SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G03560 | AT | Annotation by Michelle Graham. TAIR10: two-pore channel 1 | chr4:1580253-1585691 FORWARD LENGTH=733 | SoyBase | E_val: 0 | ISS |
| GO:0006811 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ion transport | SoyBase | N/A | ISS |
| GO:0006816 | GO-bp | Annotation by Michelle Graham. GO Biological Process: calcium ion transport | SoyBase | N/A | ISS |
| GO:0007030 | GO-bp | Annotation by Michelle Graham. GO Biological Process: Golgi organization | SoyBase | N/A | ISS |
| GO:0007033 | GO-bp | Annotation by Michelle Graham. GO Biological Process: vacuole organization | SoyBase | N/A | ISS |
| GO:0009556 | GO-bp | Annotation by Michelle Graham. GO Biological Process: microsporogenesis | SoyBase | N/A | ISS |
| GO:0009651 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to salt stress | SoyBase | N/A | ISS |
| GO:0009845 | GO-bp | Annotation by Michelle Graham. GO Biological Process: seed germination | SoyBase | N/A | ISS |
| GO:0010119 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of stomatal movement | SoyBase | N/A | ISS |
| GO:0019722 | GO-bp | Annotation by Michelle Graham. GO Biological Process: calcium-mediated signaling | SoyBase | N/A | ISS |
| GO:0052543 | GO-bp | Annotation by Michelle Graham. GO Biological Process: callose deposition in cell wall | SoyBase | N/A | ISS |
| GO:0055085 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transmembrane transport | SoyBase | N/A | ISS |
| GO:0080141 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of jasmonic acid biosynthetic process | SoyBase | N/A | ISS |
| GO:0000325 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plant-type vacuole | SoyBase | N/A | ISS |
| GO:0005773 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: vacuole | SoyBase | N/A | ISS |
| GO:0005774 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane | SoyBase | N/A | ISS |
| GO:0005794 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0005216 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ion channel activity | SoyBase | N/A | ISS |
| GO:0005245 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: voltage-gated calcium channel activity | SoyBase | N/A | ISS |
| GO:0005262 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: calcium channel activity | SoyBase | N/A | ISS |
| GO:0005509 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: calcium ion binding | SoyBase | N/A | ISS |
| PTHR10037 | Panther | VOLTAGE-GATED CATION CHANNEL (CALCIUM AND SODIUM) | JGI | ISS | |
| PTHR10037:SF61 | Panther | TWO PORE CALCIUM CHANNEL PROTEIN 1 | JGI | ISS | |
| PF00520 | PFAM | Ion transport protein | JGI | ISS | |
| UniRef100_I1M3S8 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1M3S8_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q94KI8 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Two pore calcium channel protein 1 n=2 Tax=Arabidopsis thaliana RepID=TPC1_ARATH | SoyBase | E_val: 0 | ISS |
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Glyma12g33165 not represented in the dataset |
