Report for Sequence Feature Glyma12g33550
Feature Type: gene_model
Chromosome: Gm12
Start: 36788972
stop: 36791282
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma12g33550
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G60860 AT
Annotation by Michelle Graham. TAIR10: RAB GTPase homolog A1F | chr5:24484750-24485565 FORWARD LENGTH=217
SoyBase E_val: 5.00E-126 ISS
GO:0007264 GO-bp
Annotation by Michelle Graham. GO Biological Process: small GTPase mediated signal transduction
SoyBase N/A ISS
GO:0015031 GO-bp
Annotation by Michelle Graham. GO Biological Process: protein transport
SoyBase N/A ISS
GO:0016192 GO-bp
Annotation by Michelle Graham. GO Biological Process: vesicle-mediated transport
SoyBase N/A ISS
GO:0005525 GO-mf
Annotation by Michelle Graham. GO Molecular Function: GTP binding
SoyBase N/A ISS
KOG0087
KOG
GTPase Rab11/YPT3, small G protein superfamily
JGI ISS
PTHR24073 Panther
FAMILY NOT NAMED
JGI ISS
PTHR24073:SF213 Panther
SUBFAMILY NOT NAMED
JGI ISS
PF00071 PFAM
Ras family
JGI ISS
UniRef100_C6SVT8 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6SVT8_SOYBN
SoyBase E_val: 5.00E-157 ISS
UniRef100_G7IFI5 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: GTP-binding protein ras-like protein n=2 Tax=Medicago truncatula RepID=G7IFI5_MEDTR
SoyBase E_val: 3.00E-125 ISS
Expression Patterns of Glyma12g33550
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma12g33550
Paralog Evidence Comments
Glyma13g36910 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma12g33550 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.12g207900 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma12g33550
Coding sequences of Glyma12g33550
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma12g33550.1 sequence type=CDS gene model=Glyma12g33550 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGGTGCCGACGAAGACTACGATTACTTGTTCAAGCTGGTCCTCATCGGAGATTCGGGTGTTGGCAAGTCCAACCTCTTGTCCCGATTCACCCGAAACGAGTTCAGCTTGGAGACCAAATCCACCATCGGCGTCGAATTCGCCACGCGAAGCGTCCCCGTTGATAGCAAGCTCGTCAAGGCACAAATCTGGGACACTGCAGGCCAAGAAAGATATCGCGCTATTACAAGTGCATACTACCGAGGAGCCGTAGGTGCTTTGGTTGTGTACGATGTAACCCGACACGTGACATTCGAGAACGTGGAGAGATGGTTGAAGGAGCTTCGAGATCACACAGAAGCATACGTTGTGGTCATGCTGGTGGGAAACAAAGCAGACCTTCGACATTTGCGTGCAGTGTCCACAGAAGAAGCCACAGAATTTGCAGAGAAAGAGAGCATTTACTTCATGGAAACCTCTGCCCTTGAGTCCTTGAACGTTGACAATGCCTTCATAGAAGTGCTGACTCAGATATACAACGTTGTGAGTAGGAAGACTCTTGAGACTGTGGATGATGACCCTTCTACGAAAGCCTTGCCCAAAGGGGAGACCATAGTTATTGGAACCAAAGATGATGATGTCTCAGCTGTTAAAAAGAGTGGATGCTGTTCCACATAG
Predicted protein sequences of Glyma12g33550
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma12g33550.1 sequence type=predicted peptide gene model=Glyma12g33550 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MGADEDYDYLFKLVLIGDSGVGKSNLLSRFTRNEFSLETKSTIGVEFATRSVPVDSKLVKAQIWDTAGQERYRAITSAYYRGAVGALVVYDVTRHVTFENVERWLKELRDHTEAYVVVMLVGNKADLRHLRAVSTEEATEFAEKESIYFMETSALESLNVDNAFIEVLTQIYNVVSRKTLETVDDDPSTKALPKGETIVIGTKDDDVSAVKKSGCCST*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
