Glyma12g32280 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma12g32280

Feature Type:	gene_model
Chromosome:	Gm12
Start:	35785463
stop:	35788003
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma12g32280

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G54680	AT	Annotation by Michelle Graham. TAIR10: basic helix-loop-helix (bHLH) DNA-binding superfamily protein \| chr5:22217270-22218993 FORWARD LENGTH=234	SoyBase	E_val: 1.00E-35	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
PTHR23042	Panther	CIRCADIAN PROTEIN CLOCK/ARNT/BMAL/PAS	JGI		ISS
PTHR23042:SF22	Panther	BASIC HELIX-LOOP-HELIX (BHLH) FAMILY PROTEIN	JGI		ISS
PF00010	PFAM	Helix-loop-helix DNA-binding domain	JGI		ISS
UniRef100_G7IKM3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Transcription factor ILR3 n=1 Tax=Medicago truncatula RepID=G7IKM3_MEDTR	SoyBase	E_val: 2.00E-65	ISS
UniRef100_I1M411	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M411_SOYBN	SoyBase	E_val: 3.00E-114	ISS

Expression Patterns of Glyma12g32280

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma12g32280

Paralog	Evidence	Comments
Glyma13g38140	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma12g32280 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.12g196700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma12g32280

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma12g32280

Limit To All Plant Sequences

>Glyma12g32280.2   sequence type=transcript   gene model=Glyma12g32280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACATGAATTCCTCAGGTGGTGCCTGCGGTTGGCTTTATGATTATGGCTTTGATATCCCTGTTGCTGGTTCTGACTTCATGGCTTCAGACTCTGGTGGTTTCAGTTGGGGGCCCCAGAGTTACAACTTCAAGGGTCCTTCAAATATGAGCTTGGAAATGGAATACTCACTGGATTCAACTGTCATGGAAAATGGTCCTTCAAAGCGGTTAAGGACTGAATCATGTGCATCTGGCTCCAAGGCATGTCGTGAGAAATTGCGAAGGGATAAACTTAATGAGAGGCATGCTATTATTTTGCATATTGGTGAGAAGAATGAGCTTCGTGATGAGAAGAATAGGCTGAAGGAAGAGAAAGAAAAGTTGGAGAAGCAAGTGAAACTGACAAATATACAACCCAGCTTCCTACCTCAAGCCCCAGATGCTAAAGGGCAAGTTGGTAGCCACAAGCTGATACCTTTCATTGGATACCCTGGAATTGCCATGTGGCAGTTTATGTCCCCTGCTGCAGTTGATACTTCAAAGGATCATCTGCTTCGACCTCCAGTTGCATAA

>Glyma12g32280.3   sequence type=transcript   gene model=Glyma12g32280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCAGCTTTGCCTGTGAAACGTTCCCAACTCAAAGGCATAAACCAAGGAGAGAGATGACGTTTACTTGGCTCCTCTGCACTGTAACAACGTAATGCCAATTTGGCCATGGTGTGCACTGTTCTAGCGTGACGCACAATCTGCTGCTTGCGTCACACCCTCATAATCACAATGACTTTCTCTTTACTCCCACAACCAAAGAAAGATTAGTAACAAGTAAAATAAACAAAAGCCAAAGGAACAAATGAATAATGTTTTATGTTACATTACATAGTATTATAATATTCTCACGCTATTCACTACTCTCCATTTGGCCTCAGTTGATCATACACACTCTTCTTCTTCTTCTTCTTCTCTCTTCTTGCTTGCAATATGGACATGAATTCCTCAGGTGGTGCCTGCGGTTGGCTTTATGATTATGGCTTTGATATCCCTGTTGCTGGTTCTGACTTCATGGCTTCAGACTCTGGTGGTTTCAGTTGGGGGCCCCAGAGTTACAACTTCAAGGGTCCTTCAAATATGAGCTTGGAAATGGAATACTCACTGGATTCAACTGTCATGGAAAATGGTCCTTCAAAGCGGTTAAGGACTGAATCATGTGCATCTGGCTCCAAGGCATGTCGTGAGAAATTGCGAAGGGATAAACTTAATGAGAGGCATGCTATTATTTTGCATATTGTGTGATTGAATTTAGTCTTCTAAATCTCATGTCTTCAATTTGGCATGATTTTAAGGTTTCTGGAATTGAGTTCGATCTTGGAGCCTGGTAGACAGCCCAAAACAGACAAAGTTGCATTATTAAGCGATGCAGCTCGAGTGGTAATCCAATTGAGAAATGAAGCCGAGAGGCTGAAGGAAATGAATGATGAATTACAGGCGGGGAGTTAAAGAATTGAAGGGTGAGAAGAATGAGCTTCGTGATGAGAAGAATAGGCTGAAGGAAGAGAAAGAAAAGTTGGAGAAGCAAGTGAAACTGACAAATATACAACCCAGCTTCCTACCTCAAGCCCCAGATGCTAAAGGGCAAGTTGGTAGCCACAAGCTGATACCTTTCATTGGATACCCTGGAATTGCCATGTGGCAGTTTATGTCCCCTGCTGCAGTTGATACTTCAAAGGATCATCTGCTTCGACCTCCAGTTGCATAAAGTGGTTAGCAATAGCATCCACTTCTTTGTTGTATGTGTTCTTTACATGTGTTATATTTTTGTGTTTAAGTTATCCATCCTGTCTAATGTGTGTTTTCTAAAGTCACTGGTAGAAAGTGTGCTCGGAAACTGGTTAATAGTATAAGTTTGTGCTGTTGCTGTCTGAACTATGATAAGAAAGTGCTACATGTCATGGCTACAAAGTGTGTTGCATTATTAAAAATAAAAGTGAGTTTAAGTGGTTCTTTGCTGTAATGTTTTCTTTTTTTTTTTTGGCC

