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Report for Sequence Feature Glyma12g30510

Feature Type:gene_model
Chromosome:Gm12
Start:34125287
stop:34129252
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma12g30510
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G22790AT Annotation by Michelle Graham. TAIR10: reticulata-related 1 | chr5:7599395-7601573 REVERSE LENGTH=433 SoyBaseE_val: 2.00E-171ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0009536GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plastid SoyBaseN/AISS
GO:0009706GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast inner membrane SoyBaseN/AISS
GO:0009941GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PF11891PFAM Domain of unknown function (DUF3411) JGI ISS
UniRef100_I1MS74UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MS74_SOYBN SoyBaseE_val: 0ISS
UniRef100_Q9FGP9UniRef Annotation by Michelle Graham. Most informative UniRef hit: AT5g22790/K8E10_2 n=1 Tax=Arabidopsis thaliana RepID=Q9FGP9_ARATH SoyBaseE_val: 9.00E-169ISS

Expression Patterns of Glyma12g30510
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma12g30510
ParalogEvidenceComments
Glyma17g05420 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma12g30510 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.12g180500 Wm82.a2.v1IGC As supplied by JGI

References for Glyma12g30510
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma12g30510
>Glyma12g30510.2   sequence type=CDS   gene model=Glyma12g30510   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCAGCCTTCACTATTTCCAACAACGCCGCCGCCGCCACCGCCACGTGGCCACTCCCCCAATTCAACACTTGCCACTTTCCGCACTCTCCATCCATTGTTCTTCATCATTCCCTCCTCAACATCCGCGCTTTCAGGATCCACTGTGTCCCTCAAGAACCTCTCCCCCCATTACAACAACAACCCAAACACGATCAACTTTCTCCCGGAGGCGACGGAGGCCACGGTGACGCCGGCGGTGGCGGAGGCGGAGGCGGAGATGGAGGTGAAGGAGGAGGAGACGAAGAGTTCGGACCCTTGTTGAAGTTCGAAGCGGTTATGAGAGAATCTGAAGCTCGTGGTGTTAAGTTGCCTCCGGATATGGTAGAGGCAGCGAGGATCACCGGCATCCGGGAAATGTTTCTTCTTCGTTACTTGGAGTTGCAGGGTTCGTCTTGGCCACTGTCTTTTCTGATGCAGCATTGTGCTATGCTGAGAAATCGAATGCTAGCTGACCCTTCTTTTCTTTTCAAAGTTGGAACCGAGATTGTTATAGACTCTTGTTGTGCAACCTTTGCGGAGGTGCAGAAGAGAGGCAAGGATTTCTGGGCTGAATTTGAATTGTACGCTGCTGATCTTCTTGTTGGAGTGGTTGTTGACATTGCTTTGGTGGGTCTGTTGGCACCATATGCTCGAATTGGCAAGCCTTCTCTGTCAAAAGGTTTGCTTGGACAAATTCAGCATGCTTGTGCTGCTCTTCCTAGCAGTGTGTTTGAAGCTGAAAGGCCGGGATGTAAATTCTCCACGATGCAGCGCATTGCCACATACTTCTACAAGGGTGCATTGTATGGATCAGTTGGCTTTGGATGTGGTATTATTGGTCAAGGAATTGCAAATATGATCATGAATGCCAAAAGGAGCATTAAGAAATCTGAAGATGACATACCTGTGCCTCCTCTTCTGAAAAGTGCTGCTCTTTGGGGATTCTTTCTTGCTGTGTCATCCAACACACGTTATCAAATTATCAATGGTCTAGAAAACATTGTTGAAGCATCTCCCGTGGCAAAGAGGGTCCCACTTGTTGCAATGGCATTCACTGTGGGTGTGCGATTTGGAAACAACATCTATGGTGGCATGCAGTTCGTAGACTGGGCCAAATGGAGTGGCGTACAATGA
Predicted protein sequences of Glyma12g30510
>Glyma12g30510.2   sequence type=predicted peptide   gene model=Glyma12g30510   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSAFTISNNAAAATATWPLPQFNTCHFPHSPSIVLHHSLLNIRAFRIHCVPQEPLPPLQQQPKHDQLSPGGDGGHGDAGGGGGGGGDGGEGGGDEEFGPLLKFEAVMRESEARGVKLPPDMVEAARITGIREMFLLRYLELQGSSWPLSFLMQHCAMLRNRMLADPSFLFKVGTEIVIDSCCATFAEVQKRGKDFWAEFELYAADLLVGVVVDIALVGLLAPYARIGKPSLSKGLLGQIQHACAALPSSVFEAERPGCKFSTMQRIATYFYKGALYGSVGFGCGIIGQGIANMIMNAKRSIKKSEDDIPVPPLLKSAALWGFFLAVSSNTRYQIINGLENIVEASPVAKRVPLVAMAFTVGVRFGNNIYGGMQFVDWAKWSGVQ*






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