Glyma12g33560 - SoyBase

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Report for Sequence Feature Glyma12g33560

Feature Type:	gene_model
Chromosome:	Gm12
Start:	36799550
stop:	36802547
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma12g33560

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G45970	AT	Annotation by Michelle Graham. TAIR10: RAC-like 2 \| chr5:18643761-18645758 FORWARD LENGTH=201	SoyBase	E_val: 3.00E-94	ISS
GO:0007015	GO-bp	Annotation by Michelle Graham. GO Biological Process: actin filament organization	SoyBase	N/A	ISS
GO:0007264	GO-bp	Annotation by Michelle Graham. GO Biological Process: small GTPase mediated signal transduction	SoyBase	N/A	ISS
GO:0009832	GO-bp	Annotation by Michelle Graham. GO Biological Process: plant-type cell wall biogenesis	SoyBase	N/A	ISS
GO:0010413	GO-bp	Annotation by Michelle Graham. GO Biological Process: glucuronoxylan metabolic process	SoyBase	N/A	ISS
GO:0045492	GO-bp	Annotation by Michelle Graham. GO Biological Process: xylan biosynthetic process	SoyBase	N/A	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0005525	GO-mf	Annotation by Michelle Graham. GO Molecular Function: GTP binding	SoyBase	N/A	ISS
KOG0393	KOG	Ras-related small GTPase, Rho type	JGI		ISS
PTHR24072	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24072:SF353	Panther		JGI		ISS
PF00071	PFAM	Ras family	JGI		ISS
UniRef100_I1LUK0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LUK0_SOYBN	SoyBase	E_val: 1.00E-124	ISS
UniRef100_Q40220	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Rac-like GTP-binding protein RAC2 n=1 Tax=Lotus japonicus RepID=RAC2_LOTJA	SoyBase	E_val: 5.00E-100	ISS

Expression Patterns of Glyma12g33560

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma12g33560 not represented in the dataset	Glyma12g33560 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma12g33560 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.12g208000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma12g33560

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma12g33560

Limit To All Plant Sequences

>Glyma12g33560.2   sequence type=transcript   gene model=Glyma12g33560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGACTAAGGTAATGTTGCTAGGGAATGCTTATGTTCTAAATACTAATTATTCACTCACTCCCTTGTACAATACTTAACCAACTAACACCACTACAGCACCAAACGACTCCTTTGCTGCTCTGGCCTTCCCCTTAAAGAAACAGAAAGCCAAATGCAATAATGGTCAAGATAAAAGAGGCACACTAAAGTTGGTGCTGAGGGACTCTGGCTTATTAAATGCTGATCATCCCCTCCATTTCTTTTCAAAATTCAAATTGACCCTTCTGGCCTTCTCCTACTTCTTCTATCCATTGTTTCATTTTTATTTCCAAATTTTCAGGTGAAAGGAACATAGGAACTTGAGGTGATGAAAGCAACAGAATGTTAAAGGAAGCTTTGATGTGAGGTGAGGTGAGGAAATCAGAAGAGGAGTTTGAAAATGAGTACAGCAAGATTCATCAAGTGTGTTACTGTCGGAGATGGAGCCGTGGGAAAGACCTGTATGCTCATCTCTTACACCAGCAACACATTCCCCACGGATTATGTTCCTACAGTTTTTGACAACTTCAGTGCAAATGTGGTGGTTGATGGAAGCACAGTTAATCTCGGATTATGGGACACTGCTGGACAGGAGGATTACAACAGGCTTAGGCCCTTGAGCTACAGAGGAGCAGATGTGTTTTTGCTTGCATTTTCCCTCCTCAGCAGAGCCAGCTATGAAAATATCTCTAAGAAGTGGATTCCTGAACTGAGACATTATGCCCCCACTGTGCCAATTGTACTTGTGGGAACCAAACTTGATTTGAGGGAAGATAGGCAGTATTTGATTGATCATCCTGGAGCCACACCTATAACTACTGCTCAGGGAGAAGAGCTGAAGAAGGCAATTGGTGCTGCTGTGTACATAGAATGCAGCTCAAAGACTCAGCAGAATGTGAAGGCTGTGTTTGATGCTGCAATCAAGGTTGTTTTGCAGCCACCAAAGCCAAAGAAAAAAAGAAAGAAGAACAGGACATGCGTTTTCCTTTAATTGGTGTTCATGAATTTGATTTGCATCTTGTAACATTCGTAACCTTCTCCTAAGTTTTCCTTTCTTCTCTTTTTTCACTTTATTTGATTGCAAGAATCGCCCTTTTGAACATATGTATTCCAAACTCTACCCTCTTTCCGTTTTCTTATATTTTTTGTTGCTGGTGGATCTAAATGATGTTGCAACGTATCTACTGGATATATACAAGGAGAGGATGTACTCAATTAAACATAAATTTTGTGATACGAAAAGCATAATAGCATTAATCATC