Coding sequences of Glyma12g32280

Limit To All Plant Sequences

>Glyma12g32280.1   sequence type=CDS   gene model=Glyma12g32280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACATGAATTCCTCAGGTGGTGCCTGCGGTTGGCTTTATGATTATGGCTTTGATATCCCTGTTGCTGGTTCTGACTTCATGGCTTCAGACTCTGGTGGTTTCAGTTGGGGGCCCCAGAGTTACAACTTCAAGGGTCCTTCAAATATGAGCTTGGAAATGGAATACTCACTGGATTCAACTGTCATGGAAAATGGTCCTTCAAAGCGGTTAAGGACTGAATCATGTGCATCTGGCTCCAAGGCATGTCGTGAGAAATTGCGAAGGGATAAACTTAATGAGAGGTTTCTGGAATTGAGTTCGATCTTGGAGCCTGGTAGACAGCCCAAAACAGACAAAGTTGCATTATTAAGCGATGCAGCTCGAGTGGTAATCCAATTGAGAAATGAAGCCGAGAGGCTGAAGGAAATGAATGATGAATTACAGGCGGGGAGTTAA

>Glyma12g32280.2   sequence type=CDS   gene model=Glyma12g32280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACATGAATTCCTCAGGTGGTGCCTGCGGTTGGCTTTATGATTATGGCTTTGATATCCCTGTTGCTGGTTCTGACTTCATGGCTTCAGACTCTGGTGGTTTCAGTTGGGGGCCCCAGAGTTACAACTTCAAGGGTCCTTCAAATATGAGCTTGGAAATGGAATACTCACTGGATTCAACTGTCATGGAAAATGGTCCTTCAAAGCGGTTAAGGACTGAATCATGTGCATCTGGCTCCAAGGCATGTCGTGAGAAATTGCGAAGGGATAAACTTAATGAGAGGCATGCTATTATTTTGCATATTGGTGAGAAGAATGAGCTTCGTGATGAGAAGAATAGGCTGAAGGAAGAGAAAGAAAAGTTGGAGAAGCAAGTGAAACTGACAAATATACAACCCAGCTTCCTACCTCAAGCCCCAGATGCTAAAGGGCAAGTTGGTAGCCACAAGCTGATACCTTTCATTGGATACCCTGGAATTGCCATGTGGCAGTTTATGTCCCCTGCTGCAGTTGATACTTCAAAGGATCATCTGCTTCGACCTCCAGTTGCATAA

>Glyma12g32280.3   sequence type=CDS   gene model=Glyma12g32280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACATGAATTCCTCAGGTGGTGCCTGCGGTTGGCTTTATGATTATGGCTTTGATATCCCTGTTGCTGGTTCTGACTTCATGGCTTCAGACTCTGGTGGTTTCAGTTGGGGGCCCCAGAGTTACAACTTCAAGGGTCCTTCAAATATGAGCTTGGAAATGGAATACTCACTGGATTCAACTGTCATGGAAAATGGTCCTTCAAAGCGGTTAAGGACTGAATCATGTGCATCTGGCTCCAAGGCATGTCGTGAGAAATTGCGAAGGGATAAACTTAATGAGAGGCATGCTATTATTTTGCATATTGTGTGA

Predicted protein sequences of Glyma12g32280

Limit To All Plant Sequences

>Glyma12g32280.1   sequence type=predicted peptide   gene model=Glyma12g32280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDMNSSGGACGWLYDYGFDIPVAGSDFMASDSGGFSWGPQSYNFKGPSNMSLEMEYSLDSTVMENGPSKRLRTESCASGSKACREKLRRDKLNERFLELSSILEPGRQPKTDKVALLSDAARVVIQLRNEAERLKEMNDELQAGS*

>Glyma12g32280.2   sequence type=predicted peptide   gene model=Glyma12g32280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDMNSSGGACGWLYDYGFDIPVAGSDFMASDSGGFSWGPQSYNFKGPSNMSLEMEYSLDSTVMENGPSKRLRTESCASGSKACREKLRRDKLNERHAIILHIGEKNELRDEKNRLKEEKEKLEKQVKLTNIQPSFLPQAPDAKGQVGSHKLIPFIGYPGIAMWQFMSPAAVDTSKDHLLRPPVA*

>Glyma12g32280.3   sequence type=predicted peptide   gene model=Glyma12g32280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDMNSSGGACGWLYDYGFDIPVAGSDFMASDSGGFSWGPQSYNFKGPSNMSLEMEYSLDSTVMENGPSKRLRTESCASGSKACREKLRRDKLNERHAIILHIV*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain