Glyma12g33600 - SoyBase

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Report for Sequence Feature Glyma12g33600

Feature Type:	gene_model
Chromosome:	Gm12
Start:	36816725
stop:	36821278
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma12g33600

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G58120	AT	Annotation by Michelle Graham. TAIR10: Basic-leucine zipper (bZIP) transcription factor family protein \| chr3:21521289-21523078 REVERSE LENGTH=329	SoyBase	E_val: 8.00E-118	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0009410	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to xenobiotic stimulus	SoyBase	N/A	ISS
GO:0030968	GO-bp	Annotation by Michelle Graham. GO Biological Process: endoplasmic reticulum unfolded protein response	SoyBase	N/A	ISS
GO:0045893	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0043565	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding	SoyBase	N/A	ISS
GO:0046983	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein dimerization activity	SoyBase	N/A	ISS
PTHR13301	Panther	X-BOX TRANSCRIPTION FACTOR-RELATED	JGI		ISS
PTHR13301:SF29	Panther		JGI		ISS
PF07716	PFAM	Basic region leucine zipper	JGI		ISS
UniRef100_C6TGZ0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=C6TGZ0_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_G7ZUL8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Transcription factor bZIP48 n=2 Tax=Medicago truncatula RepID=G7ZUL8_MEDTR	SoyBase	E_val: 8.00E-144	ISS

Expression Patterns of Glyma12g33600

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma12g33600

Paralog	Evidence	Comments
Glyma13g36870	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma12g33600 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.12g208400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma12g33600

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma12g33600

Limit To All Plant Sequences

>Glyma12g33600.1   sequence type=CDS   gene model=Glyma12g33600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGCAATTACCTCCAAAGATCCCAAACATGTCACCAAGTTGGCCAGATTTCTCTTCACACCAACAGAAGATGCAATTGCCACCTCTTAATAACAACGGCACCATCACCAACAACTATCATCAGCACAATCAGAACCCTTCTTGGGTGGATGAGTTTCTCGACTTCTCCTCGGCCCGGCGCGGCGTTCACCGGCGGTCGGTGAGCGATTCCATCACCTACTTGGATTCACCAGTGAAGTGTGGAGGGAATAAAAACAACAACAACAATGAGAACGAGTTTGACAAGTTTGATGATGAACAATTCATGTCCATGTTCACGGATGAAGTAGTGCTCTCTGGGGTCCCCTTGCCACCACCAACCACCTTGTCCTCCTCTAACCCTTCAAGCCCTTACGATCAGAACTTCATCAATGATGAGAAGGAGAAGAAGGAGGAGGAAGAGGAGCACCACCACCACCACCAATTGAAAAATGAAGCAGATGAGGTTGAAAGCCAATGCAAACAGGAAATTATGCAGCTTCCAAATGACACCAATACTTGTTCTTCCAGCGAGAGAATTACTGACCCCAAGAGAGTCAAAAGAATCTTGGCTAATAGACAATCTGCACAAAGATCGCGAGTGAGGAAGCTGCAATACATATCAGAGCTTGAGCGAAGTGTAACTTCATTACAGGCCGAAGTTTCAGTGCTGTCTCCAAGGGTTGCATTTTTAGATCATCAACGATTGCTTCTAAATGTCGACAACAGTGCTCTCAAGCAAAGAATCGCTGCCCTTGCTCAAGACAAGATCTTTAAAGATGCTCATCAAGAGGCACTGAAGAGGGAGATAGAGAGACTTAGGCAAGTTTATTACCAACAAAGCCTCAAGAAGATGGAAAATGCTGCTGGGTCACCATTACCATCACCAAAGCCTATATGTGATGCTCAAACAGAAAAGGAAGCACAACTTCTCAACGCTTGA

Predicted protein sequences of Glyma12g33600

Limit To All Plant Sequences

>Glyma12g33600.1   sequence type=predicted peptide   gene model=Glyma12g33600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAQLPPKIPNMSPSWPDFSSHQQKMQLPPLNNNGTITNNYHQHNQNPSWVDEFLDFSSARRGVHRRSVSDSITYLDSPVKCGGNKNNNNNENEFDKFDDEQFMSMFTDEVVLSGVPLPPPTTLSSSNPSSPYDQNFINDEKEKKEEEEEHHHHHQLKNEADEVESQCKQEIMQLPNDTNTCSSSERITDPKRVKRILANRQSAQRSRVRKLQYISELERSVTSLQAEVSVLSPRVAFLDHQRLLLNVDNSALKQRIAALAQDKIFKDAHQEALKREIERLRQVYYQQSLKKMENAAGSPLPSPKPICDAQTEKEAQLLNA*

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