SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G28310 | AT | Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF707) | chr2:12085773-12087888 FORWARD LENGTH=374 | SoyBase | E_val: 0 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0005768 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: endosome | SoyBase | N/A | ISS |
| GO:0005794 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus | SoyBase | N/A | ISS |
| GO:0005802 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: trans-Golgi network | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0016757 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups | SoyBase | N/A | ISS |
| PF05212 | PFAM | Protein of unknown function (DUF707) | JGI | ISS | |
| UniRef100_G7IU58 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Lysine ketoglutarate reductase trans-splicing-like protein n=1 Tax=Medicago truncatula RepID=G7IU58_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1LTK4 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LTK4_SOYBN | SoyBase | E_val: 0 | ISS |
|
Glyma12g29800 not represented in the dataset |
Glyma12g29800 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma13g39990 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.12g174800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma12g29800.1 sequence type=CDS gene model=Glyma12g29800 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCATCGCAATTCACTTAAAAGATCAAATGATAGTACCCGGATTATCATCACAGCTATTATGGGAATTGCCTTTGGATTTTTTATTGGTATTTCAATTTCATCTGTGCATTTGACTAAGCCTGTAGGGAATTCTTTTGATGTACCTGTAGCTGAATCTGAAATAGACAGATTTTCAGCTGAAGTAAACAGATCTCCTGCTGTTATTGACGAGTCTTCTGGAACCAAAAATCTTGAAACCCTAGGGTCAATTAGATTACCAAAGATATTTGTTGCATCAAATCCTCGTGGAGCTGAATCACTACCCCCTGGAATCGTTGTATCAGAATCAGATTTTTATTTACGAAGACTATGGGGTGAACCTAGTGAGGATCTGAAGAAAAAGCCGAAGTATTTAGTTACATTCACTGTTGGTTATGAACAAAGGCATAATATCAATGCTACAGTGAAAAAGTTTTCTGATGATTTTGCAATTTTGCTCTTTCATTATGATGGTCGGACTAGTGAATGGGATCAATTTGAGTGGTCAAGGAATGCAATCCATGTTAGTGCAAGGAAACAAACTAAATGGTGGTATGCTAAAAGATTTTTGCACCCTGATATAGTATCAGCTTATGAATATATTTTTATTTGGGATGAAGATCTTGGAGTAGAACACTTCAATGCAGACAAGTATATTCATTTAGTGAAAAAATATGGTTTGGAGATCTCTCAACCTGGTCTTGAGCCTAATAATGGATTGACATGGGAGATGACAAAAAGAAGGGGTGACAAAGAAGTTCACATGGTGACAGAAGAGAAACCAGGCTGGTGTAGTGATCCACATTTGCCTCCTTGTGCTGCATTTGTGGAAATTATGGCACCTGTCTTTTCTCGTGAAGCTTGGCGTTGTGTGTGGCACATGATTCAGAATGATCTAGTGCATGGATGGGGATTGGACTTTGCTCTCAGAAGATGTGTAGAGCCAGCACATGAAAAAATTGGTGTAATTGATTCACAATGGATTGTTCATCAAGTAATTCCTTCTCTTGGGAACCAGGGAGAGTCTGACAAAGGAAAAATGCCATGGGATTCGGTCCGAGCCAGATGCAAAAGTGAATGGGCCCAGTTTCAACTTCGCGTAACCAATGCTGATAAGTCTTATCTTGAAGGACATAAACGTAATGGGAAGGATTGA
>Glyma12g29800.1 sequence type=predicted peptide gene model=Glyma12g29800 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MHRNSLKRSNDSTRIIITAIMGIAFGFFIGISISSVHLTKPVGNSFDVPVAESEIDRFSAEVNRSPAVIDESSGTKNLETLGSIRLPKIFVASNPRGAESLPPGIVVSESDFYLRRLWGEPSEDLKKKPKYLVTFTVGYEQRHNINATVKKFSDDFAILLFHYDGRTSEWDQFEWSRNAIHVSARKQTKWWYAKRFLHPDIVSAYEYIFIWDEDLGVEHFNADKYIHLVKKYGLEISQPGLEPNNGLTWEMTKRRGDKEVHMVTEEKPGWCSDPHLPPCAAFVEIMAPVFSREAWRCVWHMIQNDLVHGWGLDFALRRCVEPAHEKIGVIDSQWIVHQVIPSLGNQGESDKGKMPWDSVRARCKSEWAQFQLRVTNADKSYLEGHKRNGKD*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
