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Report for Sequence Feature Glyma12g32060

Feature Type:gene_model
Chromosome:Gm12
Start:35664936
stop:35667330
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma12g32060
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G20570AT Annotation by Michelle Graham. TAIR10: RING-box 1 | chr5:6956905-6958221 REVERSE LENGTH=118 SoyBaseE_val: 8.00E-73ISS
GO:0006511GO-bp Annotation by Michelle Graham. GO Biological Process: ubiquitin-dependent protein catabolic process SoyBaseN/AISS
GO:0009733GO-bp Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus SoyBaseN/AISS
GO:0009853GO-bp Annotation by Michelle Graham. GO Biological Process: photorespiration SoyBaseN/AISS
GO:0016567GO-bp Annotation by Michelle Graham. GO Biological Process: protein ubiquitination SoyBaseN/AISS
GO:0016925GO-bp Annotation by Michelle Graham. GO Biological Process: protein sumoylation SoyBaseN/AISS
GO:0042023GO-bp Annotation by Michelle Graham. GO Biological Process: DNA endoreduplication SoyBaseN/AISS
GO:0042752GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of circadian rhythm SoyBaseN/AISS
GO:0043161GO-bp Annotation by Michelle Graham. GO Biological Process: proteasomal ubiquitin-dependent protein catabolic process SoyBaseN/AISS
GO:0043248GO-bp Annotation by Michelle Graham. GO Biological Process: proteasome assembly SoyBaseN/AISS
GO:0051510GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of unidimensional cell growth SoyBaseN/AISS
GO:0051788GO-bp Annotation by Michelle Graham. GO Biological Process: response to misfolded protein SoyBaseN/AISS
GO:0080129GO-bp Annotation by Michelle Graham. GO Biological Process: proteasome core complex assembly SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0019005GO-cc Annotation by Michelle Graham. GO Cellular Compartment: SCF ubiquitin ligase complex SoyBaseN/AISS
GO:0031463GO-cc Annotation by Michelle Graham. GO Cellular Compartment: Cul3-RING ubiquitin ligase complex SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
GO:0008270GO-mf Annotation by Michelle Graham. GO Molecular Function: zinc ion binding SoyBaseN/AISS
KOG2930 KOG SCF ubiquitin ligase, Rbx1 component JGI ISS
PTHR11210Panther RING FINGER JGI ISS
UniRef100_G7IKI7UniRef Annotation by Michelle Graham. Most informative UniRef hit: RING-box protein n=1 Tax=Medicago truncatula RepID=G7IKI7_MEDTR SoyBaseE_val: 6.00E-73ISS
UniRef100_I1LU61UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LU61_SOYBN SoyBaseE_val: 4.00E-82ISS

Expression Patterns of Glyma12g32060
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma12g32060 not represented in the dataset
Glyma12g32060 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma12g32060
ParalogEvidenceComments
Glyma13g38420 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma12g32060 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.12g194500 Wm82.a2.v1IGC As supplied by JGI

References for Glyma12g32060
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma12g32060
>Glyma12g32060.2   sequence type=transcript   gene model=Glyma12g32060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTAGAATTTAGCATTTAGAATTTTTTTCCCAAGGCTGAAAAACTCTGACCGAGTCCGAGAGGCATCATGGCGACACTGGATTCCGACGTGACCGTGTTTCCGGCCGGCGAAGCCTCCAGCAGCGCCGGTCCTTCTTCGTCCACCAAGAAGCCGAAGCGTTTCGAGATCAAGAAGTGGAATGCGGTTTCCCTCTGGGCTTGGGATATTGTCGTGGATAATTGCGCTATTTGTCGGAACCATATCATGGATCTCTGTATTGAGTGCCAGGCCAACCAGGCTAGCGCCACTAGCGAGGAATGCACTGTAGCTTGGGGTACGCTCTGAAGCCCTTTAATATTCTCCTGTTAAATGCGTCATTTTGTTCATTCCTGTTTTTTTTATCTACTTGTTTTCCCCTGAATTAGTTGGGGATTTTGTTTTAAATTTTGTTGCAGAAAAAATTTCAGTGAATTACTGACGTTTTGTATTCGTTTATTGGTGATGGAAGTTGTTGATAGGATTTTTTAAGTGAGGGGGTATTTGAGTCACGATGATTGATTGTCTGAAAACAATAAACCTAATAAAAAACATGTTTTGATC

