Glyma12g33320 - SoyBase

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Report for Sequence Feature Glyma12g33320

Feature Type:	gene_model
Chromosome:	Gm12
Start:	36643833
stop:	36645408
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma12g33320

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G03790	AT	Annotation by Michelle Graham. TAIR10: Zinc finger C-x8-C-x5-C-x3-H type family protein \| chr1:954589-955770 FORWARD LENGTH=393	SoyBase	E_val: 1.00E-79	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0010187	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of seed germination	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003676	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
PTHR14493	Panther	UNKEMPT-RELATED	JGI		ISS
UniRef100_D9ZIU9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: C3HL domain class transcription factor n=1 Tax=Malus x domestica RepID=D9ZIU9_MALDO	SoyBase	E_val: 3.00E-112	ISS
UniRef100_I1LUH8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LUH8_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma12g33320

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma12g33320

Paralog	Evidence	Comments
Glyma13g37101	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma12g33320 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.12g205700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma12g33320

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma12g33320

Limit To All Plant Sequences

>Glyma12g33320.1   sequence type=CDS   gene model=Glyma12g33320   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGCAGTGTCTGTGCCAAGCAGCACAAGTTTTACCCCTCTCACCAACTCCTTTCTCCAAAGAAAACCCTCAGAGAAATTGACATCCCTCCAAGGAAGCTCCTCACTCGCCGTGCCGCCGCATGCGTCGGCGGCACCGACGTGTACTCCTCCGAGGAGACCATGCTGCAAAAGTTCCTCCCTTCCAACGATTCTGACGAGGACGACCCTTACTCCTCAGACCACTTCCGGATGTTCGAGTTCAAGGTCCGCCGGTGCACCCGAAGCCGGAGCCACGACTGGACCGACTGCCCCTTCGCCCATCCGGGTGAAAAGGCACGCCGCCGTGACCCACGGCGGTATCACTACTCAGGAACAGTCTGTCCTGAGTATCCCCGCGGAGGGTGCAGCCGTGGCGATGCATGCGAATACGCCCATGGCGTGTTCGAATGCTGGCTGCACCCTTCCAGGTACAGAACGGAGGCCTGTAAGGATGGCAGGAACTGCAAGAGAAAGGTGTGTTTTTTCGCACACACCCCTCGCCAGCTGAGAATTTTGCCGGTAACAACATCTTCACCCTCTTCAAATGACATGCCATGCAAGAAGAACCTTAACAAACTCTTAAACCATGCTTCAAAATCAAACAACAACAACAACAACAACTGTTGTTTGTTTTGCCATTGTGGTGCTTCCTCTTCAGTTTCTCCAACCTCCACACTCTTCGGCATGTCGCATTTCTCGCCACCAGTATCACCATCCTCGTCCTCTTCACCACCTCCTTCTCCATTGAAACCCCGAAGCGTGGTTTCTCCTATTTCTCCAATTTCCCGTTACAGTGCTGTGAATATGAACCCTCATCACGGGGTGGTGAGTTACAAAGACATGTTCGCTGAGTTGGTGAATTCTTTGGAGGGTTTGAGTTTCAACGAGGGTTCTCCTGTTTCTGGTGCTAAAGCACCGAACTTTCCTTGGCTTGATGTTTCTCTTGAGGAACAGCAACAACAACAAAATCCTTTCATTGTTTCTTCTTTTGGCTGCGAAGATAAACAGAACCAGTTTATTTTTTCACCACCGTCCATTCAGACACCGACAAATGGGAAGTTCTGTCGCAACAGATTCATGGGCAACGACAACAAGGTTGTCGGTGGTGCTGACGTTAATGGCCCAGATCTCGCGTGGGTGAACGAGTTGCTGATGTAA

Predicted protein sequences of Glyma12g33320

Limit To All Plant Sequences

>Glyma12g33320.1   sequence type=predicted peptide   gene model=Glyma12g33320   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSVCAKQHKFYPSHQLLSPKKTLREIDIPPRKLLTRRAAACVGGTDVYSSEETMLQKFLPSNDSDEDDPYSSDHFRMFEFKVRRCTRSRSHDWTDCPFAHPGEKARRRDPRRYHYSGTVCPEYPRGGCSRGDACEYAHGVFECWLHPSRYRTEACKDGRNCKRKVCFFAHTPRQLRILPVTTSSPSSNDMPCKKNLNKLLNHASKSNNNNNNNCCLFCHCGASSSVSPTSTLFGMSHFSPPVSPSSSSSPPPSPLKPRSVVSPISPISRYSAVNMNPHHGVVSYKDMFAELVNSLEGLSFNEGSPVSGAKAPNFPWLDVSLEEQQQQQNPFIVSSFGCEDKQNQFIFSPPSIQTPTNGKFCRNRFMGNDNKVVGGADVNGPDLAWVNELLM*

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