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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G08200 | AT | Annotation by Michelle Graham. TAIR10: UDP-D-apiose/UDP-D-xylose synthase 2 | chr1:2574259-2576609 REVERSE LENGTH=389 | SoyBase | E_val: 0 | ISS |
| GO:0009226 | GO-bp | Annotation by Michelle Graham. GO Biological Process: nucleotide-sugar biosynthetic process | SoyBase | N/A | ISS |
| GO:0044237 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular metabolic process | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0048046 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: apoplast | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0048040 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: UDP-glucuronate decarboxylase activity | SoyBase | N/A | ISS |
| GO:0050662 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: coenzyme binding | SoyBase | N/A | ISS |
| KOG1371 | KOG | UDP-glucose 4-epimerase/UDP-sulfoquinovose synthase | JGI | ISS | |
| KOG1429 | KOG | dTDP-glucose 4-6-dehydratase/UDP-glucuronic acid decarboxylase | JGI | ISS | |
| PTHR10366 | Panther | NAD DEPENDENT EPIMERASE/DEHYDRATASE | JGI | ISS | |
| PTHR10366:SF147 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF01370 | PFAM | NAD dependent epimerase/dehydratase family | JGI | ISS | |
| UniRef100_D2D333 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: UDP-D-apiose/UPD-D-xylose synthetase n=1 Tax=Gossypium hirsutum RepID=D2D333_GOSHI | SoyBase | E_val: 0 | ISS |
| UniRef100_I1LTQ1 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LTQ1_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma12g30490 not represented in the dataset |
Glyma12g30490 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma17g05440 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.12g180300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma12g30490.2 sequence type=transcript gene model=Glyma12g30490 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AATTTATCATCAAACGTCATGGAAAAATAAAAAAGAAAGAAAGAAAACTTGTGGGAGACAACTAGACGAGACCATTTTAACAGGCAATGAATTCTGAATCACAGCACCATAAAATCTTTCGATTCCAGAAGACACAAAGTTATTTAAATCCTAAACTAAAACCAAATACTTTGCGTGCAAAACCATCACATCATCGGCAACAGTGACAGTAACGGTGGAAGAGAGAAAGGATTCGCTCTCCTCAATCCTTATATAAGCTCCAGCGACCCAATTTCTTCTCTTATCGATTTGATTGTTTCTGAGTAATGGCTTCGTCGCGAGTAGATCTGGATGGGAACCCCATAAAGCCCATCACCATTTGCATGATTGGCGCCGGTGGCTTCATTGGGTCCCACCTCTGCGAGAAGCTCATGTCGGAGACCCCTCACAGTGTCCTCGCCTTGGATGTCTACAATGACAAGATCAAACACCTCTTGGAACCCCACACGCTCCCTTGGGCCTCTCGCATCCAGTTCCATCGCCTCAACATCAAGCACGATTCCCGTCTCGAAGGCCTCATCAAAATGTCAGATCTGACTATTAATCTGGCTGCCATTTGCACTCCCGCGGATTACAACACGCGCCCTCTTGACACAATTTACAGCAACTTCATCGACGCGCTTCCTGTGGTGAAGTACTGTTCAGAGAACAACAAGCGTCTCATTCATTTCTCTACGTGTGAAGTCTATGGGAAAACGATTGGAAGCTTCCTCCCCAAAGATAGTCCTCTTCGTCAGGATCCTGCATACTACGTACTTAAGGAGGATGAGTCTCCTTGTATTTTTGGTTCAATTGAAAAGCAGAGATGGTCCTATGCCTGTGCTAAGCAGTTGATTGAGAGGCTTGTTTATGCTGAGGGTGCTGAAAATGGCTTGGAATTCACAATTGTGAGGCCTTTTAATTGGATTGGACCACGAATGGATTTCATTCCCGGCATTGATGGCCCAAGTGAGGGTGTTCCTCGGGTTCTGGCATGCTTTAGCAATAATCTCCTCCGTGGAGAGCCCCTCAAGCTTGTGGATGGTGGCCAATCCCAGAGGACTTTTGTGTATATTAAGGATGCTATTGAAGCTGTCTTATTGATGATTGTAGGTTCCCATATCCAATCTTTTTATGCAACTTTATATATTTTAAGTTCTGATTGTAGAATTTCATCTTTAAACTATTATTCTTGTTGGATGGTTCAACTAAATGTGAACGATAATTTTTAACAGGAAAATCCCGCCAGGGCTAATGGACATATTTTTAATGTGGGAAACCCAAACAATGAGGTTACAGTTAGGCAGCTTGCTGAAATGATGACTCAGGTTAGAGGATTAAGTTTGATTGTTTGTACCTATTAGAATTTCAACATGGTATTTGGGACCATTCAACATTTATTTTCGTTCAATTCTGCAGGTTTATTCAAAGGTAAGTGGAGAAGCACCTCTGGAAAAACCTACTATTGATGTGAGCTCCAAAGAATTTTATGGTGAGGGATATGATGATAGTGACAAGAGAATTCCTGACATGACCATAATTAATAGGCAGCTTGGTATGTTTCCTTGTTCTACTCTACCTTTGAGATTATTAAAATGAGAAATGCTAGGAATACTGACACAGTCTTTTG