>Glyma12g32060.3   sequence type=transcript   gene model=Glyma12g32060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTAGAATTTAGCATTTAGAATTTTTTTCCCAAGGCTGAAAAACTCTGACCGAGTCCGAGAGGCATCATGGCGACACTGGATTCCGACGTGACCGTGTTTCCGGCCGGCGAAGCCTCCAGCAGCGCCGGTCCTTCTTCGTCCACCAAGAAGCCGAAGCGTTTCGAGATCAAGAAGTGGAATGCGGTTTCCCTCTGGGCTTGGGATATTGTCGTGGATAATTGCGCTATTTGTCGGAACCATATCATGGATCTCTGTATTGAGTGCCAGGCCAACCAGGCTAGCGCCACTAGCGAGGAATGCACTGTAGCTTGGGCCGATGGCTCAAGACCCGTCAAGTATGTCCTCTAGATAATAGCGAGTGGGAATTTCAGAAATACGGTCACTAGAACTTTGATGCGGCTGAGCTACTTCCAACTTGGACATTTGGATTGTAGCATTTCTATCAAATTTATAGCTCTACATTACTGCTGATAAAAAAAAAAATAGCTCTACATTACTTGTTGTCTTTTGCTTGCCTATTGGAATTTTATTCAGAAGAGTCGCTTCTAAATGCTTTCGATCCAACATCATTATTTCTAACTGTGGGAAATACGGTGGTGTTAATTCACTCAATGACAAAAGATTTATGGAATATTATAGCATGCAAATATTCACGAATAGCATACAAACAGTTCTGTCTTCCTAATACATGTTTTTAACAATCCTAATGAATCATAAAAAGTATTGAATGTGTTTTAATTGCCAA
Coding sequences of Glyma12g32060
>Glyma12g32060.1   sequence type=CDS   gene model=Glyma12g32060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGACACTGGATTCCGACGTGACCGTGTTTCCGGCCGGCGAAGCCTCCAGCAGCGCCGGTCCTTCTTCGTCCACCAAGAAGCCGAAGCGTTTCGAGATCAAGAAGTGGAATGCGGTTTCCCTCTGGGCTTGGGATATTGTCGTGGATAATTGCGCTATTTGTCGGAACCATATCATGGATCTCTGTATTGAGTGCCAGGCCAACCAGGCTAGCGCCACTAGCGAGGAATGCACTGTAGCTTGGGGAGTTTGTAACCATGCTTTTCACTTCCATTGCATAAGCCGATGGCTCAAGACCCGTCAAGTATGTCCTCTAGATAATAGCGAGTGGGAATTTCAGAAATACGGTCACTAG

>Glyma12g32060.2   sequence type=CDS   gene model=Glyma12g32060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGACACTGGATTCCGACGTGACCGTGTTTCCGGCCGGCGAAGCCTCCAGCAGCGCCGGTCCTTCTTCGTCCACCAAGAAGCCGAAGCGTTTCGAGATCAAGAAGTGGAATGCGGTTTCCCTCTGGGCTTGGGATATTGTCGTGGATAATTGCGCTATTTGTCGGAACCATATCATGGATCTCTGTATTGAGTGCCAGGCCAACCAGGCTAGCGCCACTAGCGAGGAATGCACTGTAGCTTGGGGTACGCTCTGA

>Glyma12g32060.3   sequence type=CDS   gene model=Glyma12g32060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGACACTGGATTCCGACGTGACCGTGTTTCCGGCCGGCGAAGCCTCCAGCAGCGCCGGTCCTTCTTCGTCCACCAAGAAGCCGAAGCGTTTCGAGATCAAGAAGTGGAATGCGGTTTCCCTCTGGGCTTGGGATATTGTCGTGGATAATTGCGCTATTTGTCGGAACCATATCATGGATCTCTGTATTGAGTGCCAGGCCAACCAGGCTAGCGCCACTAGCGAGGAATGCACTGTAGCTTGGGCCGATGGCTCAAGACCCGTCAAGTATGTCCTCTAG
Predicted protein sequences of Glyma12g32060
>Glyma12g32060.1   sequence type=predicted peptide   gene model=Glyma12g32060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATLDSDVTVFPAGEASSSAGPSSSTKKPKRFEIKKWNAVSLWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH*

>Glyma12g32060.2   sequence type=predicted peptide   gene model=Glyma12g32060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATLDSDVTVFPAGEASSSAGPSSSTKKPKRFEIKKWNAVSLWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGTL*

>Glyma12g32060.3   sequence type=predicted peptide   gene model=Glyma12g32060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATLDSDVTVFPAGEASSSAGPSSSTKKPKRFEIKKWNAVSLWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWADGSRPVKYVL*






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