SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G60790 | AT | Annotation by Michelle Graham. TAIR10: ABC transporter family protein | chr5:24453760-24455767 REVERSE LENGTH=595 | SoyBase | E_val: 0 | ISS |
| GO:0006007 | GO-bp | Annotation by Michelle Graham. GO Biological Process: glucose catabolic process | SoyBase | N/A | ISS |
| GO:0019243 | GO-bp | Annotation by Michelle Graham. GO Biological Process: methylglyoxal catabolic process to D-lactate | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| GO:0005215 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transporter activity | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| GO:0016887 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATPase activity | SoyBase | N/A | ISS |
| GO:0017111 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleoside-triphosphatase activity | SoyBase | N/A | ISS |
| KOG0927 | KOG | Predicted transporter (ABC superfamily) | JGI | ISS | |
| PTHR19211 | Panther | ATP-BINDING TRANSPORT PROTEIN-RELATED | JGI | ISS | |
| PTHR19211:SF15 | Panther | gb def: abc transporter, atp-binding protein, ef-3 family [deinococcus radiodurans] | JGI | ISS | |
| PF00005 | PFAM | ABC transporter | JGI | ISS | |
| UniRef100_B9N856 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: ABC transporter family protein n=1 Tax=Populus trichocarpa RepID=B9N856_POPTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1LTM3 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LTM3_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma12g30100 not represented in the dataset |
Glyma12g30100 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma13g39790 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.12g177500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma12g30100.4 sequence type=transcript gene model=Glyma12g30100 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TTATCTGCAACATTCTAAACTTTAGGTAACTCCCTCCGGGACACGTGGTCCGTGGAAGCCGACACTTCTATATATTCGAAACCTCACCTTCTTCCCACTCCAACCGAAGCCTGAAGAACCCTAAGCCCTCTCTTGCTCGGGATTTTACTCTCACGGTAGCACCAGACATAGAACTCTAGATCTCTTGTTTTCCTATCCAATAGATTAGAGATTGAAGATGGTGTCTGACGCGAGCAAGAAGAAGGCTGCGCAGAAGAAGGCGGCGGCAGCGGCCAAGAGAGGAGGCAAAGCAGCAGCTGCTTCGTCGAAAACGACGTCGTCGGAGAAGGCCGCCGACAAGCTTGCCAACGGAATTGGGGAAATTCAGATATCCGATCGAACCTGCACCGGTGTCCTCTGCTCGCATCCTCTTTCCAGGGATATTAGGATAGAATCTCTGTCAGTTACTTTTCATGGACATGATTTGATAGTTGATTCCGAATTGGAGCTAAATTATGGAAGACGTTATGGCTTGCTTGGATTAAATGGTTGTGGGAAGTCTACCCTGCTTACGGCTATAGGTTGTCGAGAGCTACCTATTCCAGACCACATGGATATTTATCACCTTACCAGGGAAATTGAAGCCTCTGACATGTCTGCATTGGAGGCTGTCATAAGCTGTGATGAGGAAAGGTTGAGATTGGAGAAAGAAGCTGAAGCTTTGGCAGCGCAGGATGATGGGGGTGGGGAAGCTCTTGAACGTATTTATGAACGATTGGAAGCCATTGATGCATCAACTGCAGAAAAGCGTGCTGCTGAAATTTTATTTGGTCTTGGTTTCAACAAGCAGATGCAAGCAAAGAAGACACGCGATTTCTCTGGTGGTTGGAGAATGAGGATTGCTTTAGCACGTGCTCTATTTATGAACCCTACCATCCTTTTACTTGATGAACCAACCAATCACCTTGATTTGGAAGCTTGTGTGTGGCTCGAAGAGAATCTGAAGAAGTTTGAACGTATTCTGGTTGTGGTTTCACACTCACAGGATTTCCTTAATGGTGTCTGCACAAATATCATCCACATGCAAAACAAGAAGCTGAAACTCTTCACTGGTAATTATGATCAATATGTTCAGACACGTGCTGAACTGGAAGAGAACCAGATGAAGCAGTACAAATGGGAGCAGGAGCAAATTGCCTCGATGAAGGAATACATTGCCCGATTTGGTCATGGATCAGCAAAACTAGCCCGCCAAGCTCAGAGTAAAGAGAAAACTCTTGCAAAAATGGAGCGGGGTGGACTTGCAGAGAAGGTGGTAAGAGACAAAGTTTTGGTATTCCGCTTTGTTGATGTGGGAAAACTTCCCCCGCCTGTCCTCCAGTTTGTTGAGGTGACATTTGGGTACACTCCTGATAATCTGATCTACAAGAACCTTGACTTTGGGGTTGATTTAGACTCTAGGATTGCTCTGGTTGGACCCAATGGAGCTGGGAAGAGTACGTTACTGAAGCTAATGACTGGTGATTTGGAACCTCTAGATGGCATGGTTCGACGCCACAATCACCTTCGGATTGCACAATATCACCAGCACTTGGCTGAGAAGCTAGACTTGGAAATGTCTGCCCTCCAGTATATGATAAAAGAATACCCTGGAAACGAGGAGGAGAGGATGAGAGCAGCCATTGGGAAATTTGGACTGTCTGGCAAAGCGCAGGTCATGCCTATGAAGAATTTATCCGATGGGCAGAGGAGCCGTGTGATATTCGCATGGTTAGCTTATAGACAGCCTCACCTGCTACTTTTGGATGAGCCAACGAACCATTTGGATATAGAAACAATTGACTCATTGGCTGAGGCATTGAATGAATGGGATGGTGGCATGGTGCTTGTTAGCCATGATTTTAGGCTCATAAATCAGGTTGCCCATGAGATATGGGTGTGTGCTGATCAAGCTGTGACCAGATGGGAAGGTGACATTATGGATTTCAAGGAGCACCTAAGGTCAAAGGCGGGTTTATCTGACTGAAGAAGATAGTGGGACTGGGACACTCCAGCATATCACCATCTAAGGACTACGTTACGTACTGCTGCTTGAGTTGGATTTCTCCATGGTGATTTTTTTTATTTAAATGGCTCTGCAGAGTAATCGCTTTGGAAATCATGTCCTCCCCCGTTAGATTGCAGTAATTTGTATTTTTATCCTTTAGTTGCCGATCAGCATGATAAATAACAGGGGACCTTAGATGTAATACCTATCTGTATGTGAATGATATGTTGTACCTAGAGTATTATATTTACTGCACTAGTTTCCTCTGCCTCTCTTCCTCCTAGTAATTTTT
>Glyma12g30100.3 sequence type=CDS gene model=Glyma12g30100 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGTGTCTGACGCGAGCAAGAAGAAGGCTGCGCAGAAGAAGGCGGCGGCAGCGGCCAAGAGAGGAGGCAAAGCAGCAGCTGCTTCGTCGAAAACGACGTCGTCGGAGAAGGCCGCCGACAAGCTTGCCAACGGAATTGGGGAAATTCAGATATCCGATCGAACCTGCACCGGTGTCCTCTGCTCGCATCCTCTTTCCAGGGATATTAGGATAGAATCTCTGTCAGTTACTTTTCATGGACATGATTTGATAGTTGATTCCGAATTGGAGCTAAATTATGGAAGACGTTATGGCTTGCTTGGATTAAATGGTTGTGGGAAGTCTACCCTGCTTACGGCTATAGGTTGTCGAGAGCTACCTATTCCAGACCACATGGATATTTATCACCTTACCAGGGAAATTGAAGCCTCTGACATGTCTGCATTGGAGGCTGTCATAAGCTGTGATGAGGAAAGGTTGAGATTGGAGAAAGAAGCTGAAGCTTTGGCAGCGCAGGATGATGGGGGTGGGGAAGCTCTTGAACGTATTTATGAACGATTGGAAGCCATTGATGCATCAACTGCAGAAAAGCGTGCTGCTGAAATTTTATTTGGTCTTGGTTTCAACAAGCAGATGCAAGCAAAGAAGACACGCGATTTCTCTGGTGGTTGGAGAATGAGGATTGCTTTAGCACGTGCTCTATTTATGAACCCTACCATCCTTTTACTTGATGAACCAACCAATCACCTTGATTTGGAAGCTTGTGTGTGGCTCGAAGAGAATCTGAAGAAGTTTGAACGTATTCTGGTTGTGGTTTCACACTCACAGGATTTCCTTAATGGTGTCTGCACAAATATCATCCACATGCAAAACAAGAAGCTGAAACTCTTCACTGGTAATTATGATCAATATGTTCAGACACGTGCTGAACTGGAAGAGAACCAGATGAAGCAGTACAAATGGGAGCAGGAGCAAATTGCCTCGATGAAGGAATACATTGCCCGATTTGGTCATGGATCAGCAAAACTAGCCCGCCAAGCTCAGAGTAAAGAGAAAACTCTTGCAAAAATGGAGCGGGGTGGACTTGCAGAGAAGGTGGTAAGAGACAAAGTTTTGGTATTCCGCTTTGTTGATGTGGGAAAACTTCCCCCGCCTGTCCTCCAGTTTGTTGAGGTGACATTTGGGTACACTCCTGATAATCTGATCTACAAGAACCTTGACTTTGGGGTTGATTTAGACTCTAGGATTGCTCTGGTTGGACCCAATGGAGCTGGGAAGAGTACGTTACTGAAGCTAATGACTGGTGATTTGGAACCTCTAGATGGCATGGTTCGACGCCACAATCACCTTCGGATTGCACAATATCACCAGCACTTGGCTGAGAAGCTAGACTTGGAAATGTCTGCCCTCCAGTATATGATAAAAGAATACCCTGGAAACGAGGAGGAGAGGATGAGAGCAGCCATTGGGAAATTTGGACTGTCTGGCAAAGCGCAGGTCATGCCTATGAAGAATTTATCCGATGGGCAGAGGAGCCGTGTGATATTCGCATGGTTAGCTTATAGACAGCCTCACCTGCTACTTTTGGATGAGCCAACGAACCATTTGGATATAGAAACAATTGACTCATTGGCTGAGGCATTGAATGAATGGGATGGTGGCATGGTGCTTGTTAGCCATGATTTTAGGCTCATAAATCAGGTTGCCCATGAGATATGGGTGTGTGCTGATCAAGCTGTGACCAGATGGGAAGGTGACATTATGGATTTCAAGGAGCACCTAAGGTCAAAGGCGGGTTTATCTGACTGA >Glyma12g30100.4 sequence type=CDS gene model=Glyma12g30100 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGTGTCTGACGCGAGCAAGAAGAAGGCTGCGCAGAAGAAGGCGGCGGCAGCGGCCAAGAGAGGAGGCAAAGCAGCAGCTGCTTCGTCGAAAACGACGTCGTCGGAGAAGGCCGCCGACAAGCTTGCCAACGGAATTGGGGAAATTCAGATATCCGATCGAACCTGCACCGGTGTCCTCTGCTCGCATCCTCTTTCCAGGGATATTAGGATAGAATCTCTGTCAGTTACTTTTCATGGACATGATTTGATAGTTGATTCCGAATTGGAGCTAAATTATGGAAGACGTTATGGCTTGCTTGGATTAAATGGTTGTGGGAAGTCTACCCTGCTTACGGCTATAGGTTGTCGAGAGCTACCTATTCCAGACCACATGGATATTTATCACCTTACCAGGGAAATTGAAGCCTCTGACATGTCTGCATTGGAGGCTGTCATAAGCTGTGATGAGGAAAGGTTGAGATTGGAGAAAGAAGCTGAAGCTTTGGCAGCGCAGGATGATGGGGGTGGGGAAGCTCTTGAACGTATTTATGAACGATTGGAAGCCATTGATGCATCAACTGCAGAAAAGCGTGCTGCTGAAATTTTATTTGGTCTTGGTTTCAACAAGCAGATGCAAGCAAAGAAGACACGCGATTTCTCTGGTGGTTGGAGAATGAGGATTGCTTTAGCACGTGCTCTATTTATGAACCCTACCATCCTTTTACTTGATGAACCAACCAATCACCTTGATTTGGAAGCTTGTGTGTGGCTCGAAGAGAATCTGAAGAAGTTTGAACGTATTCTGGTTGTGGTTTCACACTCACAGGATTTCCTTAATGGTGTCTGCACAAATATCATCCACATGCAAAACAAGAAGCTGAAACTCTTCACTGGTAATTATGATCAATATGTTCAGACACGTGCTGAACTGGAAGAGAACCAGATGAAGCAGTACAAATGGGAGCAGGAGCAAATTGCCTCGATGAAGGAATACATTGCCCGATTTGGTCATGGATCAGCAAAACTAGCCCGCCAAGCTCAGAGTAAAGAGAAAACTCTTGCAAAAATGGAGCGGGGTGGACTTGCAGAGAAGGTGGTAAGAGACAAAGTTTTGGTATTCCGCTTTGTTGATGTGGGAAAACTTCCCCCGCCTGTCCTCCAGTTTGTTGAGGTGACATTTGGGTACACTCCTGATAATCTGATCTACAAGAACCTTGACTTTGGGGTTGATTTAGACTCTAGGATTGCTCTGGTTGGACCCAATGGAGCTGGGAAGAGTACGTTACTGAAGCTAATGACTGGTGATTTGGAACCTCTAGATGGCATGGTTCGACGCCACAATCACCTTCGGATTGCACAATATCACCAGCACTTGGCTGAGAAGCTAGACTTGGAAATGTCTGCCCTCCAGTATATGATAAAAGAATACCCTGGAAACGAGGAGGAGAGGATGAGAGCAGCCATTGGGAAATTTGGACTGTCTGGCAAAGCGCAGGTCATGCCTATGAAGAATTTATCCGATGGGCAGAGGAGCCGTGTGATATTCGCATGGTTAGCTTATAGACAGCCTCACCTGCTACTTTTGGATGAGCCAACGAACCATTTGGATATAGAAACAATTGACTCATTGGCTGAGGCATTGAATGAATGGGATGGTGGCATGGTGCTTGTTAGCCATGATTTTAGGCTCATAAATCAGGTTGCCCATGAGATATGGGTGTGTGCTGATCAAGCTGTGACCAGATGGGAAGGTGACATTATGGATTTCAAGGAGCACCTAAGGTCAAAGGCGGGTTTATCTGACTGA
>Glyma12g30100.3 sequence type=predicted peptide gene model=Glyma12g30100 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MVSDASKKKAAQKKAAAAAKRGGKAAAASSKTTSSEKAADKLANGIGEIQISDRTCTGVLCSHPLSRDIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGCRELPIPDHMDIYHLTREIEASDMSALEAVISCDEERLRLEKEAEALAAQDDGGGEALERIYERLEAIDASTAEKRAAEILFGLGFNKQMQAKKTRDFSGGWRMRIALARALFMNPTILLLDEPTNHLDLEACVWLEENLKKFERILVVVSHSQDFLNGVCTNIIHMQNKKLKLFTGNYDQYVQTRAELEENQMKQYKWEQEQIASMKEYIARFGHGSAKLARQAQSKEKTLAKMERGGLAEKVVRDKVLVFRFVDVGKLPPPVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRIALVGPNGAGKSTLLKLMTGDLEPLDGMVRRHNHLRIAQYHQHLAEKLDLEMSALQYMIKEYPGNEEERMRAAIGKFGLSGKAQVMPMKNLSDGQRSRVIFAWLAYRQPHLLLLDEPTNHLDIETIDSLAEALNEWDGGMVLVSHDFRLINQVAHEIWVCADQAVTRWEGDIMDFKEHLRSKAGLSD* >Glyma12g30100.4 sequence type=predicted peptide gene model=Glyma12g30100 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MVSDASKKKAAQKKAAAAAKRGGKAAAASSKTTSSEKAADKLANGIGEIQISDRTCTGVLCSHPLSRDIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGCRELPIPDHMDIYHLTREIEASDMSALEAVISCDEERLRLEKEAEALAAQDDGGGEALERIYERLEAIDASTAEKRAAEILFGLGFNKQMQAKKTRDFSGGWRMRIALARALFMNPTILLLDEPTNHLDLEACVWLEENLKKFERILVVVSHSQDFLNGVCTNIIHMQNKKLKLFTGNYDQYVQTRAELEENQMKQYKWEQEQIASMKEYIARFGHGSAKLARQAQSKEKTLAKMERGGLAEKVVRDKVLVFRFVDVGKLPPPVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRIALVGPNGAGKSTLLKLMTGDLEPLDGMVRRHNHLRIAQYHQHLAEKLDLEMSALQYMIKEYPGNEEERMRAAIGKFGLSGKAQVMPMKNLSDGQRSRVIFAWLAYRQPHLLLLDEPTNHLDIETIDSLAEALNEWDGGMVLVSHDFRLINQVAHEIWVCADQAVTRWEGDIMDFKEHLRSKAGLSD*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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