Glyma12g31040 - SoyBase

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Report for Sequence Feature Glyma12g31040

Feature Type:	gene_model
Chromosome:	Gm12
Start:	34656796
stop:	34659305
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma12g31040

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G08360	AT	Annotation by Michelle Graham. TAIR10: Ribosomal protein L1p/L10e family \| chr1:2636231-2637694 FORWARD LENGTH=216	SoyBase	E_val: 1.00E-126	ISS
GO:0006412	GO-bp	Annotation by Michelle Graham. GO Biological Process: translation	SoyBase	N/A	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0005840	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: ribosome	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0009506	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma	SoyBase	N/A	ISS
GO:0015934	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: large ribosomal subunit	SoyBase	N/A	ISS
GO:0022625	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosolic large ribosomal subunit	SoyBase	N/A	ISS
GO:0022626	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosolic ribosome	SoyBase	N/A	ISS
GO:0003723	GO-mf	Annotation by Michelle Graham. GO Molecular Function: RNA binding	SoyBase	N/A	ISS
GO:0003735	GO-mf	Annotation by Michelle Graham. GO Molecular Function: structural constituent of ribosome	SoyBase	N/A	ISS
KOG1570	KOG	60S ribosomal protein L10A	JGI		ISS
PTHR23105	Panther	60S RIBOSOMAL PROTEIN L10A - RELATED	JGI		ISS
PTHR23105:SF4	Panther	60S RIBOSOMAL PROTEIN L10A	JGI		ISS
PF00687	PFAM	Ribosomal protein L1p/L10e family	JGI		ISS
UniRef100_C6SVL1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Ribosomal protein n=1 Tax=Glycine max RepID=C6SVL1_SOYBN	SoyBase	E_val: 1.00E-155	ISS
UniRef100_C6SVL1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Ribosomal protein n=1 Tax=Glycine max RepID=C6SVL1_SOYBN	SoyBase	E_val: 1.00E-155	ISS

Expression Patterns of Glyma12g31040

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma12g31040 not represented in the dataset	Glyma12g31040 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma12g31040

Paralog	Evidence	Comments
Glyma13g39270	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma12g31040 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.12g184900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma12g31040

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma12g31040

Limit To All Plant Sequences

>Glyma12g31040.2   sequence type=transcript   gene model=Glyma12g31040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTAGCTAGGGTTTCAGTGGTACTTTCTCTAATCCGAAGATATTGCTATTTGATTTTCCTACATTTTCTTCTGCTTACTTCACTGATTCCAATTCTTACTTTCTTCTTCTCTGCGATTTTGTTCGCAGGTGTTAGATCTGTACCTGCCTAGCCATTGATTTGGAAAAGTCCAAGCTTCAAAGATGAGTAAGCTTCAGAGTGATGCTCTTAGAGAAGCTATCTCAGGAATCATGACTGATTCCAAGGAAAAGAACAGGAAATTTGTGGAGACCATTGAACTCCAAATTGGGCTGAAAAACTATGATCCCCAGAAGGACAAGCGTTTTAGTGGCTCTGTTAAGTTGCCTCACATTCCTCGCCCCAAGATGAAGATTTGTATGCTTGGAGATGCCCAACACGTTGAAGAGGCTGAGAAGATAGGATTGGACTACATGGATGTCGAGGCCTTGAAGAAGCTTAACAAAAACAAGAAATTGGTGAAAAAACTAGCCAAAAAATATCATGCCTTTTTGGCCTCTGAAGCAGTCATCAAGCAGATTCCTCGTCTCTTGGGACCTGGTCTCAACAAGGCAGGGAAGTTCCCTACGCTTGTGACTCACCAAGAATCTCTCGAGTCAAAGGTTAATGAGACCAAGGCCATGGTGAAGTTCCAGCTTAAGAAGGTGCTTTGCATGGGAGTAGCCGTGGGGAATGTTAGCATGGAGGAAAAGCAAATCTTCCAAAATGTACAACTGAGTGTTAACTTCCTTGTCTCTTTGTTGAAAAAGAATTGGCAGAACGTTCGCTGCCTGTATCTGAAGAGTACCATGGGGAAATCGTACCGTGTCTTTTGAGTTGTTCTTAAATTCAGTGAATTTCTGATCGCACCTAATATATTGTCTTTCGATAGGTTTGACAGAATTTTTCATCGTTCTACAGTTTTGTTGGATGAGTATTTTTTGGGTAGTATTTGTTTGTTATTTGGCATTTATGTTTCAAGTGCTTTTCGACATCGGATAATTTTAGCGTGTTAAGTTTAAGCTTCTCGTGTTTTTACTTACACAACTCCTTGCGCTAAGCCCCTTTGATGCAAATATCTTGTGATTACATCTATCCGGCAACAATTTGATTAGGCATTGAGTCAGCCGTTAGATCCAAATTGTTTTAAAGTTAGAATTAAGTTAAAACCTTTAAATGTAATTAGGATATAAATTTGGATGAATCTTAAATATGGATTTAACTCAGAATATGGTGTAGTAGGTGAACGTTTTGACGCTGACAAGCGTTAGTTGTGAAGTTTTGTTTCAAGTACAGAGTGACCGTGATGCAAGCTTGGTCAATCATTGCAGCTGTTTATTCTTATATGATTGGTTGATGTGTTTCCACAGAT

