Glyma12g29660 - SoyBase

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Report for Sequence Feature Glyma12g29660

Feature Type:	gene_model
Chromosome:	Gm12
Start:	33090377
stop:	33096520
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma12g29660

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G28470	AT	Annotation by Michelle Graham. TAIR10: beta-galactosidase 8 \| chr2:12169047-12173164 REVERSE LENGTH=852	SoyBase	E_val: 0	ISS
GO:0005975	GO-bp	Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0005618	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cell wall	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0004553	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds	SoyBase	N/A	ISS
GO:0004565	GO-mf	Annotation by Michelle Graham. GO Molecular Function: beta-galactosidase activity	SoyBase	N/A	ISS
GO:0030246	GO-mf	Annotation by Michelle Graham. GO Molecular Function: carbohydrate binding	SoyBase	N/A	ISS
GO:0043169	GO-mf	Annotation by Michelle Graham. GO Molecular Function: cation binding	SoyBase	N/A	ISS
KOG0496	KOG	Beta-galactosidase	JGI		ISS
PTHR23421	Panther	BETA-GALACTOSIDASE RELATED	JGI		ISS
PTHR23421:SF31	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF01301	PFAM	Glycosyl hydrolases family 35	JGI		ISS
PF02140	PFAM	Galactose binding lectin domain	JGI		ISS
PF02837	PFAM	Glycosyl hydrolases family 2, sugar binding domain	JGI		ISS
UniRef100_I1LTJ5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Beta-galactosidase n=2 Tax=Glycine max RepID=I1LTJ5_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_I1LTJ5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Beta-galactosidase n=2 Tax=Glycine max RepID=I1LTJ5_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma12g29660

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma12g29660

Paralog	Evidence	Comments
Glyma13g40200	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma12g29660 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.12g173700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma12g29660

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma12g29660

Limit To All Plant Sequences

>Glyma12g29660.1   sequence type=CDS   gene model=Glyma12g29660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGACCGGCACAGATTGTGTTGGTTCTGTTTTGGTTGCTCTGCATTCACACTCCCAAGTTGTTCTGCGCCAATGTAGAGTATGATCACAGAGCATTGGTCATCGACGGCAAGCGCAGGGTCTTGATCTCTGGCTCCATTCATTACCCTCGTAGTACTCCAGAGATGTGGCCAGACCTTATTCAGAAATCCAAAGATGGAGGGTTGGATGTGATTGAGACTTATGTTTTCTGGAACTTACACGAACCAGTTCGAGGCCAGTATGATTTTGATGGGAGGAAGGACTTGGTGAAATTTGTGAAGACAGTGGCTGCAGCTGGTCTCTATGTCCATCTCCGCATTGGTCCGTACGTGTGTGCTGAATGGAACTATGGTGGTTTCCCTGTTTGGCTGCACTTCATTCCGGGAATCAAGTTCCGAACTGACAATGAACCTTTCAAGGCAGAAATGAAGAGATTCACTGCCAAAATTGTGGATATGATCAAGCAAGAGAAGCTATATGCCTCCCAAGGAGGACCTGTTATTTTATCTCAGATTGAAAATGAGTATGGAAACATTGATACGGCCTACGGTGCTGCGGGTAAATCCTACATTAAGTGGGCAGCAACTATGGCTACATCTCTTGATACAGGGGTTCCATGGGTCATGTGTCTGCAAGCAGATGCTCCTGATCCAATTATTAATACATGGAATGGATTTTACGGCGATGAATTTACACCAAACTCTAACACAAAACCAAAAATGTGGACTGAGAATTGGAGTGGATGGTTTCTTGTGTTCGGTGGTGCTGTTCCTTACCGACCTGTGGAAGATCTTGCATTTGCCGTGGCACGCTTTTTCCAGCGAGGAGGAACATTTCAAAATTATTATATGTACCATGGAGGAACCAACTTTGACCGAGCTTCTGGTGGACCTTTCATTGCTACAAGTTATGATTATGATGCACCAATTGACGAGTATGGAATTATTAGACAGCCTAAGTGGGGCCACCTTAAAGAAGTGCACAAGGCCATAAAGCTTTGTGAAGAAGCATTGATAGCTACTGATCCAACAATTACATCCCTTGGTCCAAACCTAGAGGCTGCAGTTTACAAGACAGGATCTGTATGTGCGGCCTTCCTTGCTAACGTAGGCACCAAATCTGATGTAACAGTAAACTTCAGTGGCAATTCATATCACTTGCCTGCATGGTCTGTGAGCATCTTACCAGACTGCAAGAGTGTAGTGCTTAATACTGCAAAGATTAATTCTGCATCTGCAATTTCAAGCTTTACAACTGAATCTTCAAAAGAAGATATTGGTTCTTCAGAAGCTTCTAGTACAGGATGGAGTTGGATTAGTGAACCAGTGGGTATTTCGAAGACCGATTCATTCTCACAAACTGGATTATTGGAGCAAATAAATACAACAGCTGATAAAAGTGATTACTTGTGGTACTCATTAAGCATTGATTATAAGGCTGATGCTAGTTCTCAAACTGTCCTTCACATTGAATCACTTGGTCATGCCCTTCATGCCTTTATTAATGGGAAGCTTGCAGGGAGTCAACCAGGCAACAGTGGCAAATATAAGTTCACTGTGGACATCCCTGTCACACTAGTCGCTGGAAAGAACACAATTGATCTCTTGAGTTTAACTGTGGGACTTCAGAACTATGGAGCCTTTTTTGACACATGGGGAGTGGGGATCACTGGTCCAGTGATATTGAAAGGTTTTGCAAATGGCAACACGCTTGATCTCTCCTCCCAGAAGTGGACCTATCAGGTTGGCCTCCAAGGGGAAGATTTGGGTCTGTCTAGTGGGAGTTCGGGACAGTGGAATTTGCAATCTACCTTCCCTAAGAACCAACCATTGACTTGGTACAAGACAACTTTTTCTGCTCCATCCGGCAGTGATCCAGTTGCAATTGACTTCACGGGGATGGGAAAAGGCGAGGCTTGGGTTAATGGGCAACGCATCGGGCGATACTGGCCTACATATGTCGCTTCAGATGCTAGTTGCACGGACTCATGCAATTATAGAGGACCTTACAGTGCATCCAAATGTCGCAAGAATTGTGAAAAGCCATCACAGACACTATACCATGTACCGCGATCGTGGCTGAAACCAAGTGGCAACATTCTTGTATTGTTTGAGGAAAGGGGAGGTGATCCAACACAAATATCTTTTGTCACAAAACAGACAGAAAGTTTGTGTGCGCATGTATCCGATTCTCACCCACCACCTGTAGACTTGTGGAACTCAGAAACAGAATCAGGAAGAAAAGTAGGTCCTGTACTATCACTCACCTGCCCTCATGATAACCAAGTCATCTCTTCCATTAAATTTGCAAGCTATGGAACACCCCTTGGAACCTGTGGTAACTTCTACCATGGACGATGCAGCAGCAACAAGGCTCTATCTATTGTGCAGAAGGCCTGCATTGGATCAAGCAGTTGTAGTGTTGGAGTATCAAGTGACACATTCGGAGACCCTTGTAGAGGAATGGCAAAGAGTTTAGCAGTTGAAGCTACTTGTGCATAG