Glyma12g33165 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma13g37280 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.12g204400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma12g33165.1 sequence type=CDS gene model=Glyma12g33165 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAGCAGTCTCTTCTGCTGAGAGGCGAAAGCAGTGACCAGAGTTACCAGTCGCGGGGAATATTCCGGCGCTCCGATGCTATCGCCTACGGCTCCAACTACGAGAAAGCCGCTGCGTTCATCGATCTGGCTGAAGATGGTGTTGGTCTCCCTGAGGAAATTCTCGACTCACCAAACTTCCAAAATTACATAAGATTTTATTTTATATTCACTAAATGCAATCTAATCTGGTCTCTTAGTTATTTTGCTTTGATAGTCCTGAATTTCCTGGAGAAGCCTCTATGGTGTAAAAAGCTTACCACAAATTCCTGCAACGATAGAGAGTATTTCTTTTTGGGACAATTGCCATATCTAACTGATGCAGAATGTCTTATTTATGAGGGAATAACTCTTGTTTTGCTAATCATACATACGTTCTTCCCATTGTCATACGAAGGATCCCGCATATATTGGAAAAATACTATTAATCAATTGAAGGTTTTCTCTCTATTAGTGCTAGTTGCTGATGTGATGCTCTATGCCCTTTTCTTGTCTCCACTGGCTTTTGATTTTCTACCTTTTAGAATTGCACCTTATATCAGAGTTGTTCTTTTCGTTCTGAATATTAGGGAGCTACGAGAAACCATCATTATCTTGGTTGGGATGCTTGACACATACTTAAATGTCTTGGCTTTGTGGCTTCTGTTTCTTCTTTTTGCTAGCTGGGTGGCGTATGTGTTTTTTGAGGATACAATACAGGGGAAAACAGTATTCACTTCCTATGGTACTACATTGTATCAGCTGTTTCTTTTATTTACCACATCCAATAATCCAGATGTTTGGGTTCCTGCATACAAGTCTTCACGTTGGTATTGCCTGTTTTTCATACTATTTGTGCTGGTGGGGGTTTACTTTGTTACAAACTTAATCCTTGCTGTTGTTTATGACAGTTTCAAGAGTGAGCTCGTAAAACAAGTTTTTGAGAAGGATTGTTTGAGAAGGAATGTGTTGGACAAAGCTTTTGATCTCTTGGATACGCATAAAGTTAGTAGTCTCAACAAAAATCAATGCATTAGGCTCTTTGAGGAGCTGAACAAGTACAGGACTTTGCCAAAAATCTCCAGGGAAGACTTTGAATTGATATTTGATGAGCTGGATGATAGTCATGATATAAAGATCAACAAGGATGAATTTGCGGATATTTGCAATGCCATTGCTTTAAAATTTCAGAAGGAAGATGTTATGTCTTACTTTGAGTATTTATCATTCTACCATTCACCCAGCTCAAAGAGATTAAAAGAATTCGTGAGGAGTCCTATGTTTGGATACCTAGTGTCCTTTGTTCTCGTACTAAATCTGGTGGCTGTTATTATTGAGACAACGCTTGATATAGAAAACAATTCTGCTCAAAAGGTGTGGCAAATGGTTGAGTTCGTTTTCGGGTGGGTATATGTAATAGAAATGGTTTTAAAGATTTATGCATATGGATTTGAGAACTATTGGCGGGATGGTCAAAACCGCTTTGATTTTATTGTCACGGTGACAATTGCCATTGGAGAAACTGTAACTTTTGCTGTACCTGATGATGATCTTCCTTTCATCTCAAATGGAGAATGGATTCGTTACCTTCTTCTTGCAAGAATGTTGAGATTAATAAGGATCCTAATGTATGTCAAGCGATACCGAGCCTTTGTGGCAACTTTATTGACTCTCATACCAAGTTTGATGCCATACCTAGGGATCATATTTTGTACCTTGTGTATTTATTGTTCAATTGGAGTACAGATTTTTGGTGGAATCGTTAATGCTGGAAACCCCGAATTGGAATTAACAGCTCTTGCTGAAAATGACTATTTGGTTTTCAATTTCAATGATTACCCGAATGGAATTGTGACACTTTTCAATTTTCTTGTCACGGCAACCTGGGACGAAGTAATGACAAGCTACAAGGAATTAACTGGGACTTCTTGGACCTATTTGTACTTCATTAGCTTCTACTTAATTACTGTTTTGCTGCTTTTAAACTTGATTATTGCTTTTGTCTTGGAGGCATTCTTTGCCGAAATGGAACTTGAGTCATCAGAAACTTGTGAAGGAAATGACAAGGAAGTTGAAGGAGATAAATATCGAAAGCGGTCTATTGGCACAAAAACACGAAGCCAGAGGGTTGATGCTCTTCTTCATCATATGTTGAGTGCTGAATTGTGTCAAAATGAGTCTTCCAGTACACAAACTTCATAA
>Glyma12g33165.1 sequence type=predicted peptide gene model=Glyma12g33165 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKQSLLLRGESSDQSYQSRGIFRRSDAIAYGSNYEKAAAFIDLAEDGVGLPEEILDSPNFQNYIRFYFIFTKCNLIWSLSYFALIVLNFLEKPLWCKKLTTNSCNDREYFFLGQLPYLTDAECLIYEGITLVLLIIHTFFPLSYEGSRIYWKNTINQLKVFSLLVLVADVMLYALFLSPLAFDFLPFRIAPYIRVVLFVLNIRELRETIIILVGMLDTYLNVLALWLLFLLFASWVAYVFFEDTIQGKTVFTSYGTTLYQLFLLFTTSNNPDVWVPAYKSSRWYCLFFILFVLVGVYFVTNLILAVVYDSFKSELVKQVFEKDCLRRNVLDKAFDLLDTHKVSSLNKNQCIRLFEELNKYRTLPKISREDFELIFDELDDSHDIKINKDEFADICNAIALKFQKEDVMSYFEYLSFYHSPSSKRLKEFVRSPMFGYLVSFVLVLNLVAVIIETTLDIENNSAQKVWQMVEFVFGWVYVIEMVLKIYAYGFENYWRDGQNRFDFIVTVTIAIGETVTFAVPDDDLPFISNGEWIRYLLLARMLRLIRILMYVKRYRAFVATLLTLIPSLMPYLGIIFCTLCIYCSIGVQIFGGIVNAGNPELELTALAENDYLVFNFNDYPNGIVTLFNFLVTATWDEVMTSYKELTGTSWTYLYFISFYLITVLLLLNLIIAFVLEAFFAEMELESSETCEGNDKEVEGDKYRKRSIGTKTRSQRVDALLHHMLSAELCQNESSSTQTS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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