SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G44200 | AT | Annotation by Michelle Graham. TAIR10: NIMA (never in mitosis, gene A)-related 6 | chr3:15906788-15911365 FORWARD LENGTH=956 | SoyBase | E_val: 0 | ISS |
| GO:0007017 | GO-bp | Annotation by Michelle Graham. GO Biological Process: microtubule-based process | SoyBase | N/A | ISS |
| GO:0007155 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell adhesion | SoyBase | N/A | ISS |
| GO:0009913 | GO-bp | Annotation by Michelle Graham. GO Biological Process: epidermal cell differentiation | SoyBase | N/A | ISS |
| GO:0010090 | GO-bp | Annotation by Michelle Graham. GO Biological Process: trichome morphogenesis | SoyBase | N/A | ISS |
| GO:0043622 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cortical microtubule organization | SoyBase | N/A | ISS |
| GO:0045010 | GO-bp | Annotation by Michelle Graham. GO Biological Process: actin nucleation | SoyBase | N/A | ISS |
| GO:0048765 | GO-bp | Annotation by Michelle Graham. GO Biological Process: root hair cell differentiation | SoyBase | N/A | ISS |
| GO:0071555 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell wall organization | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0055028 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cortical microtubule | SoyBase | N/A | ISS |
| GO:0004672 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein kinase activity | SoyBase | N/A | ISS |
| GO:0016301 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: kinase activity | SoyBase | N/A | ISS |
| KOG0589 | KOG | Serine/threonine protein kinase | JGI | ISS | |
| PTHR24362 | Panther | SERINE/THREONINE-PROTEIN KINASE NEK | JGI | ISS | |
| PTHR24362:SF158 | Panther | JGI | ISS | ||
| PF00069 | PFAM | Protein kinase domain | JGI | ISS | |
| UniRef100_Q2HSJ8 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Protein kinase n=1 Tax=Medicago truncatula RepID=Q2HSJ8_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233D756 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233D756 related cluster n=1 Tax=unknown RepID=UPI000233D756 | SoyBase | E_val: 0 | ISS |
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Glyma12g31330 not represented in the dataset |