>Glyma12g33560.3   sequence type=transcript   gene model=Glyma12g33560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATTGTAGCATTAGTTATTGGGTAGCCATTAGCCAACCAATGTTTATGTTCATTTATTTTACAATGTTTTAAATGTAAAATATTGATTAATTTTGTCGAAGAGTAACTCTATTAGAGATTTGTCTAACCACTTATAAGAGAATCTTTCTTTTCAATCATATTTTTTTTTTTCAAAATATGAGACTTTACTTAAAGTATCTAAGTCCAGCTCAACTCAGACTAAGCACCAAACGACTCCTTTGCTGCTCTGGCCTTCCCCTTAAAGAAACAGAAAGCCAAATGCAATAATGGTCAAGATAAAAGAGGCACACTAAAGTTGGTGCTGAGGGACTCTGGCTTATTAAATGCTGATCATCCCCTCCATTTCTTTTCAAAATTCAAATTGACCCTTCTGGCCTTCTCCTACTTCTTCTATCCATTGTTTCATTTTTATTTCCAAATTTTCAGGTGAAAGGAACATAGGAACTTGAGGTGATGAAAGCAACAGAATGTTAAAGGAAGCTTTGATGTGAGGTGAGGTGAGGAAATCAGAAGAGGAGTTTGAAAATGAGTACAGCAAGATTCATCAAGTGTGTTACTGTCGGAGATGGAGCCGTGGGAAAGACCTGTATGCTCATCTCTTACACCAGCAACACATTCCCCACGGATTATGTTCCTACAGTTTTTGACAACTTCAGTGCAAATGTGGTGGTTGATGGAAGCACAGTTAATCTCGGATTATGGGACACTGCTGGACAGGAGGATTACAACAGGCTTAGGCCCTTGAGCTACAGAGGAGCAGATGTGTTTTTGCTTGCATTTTCCCTCCTCAGCAGAGCCAGCTATGAAAATATCTCTAAGAAGTGGATTCCTGAACTGAGACATTATGCCCCCACTGTGCCAATTGTACTTGTGGGAACCAAACTTGATTTGAGGGAAGATAGGCAGTATTTGATTGATCATCCTGGAGCCACACCTATAACTACTGCTCAGGCAGGGAGAAGAGCTGAAGAAGGCAATTGGTGCTGCTGTGTACATAGAATGCAGCTCAAAGACTCAGCAGAATGTGAAGGCTGTGTTTGATGCTGCAATCAAGGTTGTTTTGCAGCCACCAAAGCCAAAGAAAAAAAGAAAGAAGAACAGGACATGCGTTTTCCTTTAATTGGTGTTCATGAATTTGATTTGCATCTTGTAACATTCGTAACCTTCTCCTAAGTTTTCCTTTCTTCTCTTTTTTCACTTTATTTGATTGCAAGAATCGCCCTTTTGAACATATGTATTCCAAACTCTACCCTCTTTCCGTTTTCTTATATTTTTTGTTGCTGGTGGATCTAAATGATGTTGCAACGTATCTACTGGATATATACAAGGAGAGGATGTACTCAATTAAACATAAATTTTGTGATACGAAAAGCATAATAGCATTAATCATCATTTTTCTGTTGTTCAGC

>Glyma12g33560.4   sequence type=transcript   gene model=Glyma12g33560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGACTAAGGTAATGTTGCTAGGGAATGCTTATGTTCTAAATACTAATTATTCACTCACTCCCTTGTACAATACTTAACCAACTAACACCACTACAGCACCAAACGACTCCTTTGCTGCTCTGGCCTTCCCCTTAAAGAAACAGAAAGCCAAATGCAATAATGGTCAAGATAAAAGAGGCACACTAAAGTTGGTGCTGAGGGACTCTGGCTTATTAAATGCTGATCATCCCCTCCATTTCTTTTCAAAATTCAAATTGACCCTTCTGGCCTTCTCCTACTTCTTCTATCCATTGTTTCATTTTTATTTCCAAATTTTCAGGTGAAAGGAACATAGGAACTTGAGGTGATGAAAGCAACAGAATGTTAAAGGAAGCTTTGATGTGAGGTGAGGTGAGGAAATCAGAAGAGGAGTTTGAAAATGAGTACAGCAAGATTCATCAAGTGTGTTACTGTCGGAGATGGAGCCGTGGGAAAGACCTGTATGCTCATCTCTTACACCAGCAACACATTCCCCACGGATTATGTTCCTACAGTTTTTGACAACTTCAGTGCAAATGTGGTGGTTGATGGAAGCACAGTTAATCTCGGATTATGGGACACTGCTGGACAGGAGGATTACAACAGGCTTAGGCCCTTGAGCTACAGAGGAGCAGATGTGTTTTTGCTTGCATTTTCCCTCCTCAGCAGAGCCAGCTATGAAAATATCTCTAAGAAGTGGATTCCTGAACTGAGACATTATGCCCCCACTGTGCCAATTGTACTTGTGGGAACCAAACTTGATTTGAGGGAAGATAGGCAGTATTTGATTGATCATCCTGGAGCCACACCTATAACTACTGCTCAGGGAGAAGAGCTGAAGAAGGCAATTGGTGCTGCTGTGTACATAGAATGCAGCTCAAAGACTCAGCAGGTTCTTATTTTTCATTGCTTATAGCTAGACAAGGTTTTAGATACCATCAAAGCAAGTTGCACTAGAAGGGTCTTAATACAATATAAAATGATACCAAACATCTTCAGCTTTTGGAATAGTTGGTTTTAAGTATTACAAGGGAATTGTTATAGCAGGAGATGTGCCAATTATTGTTTAAATATTAACTGCATTAGATTTTACAAAACCGATATGCCCACAGCATTTTTTATGCAACTTTTAACAGATATTTGTACATGCTTAAACGGTAGAATAGCGGTTCATCAAATTTCCTTGATCATTTCACCTAACAAAGTATCAATCAAGAATAAAATATATACAGTTAAAACATCCTGTTTAACGCAAATTGTATAGTAACCATTGCACTTTAGTCATTTTGCTGCAGATGTCAGACCACTCTTGTAAATTATT

Coding sequences of Glyma12g33560

Limit To All Plant Sequences

>Glyma12g33560.1   sequence type=CDS   gene model=Glyma12g33560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTACAGCAAGATTCATCAAGTGTGTTACTGTCGGAGATGGAGCCGTGGGAAAGACCTGTATGCTCATCTCTTACACCAGCAACACATTCCCCACGGATTATGTTCCTACAGTTTTTGACAACTTCAGTGCAAATGTGGTGGTTGATGGAAGCACAGTTAATCTCGGATTATGGGACACTGCTGGACAGGAGGATTACAACAGGCTTAGGCCCTTGAGCTACAGAGGAGCAGATGTGTTTTTGCTTGCATTTTCCCTCCTCAGCAGAGCCAGCTATGAAAATATCTCTAAGAAGTGGATTCCTGAACTGAGACATTATGCCCCCACTGTGCCAATTGTACTTGTGGGAACCAAACTTGATTTGAGGGAAGATAGGCAGTATTTGATTGATCATCCTGGAGCCACACCTATAACTACTGCTCAGGCAGAAGAGCTGAAGAAGGCAATTGGTGCTGCTGTGTACATAGAATGCAGCTCAAAGACTCAGCAGAATGTGAAGGCTGTGTTTGATGCTGCAATCAAGGTTGTTTTGCAGCCACCAAAGCCAAAGAAAAAAAGAAAGAAGAACAGGACATGCGTTTTCCTTTAA

>Glyma12g33560.2   sequence type=CDS   gene model=Glyma12g33560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTACAGCAAGATTCATCAAGTGTGTTACTGTCGGAGATGGAGCCGTGGGAAAGACCTGTATGCTCATCTCTTACACCAGCAACACATTCCCCACGGATTATGTTCCTACAGTTTTTGACAACTTCAGTGCAAATGTGGTGGTTGATGGAAGCACAGTTAATCTCGGATTATGGGACACTGCTGGACAGGAGGATTACAACAGGCTTAGGCCCTTGAGCTACAGAGGAGCAGATGTGTTTTTGCTTGCATTTTCCCTCCTCAGCAGAGCCAGCTATGAAAATATCTCTAAGAAGTGGATTCCTGAACTGAGACATTATGCCCCCACTGTGCCAATTGTACTTGTGGGAACCAAACTTGATTTGAGGGAAGATAGGCAGTATTTGATTGATCATCCTGGAGCCACACCTATAACTACTGCTCAGGGAGAAGAGCTGAAGAAGGCAATTGGTGCTGCTGTGTACATAGAATGCAGCTCAAAGACTCAGCAGAATGTGAAGGCTGTGTTTGATGCTGCAATCAAGGTTGTTTTGCAGCCACCAAAGCCAAAGAAAAAAAGAAAGAAGAACAGGACATGCGTTTTCCTTTAA

