Glyma12g31691 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma12g31691

Feature Type:	gene_model
Chromosome:	Gm12
Start:	35259862
stop:	35263770
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma12g31691

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G06390	AT	Annotation by Michelle Graham. TAIR10: FASCICLIN-like arabinogalactan protein 17 precursor \| chr5:1952939-1955047 FORWARD LENGTH=458	SoyBase	E_val: 0	ISS
GO:0007155	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell adhesion	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0005773	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuole	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG1437	KOG	Fasciclin and related adhesion glycoproteins	JGI		ISS
PTHR10900	Panther	TRANSFORMING GROWTH FACTOR	JGI		ISS
PTHR10900:SF38	Panther	FLA (FASCICLIN-LIKE ARABINOGALACTAN PROTEIN)	JGI		ISS
PF02469	PFAM	Fasciclin domain	JGI		ISS
UniRef100_G7IRI1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Fasciclin-like arabinogalactan protein n=1 Tax=Medicago truncatula RepID=G7IRI1_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI0001BA82B7	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0001BA82B7 related cluster n=1 Tax=unknown RepID=UPI0001BA82B7	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma12g31691

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma12g31691 not represented in the dataset	Glyma12g31691 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma12g31691

Paralog	Evidence	Comments
Glyma13g38730	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma12g31691 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.12g190700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma12g31691

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma12g31691

Limit To All Plant Sequences

>Glyma12g31691.1   sequence type=CDS   gene model=Glyma12g31691   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATCGCCGCATCTACGGCGTCTCCGGCCACCGCATCTTCCTCTCCCTTCTCTTCCTTGTCTCTGTTTTCCCACAAGCGTTAACGCTGTCGCCGTCACCGACGGCTCAGATTAACTCAAACTCAATCCTCGTCGCTCTTCTGGACTCGCATTACACGGAACTCGCGGAGCTTGTCGAAAAAGCCATGTTGTTACAGAAACTAGAAGACACTGTCGCCACTCACAACATAACAATCTTCGCTCCGACCAACGAAGCCTTAGACCGCAACCTCGACCCCGATTTCAAGCGCTTTCTTCTCGAACCCGCCAATCTTCACTCCCTCCAGACGCTCCTCCTCTCTCACATCACCCCCGCGCAAATAGGATCCAAAACCCTAACCCGCCACGTCACCTCTCTTTCCGACCACAACCTCAAGCTCTCCGAAAATCTCACCACCGTCGACGAAGCCAAGGTTACCCACCCGGATGTGGTGACCCGACCCGACGGCGTCATCCACGGCATCGACCGCCTCCTCCTCCCCCGCTCCGTCGAGGACGACTTCAACCGCCGCCGCAGCCTCCGCTCCATCACCGCCGTCAAACCCGAACCCTCGCCGGAAATCGACCCGAGAACCCACCGTCTAAAGAAACCTCCCCCGCCGGTGAAACCCGGTTCCTCCCCGGAACTTCCGATTTACGACGCGATGGCTCCGGGACCCGCCCTGGCCCCGGCGCCGGCGCCGGGGCCAGGCGGCCCGCACCACCACTTCAACGGAGAAAGACAAGTCGAGGACTTCATCCACACGCTCCTCCACTACGGCGGGTACAACGAGATGGCGGACATTCTCGTAAACCTAACGTCGTTGGCCGTTGAAATGGGTCGTTTAGTTTCGGAGGGTTACGTGCTCACCGTTTTGGCCCCAAACGACGAAGCGATGGCGAAGTTGACAACGGAGCAATTAAGCGAACCGGGGGCGCCGGAGCAGATAATGTACTATCACATAATACCGGAGTACCAGACCGAAGAGAGCATGTACAATGCGGTTAGAAGGTTCGGGAAGGTTCGCTACGATACCCTACGGTTGCCGCATAAGGTGGTGGCGCAAGAAGCTGATGGGTCCGTTAAATTCGGGCACGGGGACGGGTCGGCTTATTTGTTCGACCCGGATATTTACACCGATGGACGGATCTCGGTTCAGGGGATTGATGGGGTTTTGTTTCCGACGGTGGAGGTGGAGGGGGCGGAGCGGGTTAGACCGGTTACCCGGACCGGTCAGAACGGTGCGAAAGTTGTTGTCAAGCACAGGAGAGGAAAATTACTGGAAACAGCATGCTGGATGCTTGGAACTTTTGGACAGCATTCTAGATTCGCCTCTTGTCAATGA

Predicted protein sequences of Glyma12g31691

Limit To All Plant Sequences

>Glyma12g31691.1   sequence type=predicted peptide   gene model=Glyma12g31691   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDRRIYGVSGHRIFLSLLFLVSVFPQALTLSPSPTAQINSNSILVALLDSHYTELAELVEKAMLLQKLEDTVATHNITIFAPTNEALDRNLDPDFKRFLLEPANLHSLQTLLLSHITPAQIGSKTLTRHVTSLSDHNLKLSENLTTVDEAKVTHPDVVTRPDGVIHGIDRLLLPRSVEDDFNRRRSLRSITAVKPEPSPEIDPRTHRLKKPPPPVKPGSSPELPIYDAMAPGPALAPAPAPGPGGPHHHFNGERQVEDFIHTLLHYGGYNEMADILVNLTSLAVEMGRLVSEGYVLTVLAPNDEAMAKLTTEQLSEPGAPEQIMYYHIIPEYQTEESMYNAVRRFGKVRYDTLRLPHKVVAQEADGSVKFGHGDGSAYLFDPDIYTDGRISVQGIDGVLFPTVEVEGAERVRPVTRTGQNGAKVVVKHRRGKLLETACWMLGTFGQHSRFASCQ*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain