Report for Sequence Feature Glyma12g31380
Feature Type: gene_model
Chromosome: Gm12
Start: 34947525
stop: 34950907
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma12g31380
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G08460 AT
Annotation by Michelle Graham. TAIR10: histone deacetylase 8 | chr1:2672527-2674469 FORWARD LENGTH=377
SoyBase E_val: 0 ISS
GO:0016575 GO-bp
Annotation by Michelle Graham. GO Biological Process: histone deacetylation
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0004407 GO-mf
Annotation by Michelle Graham. GO Molecular Function: histone deacetylase activity
SoyBase N/A ISS
KOG1344
KOG
Predicted histone deacetylase
JGI ISS
PTHR10625 Panther
HISTONE DEACETYLASE
JGI ISS
PTHR10625:SF18 Panther
HISTONE DEACETYLASE-RELATED
JGI ISS
PF00850 PFAM
Histone deacetylase domain
JGI ISS
UniRef100_I1LTZ2 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LTZ2_SOYBN
SoyBase E_val: 0 ISS
UniRef100_Q2HSH7 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Histone deacetylase n=1 Tax=Medicago truncatula RepID=Q2HSH7_MEDTR
SoyBase E_val: 0 ISS
Expression Patterns of Glyma12g31380
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Gene model name correspondences to Glyma12g31380 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.12g188200 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma12g31380
Coding sequences of Glyma12g31380
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma12g31380.1 sequence type=CDS gene model=Glyma12g31380 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCTGATGCAGGTGCAGAAGGAGCATCTTCTTCCACGGTAGGCCAAATTGACGTTTTCTGGCACGAAGGGATGCTGAAGCATGACACGGGCAATGGCGTGTTTGACACGGGGATGGATCCAGGCTTCTTAGAGGTGTTGGAGAAGCACCCTGAAAACTCAGACAGAGTGAAAAACCTAGTGTCTATTCTCAAAAGGGGTCCTATCTCCCCTTACATTTCTTGGCACCTTGGTACACCTGCAAAAATCCCTGAGCTTTTTTCTTTTCACACTCCTGAATACATAAATGAACTGGTAGAAGTTGATAAAGAAGGGGGGAAGCAGCTTTGTGGTGGGACATTTTTGAACCCTGGATCATGGGATGCTGCACTTCTTGCTGCTGGGACTACACTATCTGCGATGAAGCATTTACTGAATGGGGATGGAAAAGTTTCCTATGCATTGGTTAGGCCCCCTGGTCACCATGCTCAGCCTTCTCTGGCCGATGGCTACTGTTTCCTTAACAATGCAGGTCTAGCTGTGCAATTGGCTTTAGATTCCGGCTGCAAGAAGGTTGCGGTCATAGATATTGATGTGCATTATGGAAATGGAACGGCAGAGGGGTTTTATCGATCTAATAAGGTTCTTACCATCTCTCTTCATATGAACCATGGATCATGGGGTCCATCTCATCCGCAAAGTGGCTCTGTTGATGAGCTAGGTGAAGGAGAAGGTTATGGCTTTAACTTGAACATACCTCTACCAAATGGAACTGGGGACAAGGGATATGTACATGCCTTCAATGAGTTGGTTGTTCCATCCATCCAAAAGTTTGGGCCTGATATGATAGTTTTGGTTCTTGGACAAGACTCTAATGCATTTGATCCCAATGGAAGGCAATGCTTAACAATGGAGGGCTATAGAGAAATAGGGCGAATTGTCCATCTTCTTGCGAAAAGGCACAGTGCAGGACGCCTTCTAATTGTCCAGGAAGGTGGATATCATGTCACATATTCTGCATATTGTTTACATGCAACACTTGAGGGGATTCTCAACCTACCAATGCCTCTACTAGCGGATCCTATTGCTTTTTACCTAGACGACGAGACATTTTCTGTCCAAGTTATAGAAGCCATTAAGAATTATCAAAAAGATAAAGTGTGCTAG
Predicted protein sequences of Glyma12g31380
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma12g31380.1 sequence type=predicted peptide gene model=Glyma12g31380 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MADAGAEGASSSTVGQIDVFWHEGMLKHDTGNGVFDTGMDPGFLEVLEKHPENSDRVKNLVSILKRGPISPYISWHLGTPAKIPELFSFHTPEYINELVEVDKEGGKQLCGGTFLNPGSWDAALLAAGTTLSAMKHLLNGDGKVSYALVRPPGHHAQPSLADGYCFLNNAGLAVQLALDSGCKKVAVIDIDVHYGNGTAEGFYRSNKVLTISLHMNHGSWGPSHPQSGSVDELGEGEGYGFNLNIPLPNGTGDKGYVHAFNELVVPSIQKFGPDMIVLVLGQDSNAFDPNGRQCLTMEGYREIGRIVHLLAKRHSAGRLLIVQEGGYHVTYSAYCLHATLEGILNLPMPLLADPIAFYLDDETFSVQVIEAIKNYQKDKVC*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