>Glyma12g33560.3   sequence type=CDS   gene model=Glyma12g33560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTACAGCAAGATTCATCAAGTGTGTTACTGTCGGAGATGGAGCCGTGGGAAAGACCTGTATGCTCATCTCTTACACCAGCAACACATTCCCCACGGATTATGTTCCTACAGTTTTTGACAACTTCAGTGCAAATGTGGTGGTTGATGGAAGCACAGTTAATCTCGGATTATGGGACACTGCTGGACAGGAGGATTACAACAGGCTTAGGCCCTTGAGCTACAGAGGAGCAGATGTGTTTTTGCTTGCATTTTCCCTCCTCAGCAGAGCCAGCTATGAAAATATCTCTAAGAAGTGGATTCCTGAACTGAGACATTATGCCCCCACTGTGCCAATTGTACTTGTGGGAACCAAACTTGATTTGAGGGAAGATAGGCAGTATTTGATTGATCATCCTGGAGCCACACCTATAACTACTGCTCAGGCAGGGAGAAGAGCTGAAGAAGGCAATTGGTGCTGCTGTGTACATAGAATGCAGCTCAAAGACTCAGCAGAATGTGAAGGCTGTGTTTGA

>Glyma12g33560.4   sequence type=CDS   gene model=Glyma12g33560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTACAGCAAGATTCATCAAGTGTGTTACTGTCGGAGATGGAGCCGTGGGAAAGACCTGTATGCTCATCTCTTACACCAGCAACACATTCCCCACGGATTATGTTCCTACAGTTTTTGACAACTTCAGTGCAAATGTGGTGGTTGATGGAAGCACAGTTAATCTCGGATTATGGGACACTGCTGGACAGGAGGATTACAACAGGCTTAGGCCCTTGAGCTACAGAGGAGCAGATGTGTTTTTGCTTGCATTTTCCCTCCTCAGCAGAGCCAGCTATGAAAATATCTCTAAGAAGTGGATTCCTGAACTGAGACATTATGCCCCCACTGTGCCAATTGTACTTGTGGGAACCAAACTTGATTTGAGGGAAGATAGGCAGTATTTGATTGATCATCCTGGAGCCACACCTATAACTACTGCTCAGGGAGAAGAGCTGAAGAAGGCAATTGGTGCTGCTGTGTACATAGAATGCAGCTCAAAGACTCAGCAGGTTCTTATTTTTCATTGCTTATAG

Predicted protein sequences of Glyma12g33560

Limit To All Plant Sequences

>Glyma12g33560.1   sequence type=predicted peptide   gene model=Glyma12g33560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLLSRASYENISKKWIPELRHYAPTVPIVLVGTKLDLREDRQYLIDHPGATPITTAQAEELKKAIGAAVYIECSSKTQQNVKAVFDAAIKVVLQPPKPKKKRKKNRTCVFL*

>Glyma12g33560.2   sequence type=predicted peptide   gene model=Glyma12g33560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLLSRASYENISKKWIPELRHYAPTVPIVLVGTKLDLREDRQYLIDHPGATPITTAQGEELKKAIGAAVYIECSSKTQQNVKAVFDAAIKVVLQPPKPKKKRKKNRTCVFL*

>Glyma12g33560.3   sequence type=predicted peptide   gene model=Glyma12g33560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLLSRASYENISKKWIPELRHYAPTVPIVLVGTKLDLREDRQYLIDHPGATPITTAQAGRRAEEGNWCCCVHRMQLKDSAECEGCV*

>Glyma12g33560.4   sequence type=predicted peptide   gene model=Glyma12g33560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLLSRASYENISKKWIPELRHYAPTVPIVLVGTKLDLREDRQYLIDHPGATPITTAQGEELKKAIGAAVYIECSSKTQQVLIFHCL*

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