Glyma12g33350 - SoyBase

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Report for Sequence Feature Glyma12g33350

Feature Type:	gene_model
Chromosome:	Gm12
Start:	36665833
stop:	36669716
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma12g33350

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G36160	AT	Annotation by Michelle Graham. TAIR10: Tyrosine transaminase family protein \| chr5:14233261-14235129 REVERSE LENGTH=420	SoyBase	E_val: 1.00E-164	ISS
GO:0006520	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular amino acid metabolic process	SoyBase	N/A	ISS
GO:0006559	GO-bp	Annotation by Michelle Graham. GO Biological Process: L-phenylalanine catabolic process	SoyBase	N/A	ISS
GO:0006572	GO-bp	Annotation by Michelle Graham. GO Biological Process: tyrosine catabolic process	SoyBase	N/A	ISS
GO:0009058	GO-bp	Annotation by Michelle Graham. GO Biological Process: biosynthetic process	SoyBase	N/A	ISS
GO:0042218	GO-bp	Annotation by Michelle Graham. GO Biological Process: 1-aminocyclopropane-1-carboxylate biosynthetic process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0004838	GO-mf	Annotation by Michelle Graham. GO Molecular Function: L-tyrosine:2-oxoglutarate aminotransferase activity	SoyBase	N/A	ISS
GO:0008483	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transaminase activity	SoyBase	N/A	ISS
GO:0016740	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity	SoyBase	N/A	ISS
GO:0016847	GO-mf	Annotation by Michelle Graham. GO Molecular Function: 1-aminocyclopropane-1-carboxylate synthase activity	SoyBase	N/A	ISS
GO:0030170	GO-mf	Annotation by Michelle Graham. GO Molecular Function: pyridoxal phosphate binding	SoyBase	N/A	ISS
KOG0259	KOG	Tyrosine aminotransferase	JGI		ISS
PTHR11751	Panther	SUBGROUP I AMINOTRANSFERASE RELATED	JGI		ISS
PTHR11751:SF28	Panther	VALINE-PYRUVATE TRANSAMINASE-RELATED	JGI		ISS
PF00155	PFAM	Aminotransferase class I and II	JGI		ISS
UniRef100_B9MYE9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Aminotransferase family protein n=1 Tax=Populus trichocarpa RepID=B9MYE9_POPTR	SoyBase	E_val: 0	ISS
UniRef100_I1LUI0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LUI0_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma12g33350

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma12g33350 not represented in the dataset	Glyma12g33350 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma12g33350

Paralog	Evidence	Comments
Glyma13g37080	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma12g33350 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.12g205900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma12g33350

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma12g33350

Limit To All Plant Sequences

>Glyma12g33350.2   sequence type=transcript   gene model=Glyma12g33350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTTTTCTTATTACAGTACAAAATGAAGTACAAGTACCATTTATCTTTCTCAATTGGAATCTTATCTTTTCCCTACACTTTCTTTAAATTCACTTATATTGGTTCACCAAACTCAAACACCATATACTGGGCGAAGAGAATGGAGGATGGAAGTGAGAAATGGAATTTTCAGGGGAACAAGAAGCTGAATGCTTCATCCATCTCTGTGAGAGGGGTCTATAACATGTTGATGGAGAGAGTCAACAATAGCCGAGACAAGAAACCTTTGGTTCCTCTCTGTCGTGTAGATCCCACCGAGAACCCATTGTTTCGGACTACCCCAGAAGCTACTGATTCTGTTTCAACTGCTGTTAACTCCTATAACTTCAACTGTTACCCTCCCACCGTTGGCTTACCTGATGCAAAGAGACCAGGGTACCCGCAATATGATTCTCGTGCTAGTTGTTGTCTCCTCGAAGTACGACATTTTGATCTTTTGCCCGAGAGAGGTTGGGAGGTTGACCTTGATTCCCTTGAATCTCAAGCAGATGAAAACACAGTGGCCATGGTCCTCATCAATCCTAGCAATCCATGTGGAAATGTCTTCACATACCAACATTTAAAAAGGGTTGCTGAAATTGCTAGGAAACTTGGAATCTTTGTCATTTCTGATGAAGTTTATGCCCATGTAACTTATGGAAGCAATCCATTTGTTCCCATGGGGGTGTTTTCTTCAATAGTTCCGGTCATTACAATTGGATCTTTATCAAAGAGATGGTTAGTTCCTGGTTGGAGAACTGGTTGGATAGCCACATGTGACCCTCATGGAATTTTTCAGAAAACTGGGGTTGTGAAAAGTATCATCAGTTATTTGGAGATCACAACTGACCCTCCAACCTTCTTGCAGGCAGCAATACCTGAAATCCTTGGCAAAACAAAAGATGATTTCCTTTCAAAAAATCTTAATATACTGAGGGAGACTGCAAACATATTCTATGATTTATGTAAGGAGATCCCTTGCTTAACATGCCCTCACAAACCAGAAGGAGCAATGTGTGTCATGGTGGAGATTAACTTCTCACAAATTAAGGACATTGTTGATGATATGGATTTCTGTGCCAAGCTAGCTGAAGAGGAATCTGTCCTTCTTCTTCCAGGTGTCACGGTTGGACTGAAGAATTGGCTTCGAATTAGTTTTGCTGTCGACACTTCTAATCTTGTAGAAGGCCTTAGCAGGATAAAAGCATTTTGCCTTCGATATGCAAAGATGCCATGAAGTCATGTCACATGGTAGGGTGTGGAAGATGTTGATTTCTTAGGGATATCTTATCAAAGACCATTTATTTAGCAAAATTTATAATGTATGGAGATATTTCTTCTTCTCACACGGTAGGGTGAGGGAGGTGTTGATTTAGAGGCATGTTATATCTTCTTTTAGGCATTTTATATCTTAACAAGACCATTTATTGACAGTTATAAAGGAGGGTTCATAACACTTCTAGCGGAGAATATATTTTGTTTAAAAGAATACTACAACAATAATAAATATAAAAATTTAGAATTATCTACCTAAATATCAATTTTCGAAGCCTTATTTTTT