Coding sequences of Glyma12g31040

Limit To All Plant Sequences

>Glyma12g31040.1   sequence type=CDS   gene model=Glyma12g31040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTAAGCTTCAGAGTGATGCTCTTAGAGAAGCTATCTCAGGAATCATGACTGATTCCAAGGAAAAGAACAGGAAATTTGTGGAGACCATTGAACTCCAAATTGGGCTGAAAAACTATGATCCCCAGAAGGACAAGCGTTTTAGTGGCTCTGTTAAGTTGCCTCACATTCCTCGCCCCAAGATGAAGATTTGTATGCTTGGAGATGCCCAACACGTTGAAGAGGCTGAGAAGATAGGATTGGACTACATGGATGTCGAGGCCTTGAAGAAGCTTAACAAAAACAAGAAATTGGTGAAAAAACTAGCCAAAAAATATCATGCCTTTTTGGCCTCTGAAGCAGTCATCAAGCAGATTCCTCGTCTCTTGGGACCTGGTCTCAACAAGGCAGGGAAGTTCCCTACGCTTGTGACTCACCAAGAATCTCTCGAGTCAAAGGTTAATGAGACCAAGGCCATGGTGAAGTTCCAGCTTAAGAAGGTGCTTTGCATGGGAGTAGCCGTGGGGAATGTTAGCATGGAGGAAAAGCAAATCTTCCAAAATGTACAACTGAGTGTTAACTTCCTTGTCTCTTTGTTGAAAAAGAATTGGCAGAACGTTCGCTGCCTGTATCTGAAGAGTACCATGGGGAAATCGTACCGTGTCTTTTGA

>Glyma12g31040.2   sequence type=CDS   gene model=Glyma12g31040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTAAGCTTCAGAGTGATGCTCTTAGAGAAGCTATCTCAGGAATCATGACTGATTCCAAGGAAAAGAACAGGAAATTTGTGGAGACCATTGAACTCCAAATTGGGCTGAAAAACTATGATCCCCAGAAGGACAAGCGTTTTAGTGGCTCTGTTAAGTTGCCTCACATTCCTCGCCCCAAGATGAAGATTTGTATGCTTGGAGATGCCCAACACGTTGAAGAGGCTGAGAAGATAGGATTGGACTACATGGATGTCGAGGCCTTGAAGAAGCTTAACAAAAACAAGAAATTGGTGAAAAAACTAGCCAAAAAATATCATGCCTTTTTGGCCTCTGAAGCAGTCATCAAGCAGATTCCTCGTCTCTTGGGACCTGGTCTCAACAAGGCAGGGAAGTTCCCTACGCTTGTGACTCACCAAGAATCTCTCGAGTCAAAGGTTAATGAGACCAAGGCCATGGTGAAGTTCCAGCTTAAGAAGGTGCTTTGCATGGGAGTAGCCGTGGGGAATGTTAGCATGGAGGAAAAGCAAATCTTCCAAAATGTACAACTGAGTGTTAACTTCCTTGTCTCTTTGTTGAAAAAGAATTGGCAGAACGTTCGCTGCCTGTATCTGAAGAGTACCATGGGGAAATCGTACCGTGTCTTTTGA

Predicted protein sequences of Glyma12g31040

Limit To All Plant Sequences

>Glyma12g31040.1   sequence type=predicted peptide   gene model=Glyma12g31040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSKLQSDALREAISGIMTDSKEKNRKFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKICMLGDAQHVEEAEKIGLDYMDVEALKKLNKNKKLVKKLAKKYHAFLASEAVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGNVSMEEKQIFQNVQLSVNFLVSLLKKNWQNVRCLYLKSTMGKSYRVF*

>Glyma12g31040.2   sequence type=predicted peptide   gene model=Glyma12g31040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSKLQSDALREAISGIMTDSKEKNRKFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKICMLGDAQHVEEAEKIGLDYMDVEALKKLNKNKKLVKKLAKKYHAFLASEAVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGNVSMEEKQIFQNVQLSVNFLVSLLKKNWQNVRCLYLKSTMGKSYRVF*

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