Glyma12g31330 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma13g38980 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.12g187700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma12g31330.2 sequence type=CDS gene model=Glyma12g31330 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGTCGCGGATGGATCACTACGAGATCATGGAGCAGATCGGTCGTGGCGCGTTTGGCGCTGCGATTCTCGTAAACCACAAAGCGGAGAAGAAGAAGTACGTGTTGAAGAAAATCAGGCTCGCGCGGCAGACTGAACGATGCAGAAGATCTGCTCATCAAGAGATGGCTCTTATTGCTCGAATTCAGCATCCCTACATTGTGCAATTTAAAGAGGCTTGGGTTGAGAAGGGTTGCTATGTTTGCATTGTTACTGGATACTGTGAAGGTGGAGACATGGCTGCATTGATGAAAAAATCAATCGGGGTTTACTTTCCTGAGGAGAAACTCTGCAAGTGGTTTACTCAAATACTTTTGGCAGTAGAATACCTGCATTCAAATTTTGTTTTACATCGTGATCTGAAGTGTTCCAACATCTTTCTAACCAAGGATCAAGATGTTCGCCTAGGGGATTTTGGGCTTGCTAAGACACTAAAAGCGGATGATTTGGCTTCTTCGGTGGTAGGAACTCCCAACTATATGTGTCCTGAACTTCTTGCAGATATTCCTTATGGATTCAAATCTGATATTTGGTCACTAGGTTGTTGTATATATGAGATGGCTGCTCATCGCCCAGCTTTTAAAGCTTTTGATATGGCAGGGTTGATAAGCAAGATAAACCGTTCCTCTATTGGCCCTTTGCCTCCCTGTTATTCCCCATCTTTGAAAACGCTGATAAAGGGCATGCTGAGAAAAAATCCTGAGCATCGTCCAACAGCATCTGAAATCTTAAAACACCCTTATTTGCTGCCTTATGTTGATCAATATCGTTCATCTTTCTGTACCCCAACAGCTGGTTCTCCTGAAAGGCCAATTTCTGCTGTCCATCATCCTCGAAAAAATAAGCCAGAAAGTCAAAACAGTAGTAGTAGTTTGAGTCCTGAGAAAGATAGTTTCATGTCGAGTGAGAAAAACACTGCAAATGAAGTAAAGAAGTGTGATAGAAAAATCACCGAAATAGACCTGACATCAATTGAGGATGACAGCTCTGAGCAACTCCTGCCCGAGGAAGAGGGAAATGGCTCCAGTAGAGTCAATGCCAAAACAGATGAGAAAGAGCTGACGAAGCAATCTAATAATGTACACCATTCTAATGCTGTATCTAAGCAACCAAAACCAATTAAGAATGTTGTGACAGCTTTAAAAGATGGAAAACTTAGAGAGACAAGTTCTCCAATAAGAGGCAATCGCATAAAGGTTGGTGGTGTATTGACCCATAAAATAAATTCAGAGACAGTGTCCAAATTGCCCAAACCCAATTTTGGTGCTTATGATTTGAAGCCTAATTTGGAGGTGCCAACTACTGCACCTTCTAAAACAACTCCTGATTCTGCAAAAAGAATGCAAGGATTGCATACTTCAAAGCATCAGTTACCAATGATAGAATCCACTCCAAAAACTAAACCTCGACATAATGCGATTCCACCATCTGGTCCAGTCAAACAAGTAGAAGGACGGGAAGTTCCTTCCAAGCCAAGGCAAAAGACTCGTCCAAGCTTACTTAAACCACCTTCTTTTCCAGGACATGTGAGGCAGGCTGGGTTTGATGTTCCAAATGCAACAAATAATACTGGAAAGTCAAGTCCAAAGAAAATGGTTTGGGAGCCTAAGATGAGCCATCATCAGCTGACCAACACTCATCTACCACATGTTTCTAGAGAGACTACTAGAGAGCCTTTGAAGACTTTTGAAACCAGTTCCAAAGGAATGCAAACAGACAGCAGCAATTCTGTCTCATCTTCACTCTCTATTCAAGGATTCGAACTTTCTGATTTTGCAACCACTTTTATTGACTTAAGTGAACCAACACTTCCTGATCATGAGAGTTTAAACCACACTGAAAACGTGGAATCATGTCCATATAGCATTTCATGTGCTTCCTATTTGCATTTTGAGATGTCTGAACAATTATCTGGGGAAACCCCTGTGGTTACACCATGTTTTCAGAATATAACTAGTAATGAGAAAGTAAGTCCCAGTTTAACTCTTGATCACTCAGGCCAAGATGCTGAGGTAATGTTTGCTTCTGATGATAGTTTTTCCATAAATCAAAGGACTGCATCTGCTGGCTCCAGGTGTGATAATTTATCTGTAGATCCCTCTGCTGAAATCACACAAGAAATCAAAGACCCTCAAGATTCAAAGGAAATGTCTTCAGCCAAATCTCTCCAACAGTCGCTCCTCATTTCTGGAGAAAAGTCTGTTTGTGAAGAATTTGGTCCTTCAAGTAAAGGAAGTAATAGGCTTGATAAAGTTAGCCGGCCAAAACTTATGTGCATCTCCACTGGTGATGACAAATTCATGGTGAGGGAAAGACTGTCATCAGTGGATGAAACTGCTCCTTCGATTATCTCTACTAAAATTTCAAGCCAGAAAGTTTTGCAAGAAGAGAAAGGAATGGTTTTACAGAATCCAGCACCAGAAAGGCCAGCTGTTGGCCATCTTCCTCCAGCTTTTGATGATGTCATTCATGTCATACGCCATAGCAGTTACCGCGTGGGGAGTGAGCAGCCAGGGAAGGAATCTGTGGAGATGGGAGTTCAAAATGTAGATGTCGGTAAGTTTATCAACATTGCAAGGGATGATTTAGAAATGAGAAATGTGAGCACCCCTTTGACCCTAAAATCTTCAAATTGCTCTGAAGCTATTGGCTTGAAGTCAAATATTTCTGATAATATGGAAATCAGAAACTTGAGTAGTCCTCCTAACTTAAAATCTTCAAGTTGCACCGACTTGATGAACATCAAATCAAGTTTTTCTGATCATCTTCTTGTTAGGAAACAAGATGTGAAAAACACTGATTCTCTTGTTTCAAAATCTGATTCCTCCGAGTATACCAAACATAACACTCCTACAGCTGCAGAGGAAACACCCCCAAAGGAAATTTTGGATGTTAAATCTTCCAGGCAGAGAGCTGAAGCACTTGAAGGTCTGTTGGAATTATCTGCAGATTTGCTGCAGCAAAATAGATTGGAGGAACTTGCAGTTGTTCTGAAGCCCTTTGGAAAAGATAAAGTCTCCCCAAGGGAGACAGCCATTTGGTTAGCCAAGAGTCTAAAAGGATTGATGATCGAGGAAAGTGGGGGACGCAGTTAA
>Glyma12g31330.2 sequence type=predicted peptide gene model=Glyma12g31330 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MESRMDHYEIMEQIGRGAFGAAILVNHKAEKKKYVLKKIRLARQTERCRRSAHQEMALIARIQHPYIVQFKEAWVEKGCYVCIVTGYCEGGDMAALMKKSIGVYFPEEKLCKWFTQILLAVEYLHSNFVLHRDLKCSNIFLTKDQDVRLGDFGLAKTLKADDLASSVVGTPNYMCPELLADIPYGFKSDIWSLGCCIYEMAAHRPAFKAFDMAGLISKINRSSIGPLPPCYSPSLKTLIKGMLRKNPEHRPTASEILKHPYLLPYVDQYRSSFCTPTAGSPERPISAVHHPRKNKPESQNSSSSLSPEKDSFMSSEKNTANEVKKCDRKITEIDLTSIEDDSSEQLLPEEEGNGSSRVNAKTDEKELTKQSNNVHHSNAVSKQPKPIKNVVTALKDGKLRETSSPIRGNRIKVGGVLTHKINSETVSKLPKPNFGAYDLKPNLEVPTTAPSKTTPDSAKRMQGLHTSKHQLPMIESTPKTKPRHNAIPPSGPVKQVEGREVPSKPRQKTRPSLLKPPSFPGHVRQAGFDVPNATNNTGKSSPKKMVWEPKMSHHQLTNTHLPHVSRETTREPLKTFETSSKGMQTDSSNSVSSSLSIQGFELSDFATTFIDLSEPTLPDHESLNHTENVESCPYSISCASYLHFEMSEQLSGETPVVTPCFQNITSNEKVSPSLTLDHSGQDAEVMFASDDSFSINQRTASAGSRCDNLSVDPSAEITQEIKDPQDSKEMSSAKSLQQSLLISGEKSVCEEFGPSSKGSNRLDKVSRPKLMCISTGDDKFMVRERLSSVDETAPSIISTKISSQKVLQEEKGMVLQNPAPERPAVGHLPPAFDDVIHVIRHSSYRVGSEQPGKESVEMGVQNVDVGKFINIARDDLEMRNVSTPLTLKSSNCSEAIGLKSNISDNMEIRNLSSPPNLKSSSCTDLMNIKSSFSDHLLVRKQDVKNTDSLVSKSDSSEYTKHNTPTAAEETPPKEILDVKSSRQRAEALEGLLELSADLLQQNRLEELAVVLKPFGKDKVSPRETAIWLAKSLKGLMIEESGGRS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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