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Report for Sequence Feature Glyma12g30975

Feature Type:gene_model
Chromosome:Gm12
Start:34597605
stop:34604672
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma12g30975
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G44510AT Annotation by Michelle Graham. TAIR10: alpha/beta-Hydrolases superfamily protein | chr3:16108251-16111139 REVERSE LENGTH=325 SoyBaseE_val: 2.00E-111ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0016036GO-bp Annotation by Michelle Graham. GO Biological Process: cellular response to phosphate starvation SoyBaseN/AISS
GO:0019375GO-bp Annotation by Michelle Graham. GO Biological Process: galactolipid biosynthetic process SoyBaseN/AISS
GO:0045892GO-bp Annotation by Michelle Graham. GO Biological Process: negative regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PTHR10992Panther ALPHA/BETA HYDROLASE RELATED JGI ISS
PTHR10992:SF198Panther ESTERASE/LIPASE/THIOESTERASE FAMILY PROTEIN JGI ISS
PF00170PFAM bZIP transcription factor JGI ISS
UniRef100_B9SCS4UniRef Annotation by Michelle Graham. Most informative UniRef hit: Catalytic, putative n=1 Tax=Ricinus communis RepID=B9SCS4_RICCO SoyBaseE_val: 1.00E-130ISS
UniRef100_UPI000233C704UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233C704 related cluster n=1 Tax=unknown RepID=UPI000233C704 SoyBaseE_val: 0ISS

Expression Patterns of Glyma12g30975
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma12g30975 not represented in the dataset
Glyma12g30975 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma12g30975
ParalogEvidenceComments
Glyma13g39340 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma12g30975 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.12g184400 Wm82.a2.v1IGC As supplied by JGI

References for Glyma12g30975
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma12g30975
>Glyma12g30975.1   sequence type=CDS   gene model=Glyma12g30975   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAAAGAGTAAAACATCATCTTAAATTGTTGACACAAATCCCCCTGGTTCAGACACAGAATATCTGCAGATGTTTCTGTCAAGGCACTCAACTATCTCCAAACCACAACGGTTCATCAGATGATTTTCCCGTGGTTTCACCAAGAATCAAACTCAGAGATGGGAGGCACCTTGCCTATATTGAGAGAGGCGTCCCCAAAGACATAGCAAAGTACAAGATCGTCATTGTGCACGGCTTTGGAAGCTCCAAAGAGATGAATTTTCTGGCACCCCAAGAATTAATAGATGAGTTGGGTATATATCTTCTGCAATATGACCGGGCTGGATATGGAGAAAGTGATCCAAACCCCAAACGCTCACTGAAAAGTGAAGCACTTGACATTCAAGAGCTTGCTGATCAGCTACAATTAGGACCACAGTTTTATGTGATTGGAGTCTCAATGGGTTCATACGCTACTTGGAGTTGTCTAAAGTATTTGCCCCACAGGCTTGCAGGGTTGGCACTGATAGCACCAGTGATCAATTACAGGTGGCCTTCATTCCCTAAGAGACTGATAAGGGAGGACTACAGGAGGAAACTTGTCCAGTGGTGTATGTGGCTTGCAAACCACTGGCCTAGACTATTGCATTGGTGGGTCACTCAAAAGTGGCTCCCTTCAACTGCTGTCATAGAGAAGAACCCTGCATTTTTCAACAAAAGTGATGTGGATATTCTAAAGACAATTCCTGGGTTCCCTATGCTTACAAAGGACAGTTTAAGGGAAAAGGCTGTTTTTGACACTCTTCGCCATGACTGGAGGGTGGCTTTTGGAAAATGGGAATTTGACCCAATGAAGCTAAGTAATCCATTCCCTCACAATACAGAATTCAGATTCTCCCTTCTGTTTTTGTTCAGGTTGTTCCAAGAATTAGCACCTTTATCGACACACATGTCTCTCCAACAACCAAATCAAGAGGTGCCATTGCAAGAACCAGAAGCCACATTTTCTCAACTAAGCAAACAAAACTCAATACTCTCACTCACCCTTGATGAGTTCTATTGCAAGAATGGAAAGAGCTTAGGATCCATGAACATGGATGAATTCCTTTCTAGCATTTGGAACTCTGATGACAACAACCAAGTTAACCCATCACTACCCACCCTTGATGAAGCTGCAAAGGGTAAAAGTGTAGTAGCAACAGAACCCACCACCATTTCCCAGCCATTATCTGTCCCTCCCCCAATTTGCAAGAAAACTGTGGATGAAATTTGGTCTCAGATCCACAAAAGCCAACCACACTACAATGAAGCTAACAATAGCCTTGCCAGGAATGAGCCACTACTCAAAAGGCAGCAAACACTTGGGGAAATGACTTTGGAGGATTTCCTAGTAAAAGCTGGGGTGGTACAAGAATCATCATCACTATTCAAGTCTTCATTACTATATCAAAATCAGATTGGTAACATTGCAAGTAATGGGCCATTGAGTGCAAGTTATAGGTTCAGGCATGTAATAGGGACAGGATCTAGTGTGTCTTGTAATGGGCTTGAAACACAAAACATGTTGGCACAGAATAACAACTTAGTTATAAAGGATGTCACTACAAATGGTGCTGTGGAGAAATGTCCAAGCTTAGGAGAATCAAGTGGGAAGGGTAATAGGAAGAGGATCATTGATGGCCCTCCTGAAGTGGTAGTAGAGAGAAGGCAGCGCAGAATGTTGAAGAATCGAGAATCGGCGGCACGTTCTCGAGCAAGAAGACAGGCATATACGGTAGAGCTTGAAGCAGAGCTGAATCTGCTAAAAGAAGAGAACGAAAAGCTCAAACAAACTCTGGCCGATGCTGAACGCAAGAGAAAACAAGAGATTTCTCAGAGAAAGCACACAACAATGGCTCAAAAGAGGACAGAAAAATTGAGGTCAATGAAGAGGCCTCTAAGCGCATCCTGGTGA
Predicted protein sequences of Glyma12g30975
>Glyma12g30975.1   sequence type=predicted peptide   gene model=Glyma12g30975   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKRVKHHLKLLTQIPLVQTQNICRCFCQGTQLSPNHNGSSDDFPVVSPRIKLRDGRHLAYIERGVPKDIAKYKIVIVHGFGSSKEMNFLAPQELIDELGIYLLQYDRAGYGESDPNPKRSLKSEALDIQELADQLQLGPQFYVIGVSMGSYATWSCLKYLPHRLAGLALIAPVINYRWPSFPKRLIREDYRRKLVQWCMWLANHWPRLLHWWVTQKWLPSTAVIEKNPAFFNKSDVDILKTIPGFPMLTKDSLREKAVFDTLRHDWRVAFGKWEFDPMKLSNPFPHNTEFRFSLLFLFRLFQELAPLSTHMSLQQPNQEVPLQEPEATFSQLSKQNSILSLTLDEFYCKNGKSLGSMNMDEFLSSIWNSDDNNQVNPSLPTLDEAAKGKSVVATEPTTISQPLSVPPPICKKTVDEIWSQIHKSQPHYNEANNSLARNEPLLKRQQTLGEMTLEDFLVKAGVVQESSSLFKSSLLYQNQIGNIASNGPLSASYRFRHVIGTGSSVSCNGLETQNMLAQNNNLVIKDVTTNGAVEKCPSLGESSGKGNRKRIIDGPPEVVVERRQRRMLKNRESAARSRARRQAYTVELEAELNLLKEENEKLKQTLADAERKRKQEISQRKHTTMAQKRTEKLRSMKRPLSASW*






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