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Report for Sequence Feature Glyma12g32410

Feature Type:gene_model
Chromosome:Gm12
Start:35900392
stop:35904564
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma12g32410
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G54510AT Annotation by Michelle Graham. TAIR10: Auxin-responsive GH3 family protein | chr5:22131321-22133564 REVERSE LENGTH=612 SoyBaseE_val: 0ISS
GO:0009733GO-bp Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus SoyBaseN/AISS
GO:0009734GO-bp Annotation by Michelle Graham. GO Biological Process: auxin mediated signaling pathway SoyBaseN/AISS
GO:0009826GO-bp Annotation by Michelle Graham. GO Biological Process: unidimensional cell growth SoyBaseN/AISS
GO:0010252GO-bp Annotation by Michelle Graham. GO Biological Process: auxin homeostasis SoyBaseN/AISS
GO:0010583GO-bp Annotation by Michelle Graham. GO Biological Process: response to cyclopentenone SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0010279GO-mf Annotation by Michelle Graham. GO Molecular Function: indole-3-acetic acid amido synthetase activity SoyBaseN/AISS
PF03321PFAM GH3 auxin-responsive promoter JGI ISS
UniRef100_B9T670UniRef Annotation by Michelle Graham. Most informative UniRef hit: Indole-3-acetic acid-amido synthetase GH3.6, putative n=1 Tax=Ricinus communis RepID=B9T670_RICCO SoyBaseE_val: 0ISS
UniRef100_I1LU98UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LU98_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma12g32410
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma12g32410
ParalogEvidenceComments
Glyma13g38000 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma12g32410 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.12g197800 Wm82.a2.v1IGC As supplied by JGI

References for Glyma12g32410
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma12g32410
>Glyma12g32410.1   sequence type=CDS   gene model=Glyma12g32410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTTGGTTCCACACTCCGAAACTCAATAGCTATTAATTCTCTAGCCATGCCTAAAGCTACAAAGCACTTATGCCACGATCCAAAGGATAATCTTGATGATGATGATGATGGTAGTAACACTAGTAACAACAATAAGAGCGCACTCGAATACATTGAAGAGGTCACAAGCAACGCTGATGTAATTCAAGAAAAGGTTCTTGCCCAGATCCTTTCTCGTAGTGCACACGCTGAATACCTCCAACGCCATGGCCTAGATGGGCGCACTGACAGAAACACTTTCAAGAAGATCATGCCCGTGGTCACTTACGAGGATTTGAAGCCATATATTGATCGTATAGCCAACGGTGATACCTCTCCAATTTTATGTTCCAAACCCATATCAGAGTTCCTCACCAGCTCTGGGACTTCTGGTGGGGAGAGAAAATTGATGCCAACCATAGAAGAGGAGCTAGAGAGGAGATCAATGCTTTATAGCCTCTTGATGCCGGTGATGGATCAGTTTGTGCCCGCTTTGGACAAAGGCAAAGGCATGTACTTTTTGTTCACAAAATCAGAAGCCAAGACCCCAGGTGGACTCCTTGCTCGTCCAGTTTTGACCAGCTATTACAAAAGCTCCCATTTCAAGCACCGCAAACACGATCCCTACACAAACTACACAAGCCCCAATGAAACCATTCTCTGCCCTGACTCTTACCAAAGCATGTACTCTCAGTTGCTTTGCGGCCTTTGCCAAAACGAGGAAGTTCTTCGAGTTGGGGCAGTCTTCGCATCAGGTTTCATTCGTGCCCTTAAGTTCCTCGAAAAGCACTTCGTGTCTTTGTGCAATGACATAAGAAAGGGTACCTTAGACGCCAAAATCAACGACCCTTTAGTGAGAGAGGCCGTTATGAAAGTACTTAAACCAAATCCCACGCTTGCGGATTTCGTAGAAGCTGAGTGCATGAAAGGGTCGTGGAAGGGAATTGTTACGAGGATATGGCCTAACACTAAGTATGTTGATGTTATTGTCACGGGAACTATGTCTCAGTACATTCCCATTTTGGATTATTATAGCAATGGTCTCCCTCTTGTGTGCACCATGTATGCTTCTTCTGAGTGCTATTTTGGTCTCAATTTGAACCCCTTGTGTGACCCAAGTGAGGTAGCTTACACCCTCATTCCCACCATGGCATACTTTGAGTTCTTGCCCCTCGATGAGATCAACGGACATACTAATTCAGTTTCTCACCTAGTGCAAGAACAATTGTTGGATCTTGCAGATGTGAAGCTGGGTCAAGAGTATGAGCTTGTGGTCACCACTTATGCAGCCGGATTCAAGAACAAGGCTCCACAATTCAACTTCGTGTGTCGAAAAAACGTTGTTCTGAGCATTGACTCCGACAAAACCGACGAAGTTGAGCTACAAAATGCTGTGAAGAGTGGAGCCGACCATCTTGCTCAATTTGGTGCATCTCTAACAGAATACACAAGCTGTGTGGACACATCAACCATCCCTGGCCACTACGTTCTTTACTGGGAAATTAGCACCAATGGCCATACCCCAACAATTCCTTCTTCCGTTTTTGGTCATTGTTGCCTTGCAATTGAGGAATCACTAAACAGCGTGTATCGCCAAGGCAGAGTATCAGAGTCTATTGGACCCTTGGAAATTAAGATAGTTGAGAATGGCACATTTGACAAGCTCATGGACTTTGCTCTTAGCCAGGGTGCGTCCATTAACCAATACAAGACTCCTCGATGTGTGACATATGCGCCCATTCTGGACCTTCTAAACTCCAACGTTGTGTCCAGTTACTTTAGCCCAAAATGCCCTAATTGGGTTCCTGGTCACAAGGACTGGTGCTCTCTTCATTGA
Predicted protein sequences of Glyma12g32410
>Glyma12g32410.1   sequence type=predicted peptide   gene model=Glyma12g32410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFGSTLRNSIAINSLAMPKATKHLCHDPKDNLDDDDDGSNTSNNNKSALEYIEEVTSNADVIQEKVLAQILSRSAHAEYLQRHGLDGRTDRNTFKKIMPVVTYEDLKPYIDRIANGDTSPILCSKPISEFLTSSGTSGGERKLMPTIEEELERRSMLYSLLMPVMDQFVPALDKGKGMYFLFTKSEAKTPGGLLARPVLTSYYKSSHFKHRKHDPYTNYTSPNETILCPDSYQSMYSQLLCGLCQNEEVLRVGAVFASGFIRALKFLEKHFVSLCNDIRKGTLDAKINDPLVREAVMKVLKPNPTLADFVEAECMKGSWKGIVTRIWPNTKYVDVIVTGTMSQYIPILDYYSNGLPLVCTMYASSECYFGLNLNPLCDPSEVAYTLIPTMAYFEFLPLDEINGHTNSVSHLVQEQLLDLADVKLGQEYELVVTTYAAGFKNKAPQFNFVCRKNVVLSIDSDKTDEVELQNAVKSGADHLAQFGASLTEYTSCVDTSTIPGHYVLYWEISTNGHTPTIPSSVFGHCCLAIEESLNSVYRQGRVSESIGPLEIKIVENGTFDKLMDFALSQGASINQYKTPRCVTYAPILDLLNSNVVSSYFSPKCPNWVPGHKDWCSLH*






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