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Report for Sequence Feature Glyma12g33070

Feature Type:gene_model
Chromosome:Gm12
Start:36434625
stop:36438609
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma12g33070
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G28250AT Annotation by Michelle Graham. TAIR10: expansin B3 | chr4:14000446-14001945 REVERSE LENGTH=264 SoyBaseE_val: 4.00E-134ISS
GO:0006949GO-bp Annotation by Michelle Graham. GO Biological Process: syncytium formation SoyBaseN/AISS
GO:0009664GO-bp Annotation by Michelle Graham. GO Biological Process: plant-type cell wall organization SoyBaseN/AISS
GO:0009826GO-bp Annotation by Michelle Graham. GO Biological Process: unidimensional cell growth SoyBaseN/AISS
GO:0009828GO-bp Annotation by Michelle Graham. GO Biological Process: plant-type cell wall loosening SoyBaseN/AISS
GO:0010583GO-bp Annotation by Michelle Graham. GO Biological Process: response to cyclopentenone SoyBaseN/AISS
GO:0019953GO-bp Annotation by Michelle Graham. GO Biological Process: sexual reproduction SoyBaseN/AISS
GO:0005576GO-cc Annotation by Michelle Graham. GO Cellular Compartment: extracellular region SoyBaseN/AISS
GO:0009506GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma SoyBaseN/AISS
PF01357PFAM Pollen allergen JGI ISS
PF03330PFAM Rare lipoprotein A (RlpA)-like double-psi beta-barrel JGI ISS
UniRef100_H9TN50UniRef Annotation by Michelle Graham. Most informative UniRef hit: Expansin B protein n=1 Tax=Glycine max RepID=H9TN50_SOYBN SoyBaseE_val: 0ISS
UniRef100_H9TN50UniRef Annotation by Michelle Graham. Best UniRef hit: Expansin B protein n=1 Tax=Glycine max RepID=H9TN50_SOYBN SoyBaseE_val: 0ISS

Proteins Associated with Glyma12g33070
LocusGene SymbolProtein Name
EXPB8 beta-expansin gene 8

Expression Patterns of Glyma12g33070
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma12g33070 not represented in the dataset
Glyma12g33070 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma12g33070
ParalogEvidenceComments
Glyma13g37395 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma12g33070 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.12g203600 Wm82.a2.v1IGC As supplied by JGI

References for Glyma12g33070
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma12g33070
>Glyma12g33070.1   sequence type=CDS   gene model=Glyma12g33070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAGTGCCACCGCGTCTCCGCCGTGCTTTTTCTAAGCTTATGCTTTAGAATTGCGCTAGTATACGCGCAAGGAGAGCCTCATCTCACTGCTCTGGACCAACATTGGTTCCCGGGAACCGCCACGTGGTACGGCGACCCCGAAGGTGACGGTAGCACCGGAGGGGCATGTGGGTATGGTACGTTGGTGGACGTGAAGCCGTTGAAGGCAAGGGTGGGAGCAGTGGGGTCAGTGCTGTTTAAGAAGGGGGAAGGGTGTGGTGCTTGCTACAAGGTGAAGTGTTTGGACCATAGCATATGTTCGAAGCGGGCAGTGACGGTTATAATAACGGATGAGTGCCCGGGCTGCCCGTCTGACCGGACGCACTTCGACCTCAGTGGCTCTGCCTTTGGCCGCATGGCAGTTGTGGGTGAAAACGGTCAGCTCAGGAACCGAGGTGAAATCCCAGTCATTTACCGCAGAACACCGTGCAAGTATGCTGGCAAAAACATTGCCTTCCATGTCAATGAAGGCTCCACTCCTTTTTGGCTATCCCTTCTGGTGGAGTTTGAAGATGGAGATGGGGACATTGGCTCCATGCATATACAAGAAGCAGGGTCGAGTGAGTGGCAGCAGATGAATCATGTATGGGGTGCAAATTGGTGCATTGTTAAGGGGCCATTAAGAGGACCTTTCTCTGTTAAACTAAGCACATCTACAGGGAAAAGCCTCACTGCCAAAGATGTTATTCCAAGCAATTGGACTCCAAAAGCCACTTATACCTCTCGCTTAAATTTCCTTTCTTAG
Predicted protein sequences of Glyma12g33070
>Glyma12g33070.1   sequence type=predicted peptide   gene model=Glyma12g33070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQCHRVSAVLFLSLCFRIALVYAQGEPHLTALDQHWFPGTATWYGDPEGDGSTGGACGYGTLVDVKPLKARVGAVGSVLFKKGEGCGACYKVKCLDHSICSKRAVTVIITDECPGCPSDRTHFDLSGSAFGRMAVVGENGQLRNRGEIPVIYRRTPCKYAGKNIAFHVNEGSTPFWLSLLVEFEDGDGDIGSMHIQEAGSSEWQQMNHVWGANWCIVKGPLRGPFSVKLSTSTGKSLTAKDVIPSNWTPKATYTSRLNFLS*






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