SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G15440 | AT | Annotation by Michelle Graham. TAIR10: hydroperoxide lyase 1 | chr4:8835869-8838462 FORWARD LENGTH=384 | SoyBase | E_val: 3.00E-176 | ISS |
| GO:0006569 | GO-bp | Annotation by Michelle Graham. GO Biological Process: tryptophan catabolic process | SoyBase | N/A | ISS |
| GO:0006631 | GO-bp | Annotation by Michelle Graham. GO Biological Process: fatty acid metabolic process | SoyBase | N/A | ISS |
| GO:0009611 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to wounding | SoyBase | N/A | ISS |
| GO:0009684 | GO-bp | Annotation by Michelle Graham. GO Biological Process: indoleacetic acid biosynthetic process | SoyBase | N/A | ISS |
| GO:0055114 | GO-bp | Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process | SoyBase | N/A | ISS |
| GO:0009941 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope | SoyBase | N/A | ISS |
| GO:0004497 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: monooxygenase activity | SoyBase | N/A | ISS |
| GO:0005506 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: iron ion binding | SoyBase | N/A | ISS |
| GO:0009055 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: electron carrier activity | SoyBase | N/A | ISS |
| GO:0016705 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | SoyBase | N/A | ISS |
| GO:0020037 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: heme binding | SoyBase | N/A | ISS |
| KOG0157 | KOG | Cytochrome P450 CYP4/CYP19/CYP26 subfamilies | JGI | ISS | |
| PTHR24292 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PF00067 | PFAM | Cytochrome P450 | JGI | ISS | |
| UniRef100_E9RHS5 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: 13-hydroperoxide lyase n=1 Tax=Lotus japonicus RepID=E9RHS5_LOTJA | SoyBase | E_val: 0 | ISS |
| UniRef100_I1LU31 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LU31_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma12g31770 not represented in the dataset |
Glyma12g31770 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.12g191400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma12g31770.1 sequence type=CDS gene model=Glyma12g31770 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCATTGCCACCGCCGTCGCTGGTAACGGCGGCGACTCCGACGGAGCTTCCGATCCGGCAGATTCCGGGAAGCTACGGGTTCCCGTTGCTGGGCCCCATCTCGGATCGGCTTGACTACTTCTGGTTCCAGAAGCCAGAGAGCTTCTTCAGAAAGCGAGTGGAGAAATACAAGAGCACCGTGTTCCGCACCAATGTTCCTCCCTCCTTCCCCTTCTTCGTTAACGTTAATCCCAACGTAATCGCGGTTCTCGACGTGAAATCATTCTCCCACCTCTTCGACATGGACCTCGTCGACAAGAAGGATGTTCTCGTCGGAGACTTTGTCCCCAGCGTCGCCTTCACCGGAAACATGAGAGTCGGCGTTTACCAGGACACTACCGAACCTCAACATTCCAAGGTGAAGAACTACATCATGGATATTCTGAAAAGAAGCTCAGGCATATGGGTATCAGAACTAGAATCAAACCTAGACACACTGTGGGACAACATCGAAGCATCACTCTCGAAATCCTCATCAGTTTCGTACCTTTTCCCGTTACAACAGTTTCTCTTCACGTTCCTCTGCAAAGTCCTTGCCGGTGCAGACCCTGCACGTGACCCTAAAATCGCAGAGTCAGGCTATTCCATGCTTAATAGTTGGCTCGCTCTTCAGCTGCTCCCCACAGTCAGCGTGGGCATCCTTCAACCCCTGGAAGAAATCTTCCTCCACTCCTTTGCCTACCCTTTCTTCCTCGTCGGTGGAAACTACAACAACCTCTACAACTTCATCAAGCAACAAGGCAAGGACACTATAAACCGGGGCGCAATCGGGTTCGGGTTAACCGAAGAAGAAGCCATCCACAATTTGCTCTTCGTGCTGGGCTTCAACTCCTACGGCGGATTCTCCATTTTTCTCCCCTCTCTGATCGATGCCATAGCCAGCAACTCCGCATTGCAGGAGAAGCTTAAAAAAGAAGCGAGAGAAAAGGGCGGGTCAACGCTGACCTTCGACTCGGTCAAAGAGATGGACCTGATCCAATCCGTGGTCTACGAAACGCTGCGCATGAACCCTCCGGTTCCACTCCAGTACGGTCGAGCCCGAAAGGACTTCCGGTTGAGTTCGCACGACTCGGTCTTCCACGTCAAGAAGGGCGAGTTGCTGTGCGGCTTTCAGAAGCTCGTCATGAGGGACTCCGTTATATTCGACGAACCGGACCGGTTCAAGCCGGACCGGTTCACCCAAGAGAAAGGGGCCCAGTTGTTGAACTACTTGTATTGGTCCAATGGGCCTCAGACCGGGTCGCCCAGTGTGTCCAATAAACAGTGCGCGGGTAAGGACGTTGTCACACTCACCGCGGCTTTGATTGTGGCGTACCTTTTTCGCAGGTATGATTCCATCCAAGGGGATGGCAGTTCCATCACTGCCCTTCAAAAGACCAAGTGA
>Glyma12g31770.1 sequence type=predicted peptide gene model=Glyma12g31770 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSLPPPSLVTAATPTELPIRQIPGSYGFPLLGPISDRLDYFWFQKPESFFRKRVEKYKSTVFRTNVPPSFPFFVNVNPNVIAVLDVKSFSHLFDMDLVDKKDVLVGDFVPSVAFTGNMRVGVYQDTTEPQHSKVKNYIMDILKRSSGIWVSELESNLDTLWDNIEASLSKSSSVSYLFPLQQFLFTFLCKVLAGADPARDPKIAESGYSMLNSWLALQLLPTVSVGILQPLEEIFLHSFAYPFFLVGGNYNNLYNFIKQQGKDTINRGAIGFGLTEEEAIHNLLFVLGFNSYGGFSIFLPSLIDAIASNSALQEKLKKEAREKGGSTLTFDSVKEMDLIQSVVYETLRMNPPVPLQYGRARKDFRLSSHDSVFHVKKGELLCGFQKLVMRDSVIFDEPDRFKPDRFTQEKGAQLLNYLYWSNGPQTGSPSVSNKQCAGKDVVTLTAALIVAYLFRRYDSIQGDGSSITALQKTK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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