SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G27450 | AT | Annotation by Michelle Graham. TAIR10: nitrilase-like protein 1 | chr2:11737666-11739577 REVERSE LENGTH=299 | SoyBase | E_val: 0 | ISS |
| GO:0006596 | GO-bp | Annotation by Michelle Graham. GO Biological Process: polyamine biosynthetic process | SoyBase | N/A | ISS |
| GO:0006807 | GO-bp | Annotation by Michelle Graham. GO Biological Process: nitrogen compound metabolic process | SoyBase | N/A | ISS |
| GO:0009446 | GO-bp | Annotation by Michelle Graham. GO Biological Process: putrescine biosynthetic process | SoyBase | N/A | ISS |
| GO:0016810 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds | SoyBase | N/A | ISS |
| GO:0050126 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: N-carbamoylputrescine amidase activity | SoyBase | N/A | ISS |
| KOG0806 | KOG | Carbon-nitrogen hydrolase | JGI | ISS | |
| PTHR23088 | Panther | NITRILASE-RELATED | JGI | ISS | |
| PF00795 | PFAM | Carbon-nitrogen hydrolase | JGI | ISS | |
| UniRef100_G7ITU5 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: N-carbamoylputrescine amidase n=1 Tax=Medicago truncatula RepID=G7ITU5_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1LTW8 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LTW8_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma12g31100 not represented in the dataset |
Glyma12g31100 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma13g39210 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.12g185700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma12g31100.4 sequence type=transcript gene model=Glyma12g31100 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GAATAGAATGTCTATTTATTCTTTAATTTACACTTATGTAGGAGTCTAAAAAGTTGGCGGAATATAATTCTATTGTGTGCAGTGCAGTGTTTTCCCACGAGGCAACAAGGAAACAATAATCTCATATTCCCAAAACTTGAGCTTTATTACGTTGTTTCTGTAGATGGAGAAGGGTAGAACCGTGGTGGTGTCTGCTTTGCAGTTTGCATGCACCGATGATGTCTCAACTAATATCGCCACCGCCGAGAGGCTAATTAGAGCTGCACATAAACAGGGTGCGAACATCATTCTGATTCAGGAGCTCTTTGAAGGTTATTACTTCTGTCAGGCACAAAGAGTGGATTTCTTTCAAAGAGCTAAGCCACATAAGGACCATCCCACAATCCTCAGAATGCAGAAACTTGCAAAAGAGTTAGGTGTAGTCATACCAGTTAGCTTCTTTGAGGAGGCAAACAATGCACATTATAATTCAATAGCCATAATTGATTCTGATGGAACTGATCTTGGGATTTATAGAAAGTCCCATATTCCAGATGGACCAGGTTACGAGGAAAAGTTCTATTTTAATCCAGGTGACACTGGATTTAAGGTTTTCCAGACTAAATTTGCAAAGATTGGAGTTGCTATTTGCTGGGATCAGTGGTTTCCTGAGGCAGCCCGAGCAATGGTGCTTCAAGGTGCTGAGATTCTATTTTATCCTACTGCTATTGGGTCTGAACCTCATGATGGAAGCATTGACTCTCGTGACCACTGGAAACGAGTAATGCAAGGACATGCTGGGGCCAATTTGGTACCTCTTGTGGCTTCAAATAGGATAGGAAAGGAGATAATAGAGACTGAACATGGAAAAACTGAGATAACATTTTACGGAAACTCCTTCATAGCAGGACCTACAGGAGAAATTGTTTCAGTTGCTGATGATAAAGAGGAAGCTGTTCTTATTGCTCAGTTTGATCTGGACAAGATCAAATCAACGAGGCATTGTTGGGGGGTATTCCGTGATAGGCGTCCTGATCTATATAAGGTGCTTTTAACATTAGATGGCAACAATCCCGTCCAATGATAGATAAACATCTTACCTTGTAACTGTTATAGAATGATACCTGGAATGGTTTAATCCTTTACAAACTTCCAGAGCGTTTATCACTCACCAAATATGCAAGAACAAGGGACAACACAAAAATATCATCTGCTAATTCCATGCAATTTAATAAATATGTGGAATTAATGATCAATCGGCTAATAAATTTGATGTTTTGTAGTCCATTTTAATCATAAACAATTCATCTGAGTCATTTGACACCATGTATGAACATTATATTTCATTTTATGCAATTTGGACACGGAAGTTTTCTGAAGTGTTCTAAATTTGCTGTTAGCTTCGAGAAGTGATTTGTTCTGTGTTTATATAGATCATTCCTG
