Glyma12g31450 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma12g31450

Feature Type:	gene_model
Chromosome:	Gm12
Start:	35011924
stop:	35013813
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma12g31450

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G08440	AT	Annotation by Michelle Graham. TAIR10: Aluminium activated malate transporter family protein \| chr1:2663027-2665343 FORWARD LENGTH=501	SoyBase	E_val: 3.00E-142	ISS
GO:0010044	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to aluminum ion	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
PF11744	PFAM	Aluminium activated malate transporter	JGI		ISS
UniRef100_B2LUQ7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Aluminum-activated malate transporter n=1 Tax=Glycine max RepID=B2LUQ7_SOYBN	SoyBase	E_val: 3.00E-150	ISS
UniRef100_UPI000233C712	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233C712 related cluster n=1 Tax=unknown RepID=UPI000233C712	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma12g31450

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma12g31450 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.12g188500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma12g31450

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma12g31450

Limit To All Plant Sequences

>Glyma12g31450.2   sequence type=CDS   gene model=Glyma12g31450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCATCCGTAAATGGAAACAATGAAGGAGGAGGTGCTGCAGGTGCCAGAGTCACCAAGTTTTTGCAATGGTTGATGGCCTTGCCTAGCGAGTTTAGTGCTAAGGTAGTGGATGTGATGTCACAAATAAAGAAAGTGGGAAAAGAAGATCCAAGAAGGGTGATTCATGCGTTGAAAGTAGCACTCTCCATCACCTTAGTTTCAGCATTTTACTATGTCAACCCTCTTTATGATGGTTTTGGCTCATCTGCAATGTATGCAGTTTTCACTGTCATTGTTGTCTCAGAGTTCTCCGTAGGAGCAACACTTGGAAAAGGTTTAAATAGAGGTTTTGCAACGTTTTTGGCTGGTGCTCTTGGGCTTGGATCTTATTACCTGGTGCATTCAATTTCAACAGAACACATAGTGGAGCCCATACTTCTAGGAACCTTAATTTATCTGATAACTGCAGGAATCACATATTTTCGATTTTTACCTCAAATAAAAGCGAGATACGATTACGGGTTGCTGGTGTTTAATTTGACATTCTGTCTGGTGTCTGTGTCAAGCTACAGAGACCACGAGGTACTAGACATTGCATTGAAAAGGGTAATCTCAATTATCTCAGGAGGTTTAATTTCTGTATCAGTCAGCATTTTCGTGTGTCCCATATGGGCCGGTGGTGATCTTCACAATCTAGAATCTAAAAATATTGAAAAACTAGGCAACTTTCTAGAAGGTTTTGGAGAGGAATATTTCGGGAGATCAGAGGGTGGAGAATCAAACAAATTATTTATGCAAGGATATAAAAGTGTTCTTACTTCAAAACAAGTTGAAGAAACTTTGGCCAATTTTGCAAGGTGGGAACCGTGCCATGGACGTTTCAGATTTCGTCATCCATGGCAACAATACTTGAAGATTGGAAACTTGTCAAGGCAGTGTGCCTATCGTATTGATGCCCTTAATGGCTTCCTTAATTCTGCCAAGACACCATTAGAAATGAGAGGCAAAATACCAGATCCATGCATCAAGATGAGCACAGAAGCAGGAAAGGCTTTAAAGGAATTAGCAATGGCAATCCATAAAATGATTCCACCATCTGCTGCAAACCCTCACATTGCCAAATCTAAGATTGCTGCCACCAACCTTAGGTCCATCATGAAAACAGGATTGTGGGAAGACACAAATCTCTTTGAGGTTATTCCTGTTCTGACTGTGGCTTCCCTATTGCTTCATGTGGTTTCTTGCACTGAGAAACTAGCAGAGTCAATACAAGAATTATCCACCCTAGCAAAATTTAAGAACCAAGACAGTGAATTTGTCCCAAAGAGTCCTCAACAGAAGGAAACTCCACAACCATGTTGTCACAACAGTGGACCACATCATGTTGTTACTATTAATTAA

Predicted protein sequences of Glyma12g31450

Limit To All Plant Sequences

>Glyma12g31450.2   sequence type=predicted peptide   gene model=Glyma12g31450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASVNGNNEGGGAAGARVTKFLQWLMALPSEFSAKVVDVMSQIKKVGKEDPRRVIHALKVALSITLVSAFYYVNPLYDGFGSSAMYAVFTVIVVSEFSVGATLGKGLNRGFATFLAGALGLGSYYLVHSISTEHIVEPILLGTLIYLITAGITYFRFLPQIKARYDYGLLVFNLTFCLVSVSSYRDHEVLDIALKRVISIISGGLISVSVSIFVCPIWAGGDLHNLESKNIEKLGNFLEGFGEEYFGRSEGGESNKLFMQGYKSVLTSKQVEETLANFARWEPCHGRFRFRHPWQQYLKIGNLSRQCAYRIDALNGFLNSAKTPLEMRGKIPDPCIKMSTEAGKALKELAMAIHKMIPPSAANPHIAKSKIAATNLRSIMKTGLWEDTNLFEVIPVLTVASLLLHVVSCTEKLAESIQELSTLAKFKNQDSEFVPKSPQQKETPQPCCHNSGPHHVVTIN*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain