SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G08470 | AT | Annotation by Michelle Graham. TAIR10: strictosidine synthase-like 3 | chr1:2682262-2683977 REVERSE LENGTH=390 | SoyBase | E_val: 7.00E-166 | ISS |
| GO:0009058 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biosynthetic process | SoyBase | N/A | ISS |
| GO:0009821 | GO-bp | Annotation by Michelle Graham. GO Biological Process: alkaloid biosynthetic process | SoyBase | N/A | ISS |
| GO:0005774 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane | SoyBase | N/A | ISS |
| GO:0005783 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0016844 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: strictosidine synthase activity | SoyBase | N/A | ISS |
| KOG1520 | KOG | Predicted alkaloid synthase/Surface mucin Hemomucin | JGI | ISS | |
| PTHR10426 | Panther | STRICTOSIDINE SYNTHASE-RELATED | JGI | ISS | |
| PTHR10426:SF5 | Panther | MUCIN-RELATED | JGI | ISS | |
| PF03088 | PFAM | Strictosidine synthase | JGI | ISS | |
| UniRef100_G7IRH8 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Adipocyte plasma membrane-associated protein n=1 Tax=Medicago truncatula RepID=G7IRH8_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233C71A | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233C71A related cluster n=1 Tax=unknown RepID=UPI000233C71A | SoyBase | E_val: 0 | ISS |
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Glyma12g31680 not represented in the dataset |
Glyma12g31680 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma13g38740 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.12g190600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma12g31680.1 sequence type=CDS gene model=Glyma12g31680 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGACGCTGCCTCGAGGATTCTCCATTGTGTTCCTCCTTCTTGCTCTGTACTGTGCATTAGACCCCTTTGAGCCCAGCCCCATTGTGGGTTTCCCTCCCTTTGACGTGCACAAAATTGACATGCCCGCATGGTCTGAGGTTCCTACGGACCGAGACAAAGACAACTCGTTGCTGAAATCGGAGCTCTTGTTTGTGAACCAAGTGCAAGGACCAGAGAGCATTGCCTTTGATCCTCTTGGTCGTGACCCTTACACTGGTGTTGCAGATGGAAGGATTTTGTTTTGGAATGGACAGTCTTGGACTGATTTTGCATACACCTCCCCCAATAGGTCAGAACAATATAATCCTAAGGCATCTGCATCTCCAATGAGTTATGTCAAAACTGAGCACATCTGTGGAAGGCCTTTGGGACTCAGATTTGACAAGAAAAGTGGTGATTTATACATTGCAGATGCATATTTTGGGTTGATGAAGGTGGGGCCTCAGGGTGGTTTAGCAACATCTCTTGCAACTGAGGCTGAAGGGGTGCCGCTGAGATTTACTATTGATGTAGACATTGATACAGAGGGGAACCTTTATTTTACAGATAGCAGCACAAACTTTCAGAGGAGCAATTTCATTCAGCTGGTACTATCTGGTGAGGCTAAAACCACTGTTCTCATGAGGAACGTTCAATTTCCAAACGGCATCTCCTTAAGCAAGGATGGTACCTTCTTTGTCTTTTCTAAAGGGATGATTGGAAGGTTACGTAAGTACTGGCTAAAAGGAGATAAAGCTGGAACTTCAGAGATCTTAGCAATCCTCCCTGTTTTCCTGACAACAAGGTATATGTACAGTTACCTGAATAGTCTATACCCAAAAATGAGAAAAGTCATACTCAAGCTACCTATTCCAACAAGAATTCAATACATGTTTCATATTGGAGGCAGGTTCCATGCAGTAGCTGTCAAGTATAGCCCTGAAGGTAAACTTCTGCGGATATTGGAGGACAGTGAGGGGAAAGTTGTGAGAGCTGTGAGTGCAGTGGAGGAGAAAGACGGTAAACTTTGGGTGGGAAGTGTTCTTATGCCTTTTATGGCAGTTCACAACTTGACATGA
>Glyma12g31680.1 sequence type=predicted peptide gene model=Glyma12g31680 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MTLPRGFSIVFLLLALYCALDPFEPSPIVGFPPFDVHKIDMPAWSEVPTDRDKDNSLLKSELLFVNQVQGPESIAFDPLGRDPYTGVADGRILFWNGQSWTDFAYTSPNRSEQYNPKASASPMSYVKTEHICGRPLGLRFDKKSGDLYIADAYFGLMKVGPQGGLATSLATEAEGVPLRFTIDVDIDTEGNLYFTDSSTNFQRSNFIQLVLSGEAKTTVLMRNVQFPNGISLSKDGTFFVFSKGMIGRLRKYWLKGDKAGTSEILAILPVFLTTRYMYSYLNSLYPKMRKVILKLPIPTRIQYMFHIGGRFHAVAVKYSPEGKLLRILEDSEGKVVRAVSAVEEKDGKLWVGSVLMPFMAVHNLT*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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