>Glyma12g31100.3 sequence type=CDS gene model=Glyma12g31100 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGAAGGGTAGAACCGTGGTGGTGTCTGCTTTGCAGTTTGCATGCACCGATGATGTCTCAACTAATATCGCCACCGCCGAGAGGCTAATTAGAGCTGCACATAAACAGGGTGCGAACATCATTCTGATTCAGGAGCTCTTTGAAGGTTATTACTTCTGTCAGGCACAAAGAGTGGATTTCTTTCAAAGAGCTAAGCCACATAAGGACCATCCCACAATCCTCAGAATGCAGAAACTTGCAAAAGAGTTAGGTGTAGTCATACCAGTTAGCTTCTTTGAGGAGGCAAACAATGCACATTATAATTCAATAGCCATAATTGATTCTGATGGAACTGATCTTGGGATTTATAGAAAGTCCCATATTCCAGATGGACCAGGTTACGAGGAAAAGTTCTATTTTAATCCAGGTGACACTGGATTTAAGGTTTTCCAGACTAAATTTGCAAAGATTGGAGTTGCTATTTGCTGGGATCAGTGGTTTCCTGAGGCAGCCCGAGCAATGGTGCTTCAAGGTGCTGAGATTCTATTTTATCCTACTGCTATTGGGTCTGAACCTCATGATGGAAGCATTGACTCTCGTGACCACTGGAAACGAGTAATGCAAGGACATGCTGGGGCCAATTTGGTACCTCTTGTGGCTTCAAATAGGATAGGAAAGGAGATAATAGAGACTGAACATGGAAAAACTGAGATAACATTTTACGGAAACTCCTTCATAGCAGGACCTACAGGAGAAATTGTTTCAGTTGCTGATGATAAAGAGGAAGCTGTTCTTATTGCTCAGTTTGATCTGGACAAGATCAAATCAACGAGGCATTGTTGGGGGGTATTCCGTGATAGGCGTCCTGATCTATATAAGGTGCTTTTAACATTAGATGGCAACAATCCCGTCCAATGA >Glyma12g31100.4 sequence type=CDS gene model=Glyma12g31100 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGAAGGGTAGAACCGTGGTGGTGTCTGCTTTGCAGTTTGCATGCACCGATGATGTCTCAACTAATATCGCCACCGCCGAGAGGCTAATTAGAGCTGCACATAAACAGGGTGCGAACATCATTCTGATTCAGGAGCTCTTTGAAGGTTATTACTTCTGTCAGGCACAAAGAGTGGATTTCTTTCAAAGAGCTAAGCCACATAAGGACCATCCCACAATCCTCAGAATGCAGAAACTTGCAAAAGAGTTAGGTGTAGTCATACCAGTTAGCTTCTTTGAGGAGGCAAACAATGCACATTATAATTCAATAGCCATAATTGATTCTGATGGAACTGATCTTGGGATTTATAGAAAGTCCCATATTCCAGATGGACCAGGTTACGAGGAAAAGTTCTATTTTAATCCAGGTGACACTGGATTTAAGGTTTTCCAGACTAAATTTGCAAAGATTGGAGTTGCTATTTGCTGGGATCAGTGGTTTCCTGAGGCAGCCCGAGCAATGGTGCTTCAAGGTGCTGAGATTCTATTTTATCCTACTGCTATTGGGTCTGAACCTCATGATGGAAGCATTGACTCTCGTGACCACTGGAAACGAGTAATGCAAGGACATGCTGGGGCCAATTTGGTACCTCTTGTGGCTTCAAATAGGATAGGAAAGGAGATAATAGAGACTGAACATGGAAAAACTGAGATAACATTTTACGGAAACTCCTTCATAGCAGGACCTACAGGAGAAATTGTTTCAGTTGCTGATGATAAAGAGGAAGCTGTTCTTATTGCTCAGTTTGATCTGGACAAGATCAAATCAACGAGGCATTGTTGGGGGGTATTCCGTGATAGGCGTCCTGATCTATATAAGGTGCTTTTAACATTAGATGGCAACAATCCCGTCCAATGA
>Glyma12g31100.3 sequence type=predicted peptide gene model=Glyma12g31100 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEKGRTVVVSALQFACTDDVSTNIATAERLIRAAHKQGANIILIQELFEGYYFCQAQRVDFFQRAKPHKDHPTILRMQKLAKELGVVIPVSFFEEANNAHYNSIAIIDSDGTDLGIYRKSHIPDGPGYEEKFYFNPGDTGFKVFQTKFAKIGVAICWDQWFPEAARAMVLQGAEILFYPTAIGSEPHDGSIDSRDHWKRVMQGHAGANLVPLVASNRIGKEIIETEHGKTEITFYGNSFIAGPTGEIVSVADDKEEAVLIAQFDLDKIKSTRHCWGVFRDRRPDLYKVLLTLDGNNPVQ* >Glyma12g31100.4 sequence type=predicted peptide gene model=Glyma12g31100 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEKGRTVVVSALQFACTDDVSTNIATAERLIRAAHKQGANIILIQELFEGYYFCQAQRVDFFQRAKPHKDHPTILRMQKLAKELGVVIPVSFFEEANNAHYNSIAIIDSDGTDLGIYRKSHIPDGPGYEEKFYFNPGDTGFKVFQTKFAKIGVAICWDQWFPEAARAMVLQGAEILFYPTAIGSEPHDGSIDSRDHWKRVMQGHAGANLVPLVASNRIGKEIIETEHGKTEITFYGNSFIAGPTGEIVSVADDKEEAVLIAQFDLDKIKSTRHCWGVFRDRRPDLYKVLLTLDGNNPVQ*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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