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Report for Sequence Feature Glyma12g31280

Feature Type:gene_model
Chromosome:Gm12
Start:34850149
stop:34851234
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma12g31280
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G06270AT Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11600.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:1912895-1913263 FORWARD LENGTH=122 SoyBaseE_val: 8.00E-17ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
UniRef100_I1LTY4UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LTY4_SOYBN SoyBaseE_val: 3.00E-72ISS
UniRef100_Q9FNI1UniRef Annotation by Michelle Graham. Most informative UniRef hit: Gb|AAF02129.1 n=1 Tax=Arabidopsis thaliana RepID=Q9FNI1_ARATH SoyBaseE_val: 4.00E-14ISS

Expression Patterns of Glyma12g31280
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma12g31280
ParalogEvidenceComments
Glyma13g39050 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma12g31280 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.12g187200 Wm82.a2.v1IGC As supplied by JGI

References for Glyma12g31280
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma12g31280
>Glyma12g31280.1   sequence type=CDS   gene model=Glyma12g31280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTGCAAAAGAAAGTGTCCAGGTCGAGAATTGAAGCTGCCAAGCAGGCCCACATCGGCGGAGTTATCATCGTCGACATCATCAGGTGAGTGGCCGGAATTATCATCGTCATCGTCTGCATCTTCGGTATCATGTACATCAAAGATGCCGAAGGAGTCAGAAGAAGAGAACGAGCAACGTGAAAATTCTACTCCAGAAACAAAGGCCATGGATCTCGTTGGTTGTCCTCGATGCTTCATGTACGTCATGTTATCCGAGGTGGATCCAAAGTGCCCTAAGTGCAAGACCACAGTGTTTCTTGAACTTTTCAAAGATGAAAACTTGAAGACTAACAGTTGA
Predicted protein sequences of Glyma12g31280
>Glyma12g31280.1   sequence type=predicted peptide   gene model=Glyma12g31280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MCKRKCPGRELKLPSRPTSAELSSSTSSGEWPELSSSSSASSVSCTSKMPKESEEENEQRENSTPETKAMDLVGCPRCFMYVMLSEVDPKCPKCKTTVFLELFKDENLKTNS*






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