Predicted protein sequences of Glyma12g29660

Limit To All Plant Sequences

>Glyma12g29660.1   sequence type=predicted peptide   gene model=Glyma12g29660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRPAQIVLVLFWLLCIHTPKLFCANVEYDHRALVIDGKRRVLISGSIHYPRSTPEMWPDLIQKSKDGGLDVIETYVFWNLHEPVRGQYDFDGRKDLVKFVKTVAAAGLYVHLRIGPYVCAEWNYGGFPVWLHFIPGIKFRTDNEPFKAEMKRFTAKIVDMIKQEKLYASQGGPVILSQIENEYGNIDTAYGAAGKSYIKWAATMATSLDTGVPWVMCLQADAPDPIINTWNGFYGDEFTPNSNTKPKMWTENWSGWFLVFGGAVPYRPVEDLAFAVARFFQRGGTFQNYYMYHGGTNFDRASGGPFIATSYDYDAPIDEYGIIRQPKWGHLKEVHKAIKLCEEALIATDPTITSLGPNLEAAVYKTGSVCAAFLANVGTKSDVTVNFSGNSYHLPAWSVSILPDCKSVVLNTAKINSASAISSFTTESSKEDIGSSEASSTGWSWISEPVGISKTDSFSQTGLLEQINTTADKSDYLWYSLSIDYKADASSQTVLHIESLGHALHAFINGKLAGSQPGNSGKYKFTVDIPVTLVAGKNTIDLLSLTVGLQNYGAFFDTWGVGITGPVILKGFANGNTLDLSSQKWTYQVGLQGEDLGLSSGSSGQWNLQSTFPKNQPLTWYKTTFSAPSGSDPVAIDFTGMGKGEAWVNGQRIGRYWPTYVASDASCTDSCNYRGPYSASKCRKNCEKPSQTLYHVPRSWLKPSGNILVLFEERGGDPTQISFVTKQTESLCAHVSDSHPPPVDLWNSETESGRKVGPVLSLTCPHDNQVISSIKFASYGTPLGTCGNFYHGRCSSNKALSIVQKACIGSSSCSVGVSSDTFGDPCRGMAKSLAVEATCA*

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