>Glyma12g30490.1 sequence type=CDS gene model=Glyma12g30490 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTTCGTCGCGAGTAGATCTGGATGGGAACCCCATAAAGCCCATCACCATTTGCATGATTGGCGCCGGTGGCTTCATTGGGTCCCACCTCTGCGAGAAGCTCATGTCGGAGACCCCTCACAGTGTCCTCGCCTTGGATGTCTACAATGACAAGATCAAACACCTCTTGGAACCCCACACGCTCCCTTGGGCCTCTCGCATCCAGTTCCATCGCCTCAACATCAAGCACGATTCCCGTCTCGAAGGCCTCATCAAAATGTCAGATCTGACTATTAATCTGGCTGCCATTTGCACTCCCGCGGATTACAACACGCGCCCTCTTGACACAATTTACAGCAACTTCATCGACGCGCTTCCTGTGGTGAAGTACTGTTCAGAGAACAACAAGCGTCTCATTCATTTCTCTACGTGTGAAGTCTATGGGAAAACGATTGGAAGCTTCCTCCCCAAAGATAGTCCTCTTCGTCAGGATCCTGCATACTACGTACTTAAGGAGGATGAGTCTCCTTGTATTTTTGGTTCAATTGAAAAGCAGAGATGGTCCTATGCCTGTGCTAAGCAGTTGATTGAGAGGCTTGTTTATGCTGAGGGTGCTGAAAATGGCTTGGAATTCACAATTGTGAGGCCTTTTAATTGGATTGGACCACGAATGGATTTCATTCCCGGCATTGATGGCCCAAGTGAGGGTGTTCCTCGGGTTCTGGCATGCTTTAGCAATAATCTCCTCCGTGGAGAGCCCCTCAAGCTTGTGGATGGTGGCCAATCCCAGAGGACTTTTGTGTATATTAAGGATGCTATTGAAGCTGTCTTATTGATGATTGAAAATCCCGCCAGGGCTAATGGACATATTTTTAATGTGGGAAACCCAAACAATGAGGTTACAGTTAGGCAGCTTGCTGAAATGATGACTCAGGTTTATTCAAAGGTAAGTGGAGAAGCACCTCTGGAAAAACCTACTATTGATGTGAGCTCCAAAGAATTTTATGGTGAGGGATATGATGATAGTGACAAGAGAATTCCTGACATGACCATAATTAATAGGCAGCTTGGCTGGAATCCTAAAACCTCACTTTGGGACCTGCTTGAATCAACTCTCACCTATCAGCACAGGACTTATGCTGAAGCCGTTAAGAAAGTCATTGCAAAGCCCGTGGCAAGTTAA >Glyma12g30490.2 sequence type=CDS gene model=Glyma12g30490 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTTCGTCGCGAGTAGATCTGGATGGGAACCCCATAAAGCCCATCACCATTTGCATGATTGGCGCCGGTGGCTTCATTGGGTCCCACCTCTGCGAGAAGCTCATGTCGGAGACCCCTCACAGTGTCCTCGCCTTGGATGTCTACAATGACAAGATCAAACACCTCTTGGAACCCCACACGCTCCCTTGGGCCTCTCGCATCCAGTTCCATCGCCTCAACATCAAGCACGATTCCCGTCTCGAAGGCCTCATCAAAATGTCAGATCTGACTATTAATCTGGCTGCCATTTGCACTCCCGCGGATTACAACACGCGCCCTCTTGACACAATTTACAGCAACTTCATCGACGCGCTTCCTGTGGTGAAGTACTGTTCAGAGAACAACAAGCGTCTCATTCATTTCTCTACGTGTGAAGTCTATGGGAAAACGATTGGAAGCTTCCTCCCCAAAGATAGTCCTCTTCGTCAGGATCCTGCATACTACGTACTTAAGGAGGATGAGTCTCCTTGTATTTTTGGTTCAATTGAAAAGCAGAGATGGTCCTATGCCTGTGCTAAGCAGTTGATTGAGAGGCTTGTTTATGCTGAGGGTGCTGAAAATGGCTTGGAATTCACAATTGTGAGGCCTTTTAATTGGATTGGACCACGAATGGATTTCATTCCCGGCATTGATGGCCCAAGTGAGGGTGTTCCTCGGGTTCTGGCATGCTTTAGCAATAATCTCCTCCGTGGAGAGCCCCTCAAGCTTGTGGATGGTGGCCAATCCCAGAGGACTTTTGTGTATATTAAGGATGCTATTGAAGCTGTCTTATTGATGATTGTAGGTTCCCATATCCAATCTTTTTATGCAACTTTATATATTTTAAGTTCTGATTGTAGAATTTCATCTTTAAACTATTATTCTTGTTGGATGGTTCAACTAAATGTGAACGATAATTTTTAA
>Glyma12g30490.1 sequence type=predicted peptide gene model=Glyma12g30490 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MASSRVDLDGNPIKPITICMIGAGGFIGSHLCEKLMSETPHSVLALDVYNDKIKHLLEPHTLPWASRIQFHRLNIKHDSRLEGLIKMSDLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYGKTIGSFLPKDSPLRQDPAYYVLKEDESPCIFGSIEKQRWSYACAKQLIERLVYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRGEPLKLVDGGQSQRTFVYIKDAIEAVLLMIENPARANGHIFNVGNPNNEVTVRQLAEMMTQVYSKVSGEAPLEKPTIDVSSKEFYGEGYDDSDKRIPDMTIINRQLGWNPKTSLWDLLESTLTYQHRTYAEAVKKVIAKPVAS* >Glyma12g30490.2 sequence type=predicted peptide gene model=Glyma12g30490 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MASSRVDLDGNPIKPITICMIGAGGFIGSHLCEKLMSETPHSVLALDVYNDKIKHLLEPHTLPWASRIQFHRLNIKHDSRLEGLIKMSDLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYGKTIGSFLPKDSPLRQDPAYYVLKEDESPCIFGSIEKQRWSYACAKQLIERLVYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRGEPLKLVDGGQSQRTFVYIKDAIEAVLLMIVGSHIQSFYATLYILSSDCRISSLNYYSCWMVQLNVNDNF*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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