Coding sequences of Glyma12g33350

Limit To All Plant Sequences

>Glyma12g33350.1   sequence type=CDS   gene model=Glyma12g33350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGTACAAGTACCATTTATCTTTCTCAATTGGAATCTTATCTTTTCCCTACACTTTCTTTAAATTCACTTATATTGGTTCACCAAACTCAAACACCATATACTGGGCGAAGAGAATGGAGGATGGAAGTGAGAAATGGAATTTTCAGGGGAACAAGAAGCTGAATGCTTCATCCATCTCTGTGAGAGGGGTCTATAACATGTTGATGGAGAGAGTCAACAATAGCCGAGACAAGAAACCTTTGGTTCCTCTCTGTCGTGTAGATCCCACCGAGAACCCATTGTTTCGGACTACCCCAGAAGCTACTGATTCTGTTTCAACTGCTGTTAACTCCTATAACTTCAACTGTTACCCTCCCACCGTTGGCTTACCTGATGCAAAGAGGGCTATTGCAAATTATCTCTCTTCTGATCTTCCATACCAATTATCACCAGAGAATGTTTTTCTCACCATCGGTGGCACACAAGCTATAGATATAATCTTGCCTGCCCTTGCACGTTCTGATGCCAACATTCTCCTTCCAAGACCAGGGTACCCGCAATATGATTCTCGTGCTAGTTGTTGTCTCCTCGAAGTACGACATTTTGATCTTTTGCCCGAGAGAGGTTGGGAGGTTGACCTTGATTCCCTTGAATCTCAAGCAGATGAAAACACAGTGGCCATGGTCCTCATCAATCCTAGCAATCCATGTGGAAATGTCTTCACATACCAACATTTAAAAAGGGTTGCTGAAATTGCTAGGAAACTTGGAATCTTTGTCATTTCTGATGAAGTTTATGCCCATGTAACTTATGGAAGCAATCCATTTGTTCCCATGGGGGTGTTTTCTTCAATAGTTCCGGTCATTACAATTGGATCTTTATCAAAGAGATGGTTAGTTCCTGGTTGGAGAACTGGTTGGATAGCCACATGTGACCCTCATGGAATTTTTCAGAAAACTGGGGTTGTGAAAAGTATCATCAGTTATTTGGAGATCACAACTGACCCTCCAACCTTCTTGCAGGCAGCAATACCTGAAATCCTTGGCAAAACAAAAGATGATTTCCTTTCAAAAAATCTTAATATACTGAGGGAGACTGCAAACATATTCTATGATTTATGTAAGGAGATCCCTTGCTTAACATGCCCTCACAAACCAGAAGGAGCAATGTGTGTCATGGTGGAGATTAACTTCTCACAAATTAAGGACATTGTTGATGATATGGATTTCTGTGCCAAGCTAGCTGAAGAGGAATCTGTCCTTCTTCTTCCAGGTGTCACGGTTGGACTGAAGAATTGGCTTCGAATTAGTTTTGCTGTCGACACTTCTAATCTTGTAGAAGGCCTTAGCAGGATAAAAGCATTTTGCCTTCGATATGCAAAGATGCCATGA

