Glyma12g30420 - SoyBase

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Report for Sequence Feature Glyma12g30420

Feature Type:	gene_model
Chromosome:	Gm12
Start:	34041185
stop:	34045764
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma12g30420

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G22860	AT	Annotation by Michelle Graham. TAIR10: Serine carboxypeptidase S28 family protein \| chr5:7639511-7642945 REVERSE LENGTH=502	SoyBase	E_val: 0	ISS
GO:0006508	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteolysis	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0008233	GO-mf	Annotation by Michelle Graham. GO Molecular Function: peptidase activity	SoyBase	N/A	ISS
GO:0008236	GO-mf	Annotation by Michelle Graham. GO Molecular Function: serine-type peptidase activity	SoyBase	N/A	ISS
KOG2183	KOG	Prolylcarboxypeptidase (angiotensinase C)	JGI		ISS
PTHR11010	Panther	PROTEASE S28 PRO-X CARBOXYPEPTIDASE-RELATED	JGI		ISS
PTHR11010:SF13	Panther	SERINE CARBOXYPEPTIDASE S28 FAMILY PROTEIN	JGI		ISS
PF05577	PFAM	Serine carboxypeptidase S28	JGI		ISS
UniRef100_B9SCN5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Lysosomal Pro-X carboxypeptidase, putative n=1 Tax=Ricinus communis RepID=B9SCN5_RICCO	SoyBase	E_val: 0	ISS
UniRef100_UPI000233C57D	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233C57D related cluster n=1 Tax=unknown RepID=UPI000233C57D	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma12g30420

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma12g30420 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.12g179700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma12g30420

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma12g30420

Limit To All Plant Sequences

>Glyma12g30420.1   sequence type=CDS   gene model=Glyma12g30420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGATCCGTTTTGCCCTCATTTCAATGGCTTTCTTTGTTCTTTCTAATTATCTCAGTTAATGTTTGTGCTTTCAAAATTCCAAGGTTAGGAACTTGGCAGAGATCAACCAAGGAACGCGACCCCGAAATCAGTTCTTCCTTGCACTTGTCTGATGATGACCTCAAAACATTTTATTATACCCAAAGACTCGATCACTTCAACTACAGACCTGACAGCTACCACACTTTCCAACAAAGATATATGGTCAATTTCAAGTACTGGGGTGGAGCTAAATCAAGTGCACCCATTTTTGCCTTCTTTGGTGCAGAAGGACCAGTGGATGAGGATGCAAAATATATCGGGTTTCTCAGAGATAACGCTCCTCAGTTCAATGCTCTTATTGTTTTTATCGAGCATAGATACTATGGGAAATCAATACCATTTGGGTCAAGCGAAGAAGCAATGAGAAATGCAAGTACTCGTGGCTACTTCAACTCAGCCCAAGCAATAGCAGACTATGCTGCTGTGCTTCTACACATCAAGAAAACTTTGTCTGCTCAGAATTCCCCCATAATCGTTATTGGAGGCTCTTATGGTGGAATGCTTGCATCATGGTTTCGCCTAAAGTATCCCCACATTGCTCTTGGTGCTCTTGCTTCATCAGCACCAATTCTTTATTTCAACGGCATTGCCCCACAAGCCGGATACTACTATATTGTCACCAAGGATTTCAAAGAAACTAGTGAGAGCTGTTACCAAACTATACGTAAATCATGGTCTGAAATTGACAGAGTTGCTAAGAAGCCAAATGGTCTTTCAATCCTCAGCAAGAGATTTAAAACTTGCGACAAATTGAACAAAAGTTTTGATCTCAAGGACTACTTGGACTCGTTATATACGGACGCAGCTCAATACAATTACCCTTCTGAGCACCCAGTTAAGATCGTATGTGGAGCAATTGACGCAGCTGCTAAGAAAACCGATATTCTTGGCCAAATATTTGAAGGTGTTGTTGCTTATAAGCAACATCGTTCATGTTATGACATGAATGAATATAACCATCCAACTGAATCTTTCCTGGGTTGGAGATGGCAGACATGCAGCGAGATAATTATGCCAATAGGTCATGAAAAGAACGACTCAATGTTTCCACCAGCACCTTTCAATATGAAGACATTTGTTCAAGAGTGTAGGAGCTTATATGGTGTCCTTCCCCAGCCTCATTGGGTGACCACATATTATGGGGGTCCTGATTTGAAACTGATCCTCCATAGGTTTGCCAGCAACATCATATTCTCCAATGGATTGCGAGATCCGTACAGTTCTGGCGGGGTGTTGGAGAGTATTTCGAACACTGTCGTTGCCGTTACTACTGTAAATGGGTGTCACTGCCTGGACATACAGTCAAGAAAGGCAAATGATCCTCAATGGTTGGTGACGCAGAGAAATACCGAGGTCAAGATAATCAAAGGCTGGATTGCCGAGTACAAAGCTGATCTAATAGCACTTACTAAACAAATCAAAGCACCAGCAGAACCCAAAAGCTAA

Predicted protein sequences of Glyma12g30420

Limit To All Plant Sequences

>Glyma12g30420.1   sequence type=predicted peptide   gene model=Glyma12g30420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGSVLPSFQWLSLFFLIISVNVCAFKIPRLGTWQRSTKERDPEISSSLHLSDDDLKTFYYTQRLDHFNYRPDSYHTFQQRYMVNFKYWGGAKSSAPIFAFFGAEGPVDEDAKYIGFLRDNAPQFNALIVFIEHRYYGKSIPFGSSEEAMRNASTRGYFNSAQAIADYAAVLLHIKKTLSAQNSPIIVIGGSYGGMLASWFRLKYPHIALGALASSAPILYFNGIAPQAGYYYIVTKDFKETSESCYQTIRKSWSEIDRVAKKPNGLSILSKRFKTCDKLNKSFDLKDYLDSLYTDAAQYNYPSEHPVKIVCGAIDAAAKKTDILGQIFEGVVAYKQHRSCYDMNEYNHPTESFLGWRWQTCSEIIMPIGHEKNDSMFPPAPFNMKTFVQECRSLYGVLPQPHWVTTYYGGPDLKLILHRFASNIIFSNGLRDPYSSGGVLESISNTVVAVTTVNGCHCLDIQSRKANDPQWLVTQRNTEVKIIKGWIAEYKADLIALTKQIKAPAEPKS*

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