGAGAAGAGATGGTGGATAAACATGCTGCAATTCGGGGTACCTTTGGCTATCTTGACCCTGAGTATATATCTTCAGGGACATTCACCAAGAAAAGTGATGTATACAGTTTTGGGGTCTTGCTCTTTGAGCTCATAGCTGGCCGAAATCCTCAGCAAGGTCTTATGGAGTATGTTGAGCTTGCAGCAATGAACACCGAGGGAAAAGTTGGTTGGGAGGAGATAGTTGATTCTCGGCTCGAGGGAAAATGTGATTTTCAAGAGCTGAATCAAGTGGCAGCACTTGCCTACAAATGCATCAACCGTGCCCCGAAGAAACGCCCTTCAATGAGGGACATAGTGCAAGTGTTTACACGGATCCTCAAATCAAGGTACCAAAGGAATCATCATCACAAAAAGTCTCTCTCAGCCACAGTTGATGAAGTTTCCATTGATGTTGATCAGCTAGAAACCAAGAGTTCTGTCACTGATCACAGAAGAGAAGAATCTATAGATAGTACAGCTGACATTTATGATTTGTAG

Predicted protein sequences of Glyma12g34410

Limit To All Plant Sequences

>Glyma12g34410.1   sequence type=predicted peptide   gene model=Glyma12g34410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKEESTGLIIGISIGVVIGVGLAISALFCLRYHRKRSQIGNSSSRRAHTIPIRENGVDSCNILSDSTLGPESPVRSGRNGMSLWLDGFKKSSNMVSASGIPEYSYKDLQKATYNFTTLIGQGAFGPVYKAQMSTGETVAVKVLATNSKQGEKEFQTEVMLLGRLHHRNLVNLVGYCAEKGQHMLVYVYMSKGSLASHLYSEENGALGWDLRVHIALDVARGIEYLHDGAVPPVIHRDIKSSNILLDQSMRARVADFGLSREEMVDKHAAIRGTFGYLDPEYISSGTFTKKSDVYSFGVLLFELIAGRNPQQGLMEYVELAAMNTEGKVGWEEIVDSRLEGKCDFQELNQVAALAYKCINRAPKKRPSMRDIVQVFTRILKSRYQRNHHHKKSLSATVDEVSIDVDQLETKSSVTDHRREESIDSTADIYDL*

>Glyma12g34410.2   sequence type=predicted peptide   gene model=Glyma12g34410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKEESTGLIIGISIGVVIGVGLAISALFCLRYHRKRSQIGNSSSRRAHTIPIRENGVDSCNILSDSTLGPESPVRSGRNGMSLWLDGFKKSSNMVSASGIPEYSYKDLQKATYNFTTLIGQGAFGPVYKAQMSTGETVAVKVLATNSKQGEKEFQTEVMLLGRLHHRNLVNLVGYCAEKGQHMLVYVYMSKGSLASHLYSEENGALGWDLRVHIALDVARGIEYLHDGAVPPVIHRDIKSSNILLDQSMRARVADFGLSREEMVDKHAAIRGTFGYLDPEYISSGTFTKKSDVYSFGVLLFELIAGRNPQQGLMEYVELAAMNTEGKVGWEEIVDSRLEGKCDFQELNQVAALAYKCINRAPKKRPSMRDIVQVFTRILKSRYQRNHHHKKSLSATVDEVSIDVDQLETKSSVTDHRREESIDSTADIYDL*

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