SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G21750 | AT | Annotation by Michelle Graham. TAIR10: Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein | chr4:11556965-11560243 FORWARD LENGTH=762 | SoyBase | E_val: 2.00E-59 | ISS |
| GO:0006355 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0006473 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein acetylation | SoyBase | N/A | ISS |
| GO:0009793 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy | SoyBase | N/A | ISS |
| GO:0009913 | GO-bp | Annotation by Michelle Graham. GO Biological Process: epidermal cell differentiation | SoyBase | N/A | ISS |
| GO:0010027 | GO-bp | Annotation by Michelle Graham. GO Biological Process: thylakoid membrane organization | SoyBase | N/A | ISS |
| GO:0010075 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of meristem growth | SoyBase | N/A | ISS |
| GO:0010228 | GO-bp | Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem | SoyBase | N/A | ISS |
| GO:0016226 | GO-bp | Annotation by Michelle Graham. GO Biological Process: iron-sulfur cluster assembly | SoyBase | N/A | ISS |
| GO:0048481 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ovule development | SoyBase | N/A | ISS |
| GO:0048825 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cotyledon development | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003677 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA binding | SoyBase | N/A | ISS |
| GO:0003700 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity | SoyBase | N/A | ISS |
| GO:0043565 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding | SoyBase | N/A | ISS |
| PTHR24325 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR24325:SF193 | Panther | JGI | ISS | ||
| PF01852 | PFAM | START domain | JGI | ISS | |
| UniRef100_G7IJP4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Homeodomain protein (HB2) n=1 Tax=Medicago truncatula RepID=G7IJP4_MEDTR | SoyBase | E_val: 4.00E-107 | ISS |
| UniRef100_UPI000233CB8C | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233CB8C related cluster n=1 Tax=unknown RepID=UPI000233CB8C | SoyBase | E_val: 0 | ISS |
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Glyma12g34061 not represented in the dataset |
Glyma12g34061 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma13g36471 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.12g212800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma12g34061.1 sequence type=CDS gene model=Glyma12g34061 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCAACGAGCGAGTGACCTTATTTTTGGGTTCTCAATATTTGCTGAGCCAATGAAAACCGAAATCATCGAGCATGCGCGTTTAGCTATGGATGAGTTGGTAAAGTTAGGCACTGCAGGGCATCCTTTATGGCAGCCGCAACCAAAGGATAGATTTGACATTTTAAATCAAATTGAATATTTGAGGCAATTTGGTGAGGTTGATACAGCGCTAAGGGAGATTGTTAAGTTGATTGAGGTTGGAGAGCCTCAAAATTTACCAAGCTTTGACACATATCAAACCGAGCAGCCAGCATCAAAGGAAACTCCGACAGTAGCTCTACAAACTGAAGCTTCACGAGATATGGCGTTTATTAACATGTCGCCAATCAGCATTGTTGAATTGCTGATGGATGTAAATGAATGGTCGAGTGCCTTTTACAACATTGTCTCAAAAGCAACACTTGTAGGAACTTTGTTAGGAGGGGAGAGAGGCTATGATGACAAATTGCACGTGATGAGCGCTGAAATTCATTTACCTACTACTACTGTACCGACTAGGGAGTGTTATTTTGGAAGGTTCAGCAAGCAGTTGTCTCATAACGTATGGGGAGTCGTCGATATATCATTGGAGAAGTTTATTCCTTCCCCAACGAGTAATTTCTTAAAAAGACCATCGGGATGTTTAATTAGTGGAATGCCTAATGGACATTCCAAGGTTGCATGGGTTGAGCATGTAGAAGCAGACCATAGTCATTTGGACAATTATTTCAAGCCTCTAGTCACCTCCACTCTAGCTTTTGGTGCAAGCCGTTGGCTTAATTCCTTAAATCGATATGGTGAATGGTTACAAACTCTAAAAGCAACAACATTTGTTGCAGATGAAGGAGGTACATATGTCTTCTGCACTCTCTACTTTAATCTTTTTAAGGTATTTCATTATATGACTTTGCATCTTTGTTTTTTTTTAATCTCTTCTTTTGTGTTTTCTTTTGTATATGTAAAATCAATATAA
>Glyma12g34061.1 sequence type=predicted peptide gene model=Glyma12g34061 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MQRASDLIFGFSIFAEPMKTEIIEHARLAMDELVKLGTAGHPLWQPQPKDRFDILNQIEYLRQFGEVDTALREIVKLIEVGEPQNLPSFDTYQTEQPASKETPTVALQTEASRDMAFINMSPISIVELLMDVNEWSSAFYNIVSKATLVGTLLGGERGYDDKLHVMSAEIHLPTTTVPTRECYFGRFSKQLSHNVWGVVDISLEKFIPSPTSNFLKRPSGCLISGMPNGHSKVAWVEHVEADHSHLDNYFKPLVTSTLAFGASRWLNSLNRYGEWLQTLKATTFVADEGGTYVFCTLYFNLFKVFHYMTLHLCFFLISSFVFSFVYVKSI*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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