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Report for Sequence Feature Glyma12g33800

Feature Type:gene_model
Chromosome:Gm12
Start:36987099
stop:36990573
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma12g33800
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G42590AT Annotation by Michelle Graham. TAIR10: general regulatory factor 9 | chr2:17732118-17733775 REVERSE LENGTH=262 SoyBaseE_val: 1.00E-161ISS
GO:0006096GO-bp Annotation by Michelle Graham. GO Biological Process: glycolysis SoyBaseN/AISS
GO:0006833GO-bp Annotation by Michelle Graham. GO Biological Process: water transport SoyBaseN/AISS
GO:0006972GO-bp Annotation by Michelle Graham. GO Biological Process: hyperosmotic response SoyBaseN/AISS
GO:0007030GO-bp Annotation by Michelle Graham. GO Biological Process: Golgi organization SoyBaseN/AISS
GO:0009266GO-bp Annotation by Michelle Graham. GO Biological Process: response to temperature stimulus SoyBaseN/AISS
GO:0009651GO-bp Annotation by Michelle Graham. GO Biological Process: response to salt stress SoyBaseN/AISS
GO:0009750GO-bp Annotation by Michelle Graham. GO Biological Process: response to fructose stimulus SoyBaseN/AISS
GO:0019288GO-bp Annotation by Michelle Graham. GO Biological Process: isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway SoyBaseN/AISS
GO:0019344GO-bp Annotation by Michelle Graham. GO Biological Process: cysteine biosynthetic process SoyBaseN/AISS
GO:0032880GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of protein localization SoyBaseN/AISS
GO:0042744GO-bp Annotation by Michelle Graham. GO Biological Process: hydrogen peroxide catabolic process SoyBaseN/AISS
GO:0046686GO-bp Annotation by Michelle Graham. GO Biological Process: response to cadmium ion SoyBaseN/AISS
GO:0048528GO-bp Annotation by Michelle Graham. GO Biological Process: post-embryonic root development SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0009570GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma SoyBaseN/AISS
GO:0005509GO-mf Annotation by Michelle Graham. GO Molecular Function: calcium ion binding SoyBaseN/AISS
GO:0019904GO-mf Annotation by Michelle Graham. GO Molecular Function: protein domain specific binding SoyBaseN/AISS
GO:0045309GO-mf Annotation by Michelle Graham. GO Molecular Function: protein phosphorylated amino acid binding SoyBaseN/AISS
KOG0841 KOG Multifunctional chaperone (14-3-3 family) JGI ISS
PTHR18860Panther 14-3-3 JGI ISS
PF00244PFAM 14-3-3 protein JGI ISS
UniRef100_C6TM63UniRef Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein n=1 Tax=Glycine max RepID=C6TM63_SOYBN SoyBaseE_val: 0ISS
UniRef100_Q96453UniRef Annotation by Michelle Graham. Most informative UniRef hit: 14-3-3-like protein D n=1 Tax=Glycine max RepID=1433D_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma12g33800
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma12g33800
ParalogEvidenceComments
Glyma13g36690 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma12g33800 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.12g210400 Wm82.a2.v1IGC As supplied by JGI