>Glyma12g33350.2   sequence type=CDS   gene model=Glyma12g33350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGTACAAGTACCATTTATCTTTCTCAATTGGAATCTTATCTTTTCCCTACACTTTCTTTAAATTCACTTATATTGGTTCACCAAACTCAAACACCATATACTGGGCGAAGAGAATGGAGGATGGAAGTGAGAAATGGAATTTTCAGGGGAACAAGAAGCTGAATGCTTCATCCATCTCTGTGAGAGGGGTCTATAACATGTTGATGGAGAGAGTCAACAATAGCCGAGACAAGAAACCTTTGGTTCCTCTCTGTCGTGTAGATCCCACCGAGAACCCATTGTTTCGGACTACCCCAGAAGCTACTGATTCTGTTTCAACTGCTGTTAACTCCTATAACTTCAACTGTTACCCTCCCACCGTTGGCTTACCTGATGCAAAGAGACCAGGGTACCCGCAATATGATTCTCGTGCTAGTTGTTGTCTCCTCGAAGTACGACATTTTGATCTTTTGCCCGAGAGAGGTTGGGAGGTTGACCTTGATTCCCTTGAATCTCAAGCAGATGAAAACACAGTGGCCATGGTCCTCATCAATCCTAGCAATCCATGTGGAAATGTCTTCACATACCAACATTTAAAAAGGGTTGCTGAAATTGCTAGGAAACTTGGAATCTTTGTCATTTCTGATGAAGTTTATGCCCATGTAACTTATGGAAGCAATCCATTTGTTCCCATGGGGGTGTTTTCTTCAATAGTTCCGGTCATTACAATTGGATCTTTATCAAAGAGATGGTTAGTTCCTGGTTGGAGAACTGGTTGGATAGCCACATGTGACCCTCATGGAATTTTTCAGAAAACTGGGGTTGTGAAAAGTATCATCAGTTATTTGGAGATCACAACTGACCCTCCAACCTTCTTGCAGGCAGCAATACCTGAAATCCTTGGCAAAACAAAAGATGATTTCCTTTCAAAAAATCTTAATATACTGAGGGAGACTGCAAACATATTCTATGATTTATGTAAGGAGATCCCTTGCTTAACATGCCCTCACAAACCAGAAGGAGCAATGTGTGTCATGGTGGAGATTAACTTCTCACAAATTAAGGACATTGTTGATGATATGGATTTCTGTGCCAAGCTAGCTGAAGAGGAATCTGTCCTTCTTCTTCCAGGTGTCACGGTTGGACTGAAGAATTGGCTTCGAATTAGTTTTGCTGTCGACACTTCTAATCTTGTAGAAGGCCTTAGCAGGATAAAAGCATTTTGCCTTCGATATGCAAAGATGCCATGA

Predicted protein sequences of Glyma12g33350

Limit To All Plant Sequences

>Glyma12g33350.1   sequence type=predicted peptide   gene model=Glyma12g33350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKYKYHLSFSIGILSFPYTFFKFTYIGSPNSNTIYWAKRMEDGSEKWNFQGNKKLNASSISVRGVYNMLMERVNNSRDKKPLVPLCRVDPTENPLFRTTPEATDSVSTAVNSYNFNCYPPTVGLPDAKRAIANYLSSDLPYQLSPENVFLTIGGTQAIDIILPALARSDANILLPRPGYPQYDSRASCCLLEVRHFDLLPERGWEVDLDSLESQADENTVAMVLINPSNPCGNVFTYQHLKRVAEIARKLGIFVISDEVYAHVTYGSNPFVPMGVFSSIVPVITIGSLSKRWLVPGWRTGWIATCDPHGIFQKTGVVKSIISYLEITTDPPTFLQAAIPEILGKTKDDFLSKNLNILRETANIFYDLCKEIPCLTCPHKPEGAMCVMVEINFSQIKDIVDDMDFCAKLAEEESVLLLPGVTVGLKNWLRISFAVDTSNLVEGLSRIKAFCLRYAKMP*

>Glyma12g33350.2   sequence type=predicted peptide   gene model=Glyma12g33350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKYKYHLSFSIGILSFPYTFFKFTYIGSPNSNTIYWAKRMEDGSEKWNFQGNKKLNASSISVRGVYNMLMERVNNSRDKKPLVPLCRVDPTENPLFRTTPEATDSVSTAVNSYNFNCYPPTVGLPDAKRPGYPQYDSRASCCLLEVRHFDLLPERGWEVDLDSLESQADENTVAMVLINPSNPCGNVFTYQHLKRVAEIARKLGIFVISDEVYAHVTYGSNPFVPMGVFSSIVPVITIGSLSKRWLVPGWRTGWIATCDPHGIFQKTGVVKSIISYLEITTDPPTFLQAAIPEILGKTKDDFLSKNLNILRETANIFYDLCKEIPCLTCPHKPEGAMCVMVEINFSQIKDIVDDMDFCAKLAEEESVLLLPGVTVGLKNWLRISFAVDTSNLVEGLSRIKAFCLRYAKMP*

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