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Report for Sequence Feature Glyma12g29810

Feature Type:gene_model
Chromosome:Gm12
Start:33267949
stop:33273303
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma12g29810
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G28305AT Annotation by Michelle Graham. TAIR10: Putative lysine decarboxylase family protein | chr2:12081186-12084307 FORWARD LENGTH=213 SoyBaseE_val: 3.00E-129ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PF03641PFAM Possible lysine decarboxylase JGI ISS
UniRef100_B9SVB4UniRef Annotation by Michelle Graham. Most informative UniRef hit: Carboxy-lyase, putative n=1 Tax=Ricinus communis RepID=B9SVB4_RICCO SoyBaseE_val: 2.00E-135ISS
UniRef100_I1LTK5UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LTK5_SOYBN SoyBaseE_val: 5.00E-152ISS

Expression Patterns of Glyma12g29810
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma12g29810
ParalogEvidenceComments
Glyma13g39980 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma12g29810 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.12g174900 Wm82.a2.v1IGC As supplied by JGI

References for Glyma12g29810
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma12g29810
>Glyma12g29810.1   sequence type=CDS   gene model=Glyma12g29810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGAAAGAAACAGAGATGAAGCAATCCAAGTTCAAGAGGATTTGTGTCTTCTGTGGCAGTAGTCCAGGGAACAAAACTAGTTATAAGGACGCTGCTATTGAGCTTGGAAGAGAATTGGTGTCAAGAAATATTGATCTAGTGTATGGAGGGGGCAGCATTGGTTTGATGGGGTTGATTTCTCAGGCTGTTTACGAGGGTGGTCGCCATGTAACTGGAGTTATTCCCAAGACACTTATGCCAAGAGAGCTCACTGGAGAAACAGTGGGGGAAGTGAAGGCAGTAGCAAACATGCACCAAAGGAAAGCTGAGATGGCTAAGCGCTCTGATGCCTTCATTGCCTTACCCGGTGGCTATGGGACACTTGAAGAACTCCTTGAGGTGATAACATGGGCTCAACTTGGCATCCATGATAAACCGGTGGGATTGCTGAATGTTGATGGATACTACAATACCTTTTTGTCTTTTATTGACAAAGCGGTGGAGGAAGGCTTCATCAGCCCCACTGCTCGCCATATAATTGTATCTGCCCCAACACCAAAAGAGCTTGTCAAAGAGATGGAGGAATATTTCCCACAACATGAAAGAGTTGTCTCTAAGCTAAGCTGGGAAAGTGAACAGCTACATTAG
Predicted protein sequences of Glyma12g29810
>Glyma12g29810.1   sequence type=predicted peptide   gene model=Glyma12g29810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEKETEMKQSKFKRICVFCGSSPGNKTSYKDAAIELGRELVSRNIDLVYGGGSIGLMGLISQAVYEGGRHVTGVIPKTLMPRELTGETVGEVKAVANMHQRKAEMAKRSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNTFLSFIDKAVEEGFISPTARHIIVSAPTPKELVKEMEEYFPQHERVVSKLSWESEQLH*






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