References for Glyma12g33800
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma12g33800
>Glyma12g33800.2   sequence type=transcript   gene model=Glyma12g33800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCCCTGGAGTCAAGTTCGAGCATCGAAAGGACCAAAAAGGAAAAACAGAGAAAAAGGAAGGGACACATTTGACATTTCACGACCGCGTTCTTTTCTACGGAGCCTCGACCAAGAAGAATCGCAGAGAGAAGAGGGTCAGAGTGAGAAAGAGAGAGAGAGAGAGAGAAACTGAGAGAAATTCGCAAACCCTAATTTCGGAAAGATCGGCGATGGCTGCCTCCAAGGATCGCGAGAACTTCGTCTACATCGCCAAGCTCGCCGAACAGGCCGAGCGATACGAAGAGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACTGTGGAGGAGCGGAATTTACTTTCTGTTGGGTACAAGAATGTGATTGGTGCTCGGAGAGCATCGTGGAGGATCCTGTCTTCCATTGAGCAAAAGGAAGAAACAAAAGGGAACGAGTTGAATGCGAAGCGGATTAAGGAGTACAGGCAGAAGGTTGAATTGGAGCTTTCAAACATCTGTAATGATGTTATGACAGTGATTGATGAGCACCTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGATGAAAGGAGATTATTATCGTTATCTTGCCGAATTTAAGGCAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAGTCTGCTACCACTGCAGCAGAGGCTGATTTACCTCCAACACATCCCATCCGATTGGGTCTAGCTTTAAATTTCTCAGTTTTCTATTACGAGATCTTGAACTCTCCAGAAAGAGCCTGTCATCTTGCAAAACAAGCTTTTGATGAAGCTATTTCTGAGCTTGACACCTTGAATGAGGAGTCATACAAAGACAGCACCTTAATCATGCAACTTCTCAGGGACAACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGAGGCAGAGTGAGTCCGATTGTTGATGGGATCTTCCTTAGGATTCGATGCATGCGTTTGGGAATGAAACATGAGGGCCGTTACTTATCCGTGTATTAGCTAGAGATAGGGTTCCATTGTTTTCTCTTTGTTTCTTGTTGATTGCCCCATACTTCCCGATAGGGGAAAGAGATACTCCATTTGTGCTATATTTATGGTATGTTTTTATTTGTGTGGTGTCTGGAAATGGCCTATTTCATTCCCAATCCTTTTCCTCCAGTCTCTGGGGGATTTGATTGATGAGAATTGCTTATGGTGTATTTCCTTTTCCAATGAAATGCTACAACCTTTACTGCAATGTTGGAGATTTATTCTTCGATTGTTTGATCTTGACTTCCATTCTTACCAATTCTATTGCCGCAAAAACGTGGAACAAGTTAATAAACGGCTGAGAAAGTTGTGTGGCTTC
Coding sequences of Glyma12g33800
>Glyma12g33800.1   sequence type=CDS   gene model=Glyma12g33800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGCCTCCAAGGATCGCGAGAACTTCGTCTACATCGCCAAGCTCGCCGAACAGGCCGAGCGATACGAAGAGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACTGTGGAGGAGCGGAATTTACTTTCTGTTGGGTACAAGAATGTGATTGGTGCTCGGAGAGCATCGTGGAGGATCCTGTCTTCCATTGAGCAAAAGGAAGAAACAAAAGGGAACGAGTTGAATGCGAAGCGGATTAAGGAGTACAGGCAGAAGGTTGAATTGGAGCTTTCAAACATCTGTAATGATGTTATGACAGTGATTGATGAGCACCTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGATGAAAGGAGATTATTATCGTTATCTTGCCGAATTTAAGGCAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAGTCTGCTACCACTGCAGCAGAGGCTGATTTACCTCCAACACATCCCATCCGATTGGGTCTAGCTTTAAATTTCTCAGTTTTCTATTACGAGATCTTGAACTCTCCAGAAAGAGCCTGTCATCTTGCAAAACAAGCTTTTGATGAAGCTATTTCTGAGCTTGACACCTTGAATGAGGAGTCATACAAAGACAGCACCTTAATCATGCAACTTCTCAGGGACAACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAGAAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGAGGCAGAGTGA

>Glyma12g33800.2   sequence type=CDS   gene model=Glyma12g33800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGCCTCCAAGGATCGCGAGAACTTCGTCTACATCGCCAAGCTCGCCGAACAGGCCGAGCGATACGAAGAGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACTGTGGAGGAGCGGAATTTACTTTCTGTTGGGTACAAGAATGTGATTGGTGCTCGGAGAGCATCGTGGAGGATCCTGTCTTCCATTGAGCAAAAGGAAGAAACAAAAGGGAACGAGTTGAATGCGAAGCGGATTAAGGAGTACAGGCAGAAGGTTGAATTGGAGCTTTCAAACATCTGTAATGATGTTATGACAGTGATTGATGAGCACCTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGATGAAAGGAGATTATTATCGTTATCTTGCCGAATTTAAGGCAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAGTCTGCTACCACTGCAGCAGAGGCTGATTTACCTCCAACACATCCCATCCGATTGGGTCTAGCTTTAAATTTCTCAGTTTTCTATTACGAGATCTTGAACTCTCCAGAAAGAGCCTGTCATCTTGCAAAACAAGCTTTTGATGAAGCTATTTCTGAGCTTGACACCTTGAATGAGGAGTCATACAAAGACAGCACCTTAATCATGCAACTTCTCAGGGACAACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGAGGCAGAGTGA
Predicted protein sequences of Glyma12g33800
>Glyma12g33800.1   sequence type=predicted peptide   gene model=Glyma12g33800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAASKDRENFVYIAKLAEQAERYEEMVESMKNVANLDVELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEETKGNELNAKRIKEYRQKVELELSNICNDVMTVIDEHLIPSAAAGESTVFYYKMKGDYYRYLAEFKAGNEKKEAADQSMKAYESATTAAEADLPPTHPIRLGLALNFSVFYYEILNSPERACHLAKQAFDEAISELDTLNEESYKDSTLIMQLLRDNLTLWTSDIPEDGEDAQKVNGTAKLGGGEEAE*

>Glyma12g33800.2   sequence type=predicted peptide   gene model=Glyma12g33800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAASKDRENFVYIAKLAEQAERYEEMVESMKNVANLDVELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEETKGNELNAKRIKEYRQKVELELSNICNDVMTVIDEHLIPSAAAGESTVFYYKMKGDYYRYLAEFKAGNEKKEAADQSMKAYESATTAAEADLPPTHPIRLGLALNFSVFYYEILNSPERACHLAKQAFDEAISELDTLNEESYKDSTLIMQLLRDNLTLWTSDIPEDGDAQKVNGTAKLGGGEEAE*






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