Glyma12g33990 - SoyBase

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Report for Sequence Feature Glyma12g33990

Feature Type:	gene_model
Chromosome:	Gm12
Start:	37175797
stop:	37178917
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma12g33990

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G58710	AT	Annotation by Michelle Graham. TAIR10: WRKY DNA-binding protein 69 \| chr3:21715192-21716766 FORWARD LENGTH=271	SoyBase	E_val: 3.00E-70	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0016132	GO-bp	Annotation by Michelle Graham. GO Biological Process: brassinosteroid biosynthetic process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0043565	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding	SoyBase	N/A	ISS
PF03106	PFAM	WRKY DNA -binding domain	JGI		ISS
UniRef100_B0LUS0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Transcription factor n=1 Tax=Glycine max RepID=B0LUS0_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_I1LUP5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LUP5_SOYBN	SoyBase	E_val: 0	ISS

Proteins Associated with Glyma12g33990

Locus	Gene Symbol	Protein Name
	WRKY16	WRKY Transcription Factor

Expression Patterns of Glyma12g33990

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma12g33990

Paralog	Evidence	Comments
Glyma13g36540	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma12g33990 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.12g212300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma12g33990

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma12g33990

Limit To All Plant Sequences

>Glyma12g33990.1   sequence type=CDS   gene model=Glyma12g33990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCATCACCGCAGATTCAGCAAATTAATACATGTGGCTGACCCAGATGAGCCCGAGTCAGGGCCCGAGCCCGCCTCAGAAGCTGGGCCTGCTTCTCCTTCTTCCGGTGAAGACACTAAAACTGAAGCACCGTCACCCAAGAAAAGGAGGGAGATGAAGAAGAGGGTGGTGACGATACCGATCGGTGACGTGGATGGATCTAAGAGCAAAGGAGAGAATTATCCACCGTCTGATTCATGGGCCTGGAGGAAGTACGGCCAAAAGCCCATCAAAGGCTCCCCTTACCCAAGGGGATACTACCGATGCAGCAGTTCAAAGGGGTGTCCCGCAAGGAAGCAAGTTGAGCGAAGCCGTGTGGACCCCACAAAGCTCATAGTCACCTACGCTTATGAACACAACCACTCCCTTCCTTTTCCAAAATCAAATTCTTCCGCCGCTTCCGCCGCCGTAAGCGACGGCGCAGCCGTCTTGCCGATAGAGTCCGCCGCCAGGTTTCCGCCGGAGGAGGAGATGACGGTGTTCGCGACAGACTCCGACCTCGAACTCGCCGGCGACGCGGCGGTTCTTCTCAGCCACCACCACCACCACTTCGGCTGGTTCGATGACGTAGCGTCCACCGGCGTCCTAGAGAGCCCGATCTGCGGCGAGGTAGATGACGTGGCGGTGCCGATGAGAGAAGAGGACGAGTCGCTCTTCGCCGATCTCGGCGAGTTGCCGGAGTGCTCGGCAGTTTTCCGGCGGAGGAATATTCCGGCGACCAGCGCGATCCGGTGCGGCGGCATCACAGGATAA

Predicted protein sequences of Glyma12g33990

Limit To All Plant Sequences

>Glyma12g33990.1   sequence type=predicted peptide   gene model=Glyma12g33990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MHHRRFSKLIHVADPDEPESGPEPASEAGPASPSSGEDTKTEAPSPKKRREMKKRVVTIPIGDVDGSKSKGENYPPSDSWAWRKYGQKPIKGSPYPRGYYRCSSSKGCPARKQVERSRVDPTKLIVTYAYEHNHSLPFPKSNSSAASAAVSDGAAVLPIESAARFPPEEEMTVFATDSDLELAGDAAVLLSHHHHHFGWFDDVASTGVLESPICGEVDDVAVPMREEDESLFADLGELPECSAVFRRRNIPATSAIRCGGITG*

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