SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G28320 | AT | Annotation by Michelle Graham. TAIR10: Pleckstrin homology (PH) and lipid-binding START domains-containing protein | chr2:12095161-12099424 FORWARD LENGTH=737 | SoyBase | E_val: 0 | ISS |
| GO:0007165 | GO-bp | Annotation by Michelle Graham. GO Biological Process: signal transduction | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0005543 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: phospholipid binding | SoyBase | N/A | ISS |
| GO:0035091 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: phosphatidylinositol binding | SoyBase | N/A | ISS |
| PTHR12136 | Panther | STEROIDOGENIC ACUTE REGULATORY (STAR) | JGI | ISS | |
| PTHR12136:SF13 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF00169 | PFAM | PH domain | JGI | ISS | |
| PF01852 | PFAM | START domain | JGI | ISS | |
| PF07059 | PFAM | Protein of unknown function (DUF1336) | JGI | ISS | |
| UniRef100_F4IHT0 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Pleckstrin homology (PH) and lipid-binding START domain-containing protein n=3 Tax=Arabidopsis thaliana RepID=F4IHT0_ARATH | SoyBase | E_val: 0 | ISS |
| UniRef100_I1LTK2 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LTK2_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma12g29750 not represented in the dataset |
Glyma12g29750 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma13g40010 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.12g174400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma12g29750.1 sequence type=CDS gene model=Glyma12g29750 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCAAGTAGCGGTGCTGCAACAGCGGCGTTGCAGAGCGATGCAAGTAGTAGAATGGAAGGCTGGTTGTACCTTATACGCTTCAACCGTATTGGACTTCAGTTCTCTCGGAAGCGTTACTTCGTTCTCGATGGTAACCTTCTCCGCAGCTTCAAATCAGTTCCTGTTTCAAATAATCAGGATCCTGTTAGAAGCGCGATTGTAGATTCCTGCATTCGAGTCATGGATAATGGAAGGGAGAGCGTTAACCGAAAAGTGTTCTTCATATTCACTCTCTATAACACTTCGAATCACAATGATCAGTTAAAGTTTGGAGCAAGCCGTCCTGAAGAAGCGGCGAGGTGGATTCAGTCCTTTCATGAAGCATCGTTAAGGGGTGCGCCTGACGGAGGAGATGATGCTGTAGGTTGTTCTAAGAGGAGATGGCAATCCTTTAGACTCAGTGGATCTTCTAGTAGTATAAGTCACCCAAATTCTGTAGACTGGACTCTTTCTTCTGCTGATGTTATTGCCCCTTCACCATGGACAATCTTTGGCTGCCAAAATGGTTTACGACTATTCAAGGAAGCAAAAGACAGGGATTCTAATGGGAAGAAATGGGATGATCACCCTGCAATAATGGCTGTTGGTGTGGTTGATGGAACTTCAGAAGCCATCTTCCAGACTCTTATGTCGCTTGGTCCTTCAAGATCAGAATGGGATTTCTGTTTCTACAAGGGAAATGTGGTGGAGCACTTGGATGGTCACACTGACATTATTCACAAACAGCTATTTAGCGATTGGTTGCCTTGGGGAATGAAACGAAGAGATCTCTTGTTGCGGCGTTATTGGAGGAGAGAAGATGATGGAACTTATGTTATTCTTTACCATTCCGTGTTTCACAAGAAGTGCCCTCCCCAGAAAGGCTATGTGCGTGCTTGTCTTAAAAGTGGAGGGTATGTTATATCACCAGTGAACAAAGGAAAGCAATCAGTTGTAAAGCATATGCTTGCTATTGATTGGAAATGCTGGAGATCATATCTTAAATCTTCATCAGCACATTCCATAACCATTCGGATGCTTGGGAGAGTTGCGGCATTACGGGAGTTATTTAAAGCTAGACTAGGGAATTGTTCTTCGTCTGATTATTCATCTGGAGAGTTGACGAGAAACAGTGAGCTTCATATAAAGGAAGAAGTCATCATCAATTCTGATACTGAAATTCAGGCAGATGAGAACAATCATGATAATTCAGTTGGAGAAGTAGATCAAACGCAATCAGAACATGCATGCCTTGTTACTCTAAATGATGCTGATGATGAGTTCTATGATGTTCCGGAGCCGTCAGACTGTGACGAGTCAGAAAATGGATGGATGACTGAATGTAGTCAACAGAAGTCTCAGGACATTCGTCATCAGAAGTTATCAACTGCTGCCAACTTTGTGAAAAGATTGCATGATCTTGCAGTTCAGAAGAGGGGTTATGTTGACTTGCAAGAGATGGTCAGGGAGGACAGTATCACATGCTCATATGGATCCACTCTTCCACAAGATCCTACTTGTACATTACCATGTAGTTTGACAGAAACAGATCCTTATACTTTCCTGATACGTGGAGAAAATTATCTTGAAGACCGCCAGAAGGTTAAAGCAAAGGGAACCTTGATGAAAATGGTTGCTGCAGATTGGGTGAGATCTGACAAAAGGGAAGATGACCTTGGTGGCCGTCCTGGGAGCATTGCGCAGAAATATGCTGCACAGGGAGGACCCGAGTTCTTTTTCATTGTAAACATTCAGGTTCCAGGTTCTACTACATATAGTCTAGCACTATACTATATGATGAATACTCCTGTGGAAGATGCTCCTTTGCTAGAGAGTTTTATCAAGGGTGATGATGCCTTCAGAAATTCCAGATTTAAACTTATACCATACATATCTAAGGGTTCATGGATAGTAAAGCAGAGTGTGGGAAAGAAGGCATGCCTAGTTGGTCAAGCACTGGAAATCAATTATTTCCAGGGAAGTAACTATTTGGAGCTTGGAGTTGATATTGGATCATCAACTGTTGCAAGAGGTGTTGTGAGTCTTGTCCTTGGGTACCTCAACCATCTGGTTATAGAGATGGCATTTTTAATACAGGGAAACACACGTGAAGAGCTCCCTGAATTTCTTCTTGGAACTTGCCGCCTTAACCATCTGGATGCCTCTAAAGCAGTTTGTCTGACGCTGTGA
>Glyma12g29750.1 sequence type=predicted peptide gene model=Glyma12g29750 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MASSGAATAALQSDASSRMEGWLYLIRFNRIGLQFSRKRYFVLDGNLLRSFKSVPVSNNQDPVRSAIVDSCIRVMDNGRESVNRKVFFIFTLYNTSNHNDQLKFGASRPEEAARWIQSFHEASLRGAPDGGDDAVGCSKRRWQSFRLSGSSSSISHPNSVDWTLSSADVIAPSPWTIFGCQNGLRLFKEAKDRDSNGKKWDDHPAIMAVGVVDGTSEAIFQTLMSLGPSRSEWDFCFYKGNVVEHLDGHTDIIHKQLFSDWLPWGMKRRDLLLRRYWRREDDGTYVILYHSVFHKKCPPQKGYVRACLKSGGYVISPVNKGKQSVVKHMLAIDWKCWRSYLKSSSAHSITIRMLGRVAALRELFKARLGNCSSSDYSSGELTRNSELHIKEEVIINSDTEIQADENNHDNSVGEVDQTQSEHACLVTLNDADDEFYDVPEPSDCDESENGWMTECSQQKSQDIRHQKLSTAANFVKRLHDLAVQKRGYVDLQEMVREDSITCSYGSTLPQDPTCTLPCSLTETDPYTFLIRGENYLEDRQKVKAKGTLMKMVAADWVRSDKREDDLGGRPGSIAQKYAAQGGPEFFFIVNIQVPGSTTYSLALYYMMNTPVEDAPLLESFIKGDDAFRNSRFKLIPYISKGSWIVKQSVGKKACLVGQALEINYFQGSNYLELGVDIGSSTVARGVVSLVLGYLNHLVIEMAFLIQGNTREELPEFLLGTCRLNHLDASKAVCLTL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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