SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G44590 | AT | Annotation by Michelle Graham. TAIR10: 60S acidic ribosomal protein family | chr3:16163983-16164658 FORWARD LENGTH=111 | SoyBase | E_val: 6.00E-28 | ISS |
| GO:0001510 | GO-bp | Annotation by Michelle Graham. GO Biological Process: RNA methylation | SoyBase | N/A | ISS |
| GO:0006414 | GO-bp | Annotation by Michelle Graham. GO Biological Process: translational elongation | SoyBase | N/A | ISS |
| GO:0005622 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: intracellular | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0005840 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: ribosome | SoyBase | N/A | ISS |
| GO:0022626 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosolic ribosome | SoyBase | N/A | ISS |
| GO:0003735 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: structural constituent of ribosome | SoyBase | N/A | ISS |
| KOG3449 | KOG | 60S acidic ribosomal protein P2 | JGI | ISS | |
| PTHR21141 | Panther | 60S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER | JGI | ISS | |
| PF00428 | PFAM | 60s Acidic ribosomal protein | JGI | ISS | |
| UniRef100_A8X663 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Protein CBG08266 n=1 Tax=Caenorhabditis briggsae RepID=A8X663_CAEBR | SoyBase | E_val: 5.00E-32 | ISS |
| UniRef100_I1LTT1 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1LTT1_SOYBN | SoyBase | E_val: 3.00E-68 | ISS |
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Glyma12g30800 not represented in the dataset |
Glyma12g30800 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma13g39490 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.12g182800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma12g30800.3 sequence type=CDS gene model=Glyma12g30800 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAGGTCGTCGCTGCATACTTGCTCGCAGTGTTGGGAGGGAATCCTTCCCCTTCTGCCGATGACATCAAACACATCCTCGGCGCAGTTGGAGCTGAGGCTGAGAATGAGTTGATTGAGTTGCTCTTGACTGAAGTCAAGGGAAAAGACTTCAATGAGCTAATTGCTAGTGGAAGTGAAAAGATGTCTGCAGTGTCTGGTGGCGGTGCAGCGGTTGCCGTTGCTGCTGCACCAGCTGGAGGTGCTGCTGCACCTGCTGCCGAAGCAAAGGAAGAAAAGAAAGTAGAAGAGAAGGAGGAGTCTGATGATGATATGGGTTTCAGTTTGTTCGACTAA
>Glyma12g30800.3 sequence type=predicted peptide gene model=Glyma12g30800 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKVVAAYLLAVLGGNPSPSADDIKHILGAVGAEAENELIELLLTEVKGKDFNELIASGSEKMSAVSGGGAAVAVAAAPAGGAAAPAAEAKEEKKVEEKEESDDDMGFSLFD*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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