Glyma12g29640 - SoyBase

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Report for Sequence Feature Glyma12g29640

Feature Type:	gene_model
Chromosome:	Gm12
Start:	33082730
stop:	33087480
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma12g29640

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G45240	AT	Annotation by Michelle Graham. TAIR10: geminivirus rep interacting kinase 1 \| chr3:16570774-16572902 REVERSE LENGTH=396	SoyBase	E_val: 0	ISS
GO:0006468	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein phosphorylation	SoyBase	N/A	ISS
GO:0009615	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to virus	SoyBase	N/A	ISS
GO:0046777	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein autophosphorylation	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0004674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0016301	GO-mf	Annotation by Michelle Graham. GO Molecular Function: kinase activity	SoyBase	N/A	ISS
KOG0583	KOG	Serine/threonine protein kinase	JGI		ISS
PTHR24347	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24347:SF40	Panther		JGI		ISS
PF00069	PFAM	Protein kinase domain	JGI		ISS
UniRef100_G7IRQ5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Calcium/calmodulin-dependent protein kinase kinase n=1 Tax=Medicago truncatula RepID=G7IRQ5_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1LTJ1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LTJ1_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma12g29640

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma12g29640

Paralog	Evidence	Comments
Glyma13g40190	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma12g29640 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.12g173600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma12g29640

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma12g29640

Limit To All Plant Sequences

>Glyma12g29640.1   sequence type=CDS   gene model=Glyma12g29640   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAGATTATAAGAGTTTTTCATTTTCCAAAATGATGGGCTGCTGTGGTTGCTTTGGATTTGTCCAAAAACCAAGACCGCGTCGGGCTAAACGTAGCATCAGTAATCTTCTCTCCCAGGGGCTATTATTGGATGGAGAAACTGAAGGTGAAGAGACATATAGTGGTGATGTTACTAGTAACTGCACCAGTGGAGATGATAATGAGGTGCAAGCTGTACGCAACCGTTCAGAGGATATTTTGAACTTCAGAGCTGAGAATGGCATGGTTTGCAGGCCGTTTCCTGTTAAGGAGACTTGCAAACTTGATCGCTCAGAGGATGAAAATGGGAACAAGATGATAAATGAATATGTTCGAGAGTATAAAATTGGTTGCGGAAGCTATGGCAAAGTGGCTCTTTATCGAAGTAGTGTTGATGGAAAGCATTATGCAATTAAGTCCTTTCACAAGTCTCACTTACAAAAGCTTCGAGTTGCACCATCTGAGACTGCCATGACTGATGTTCTACGTGAGGTATTGATTATGAAAATGGTGGAACATCCTAATATAGTCAATCTCATTGAGGTGATTGATGATCCAGAGTCGGATGACTTCTACATGGTACTTGAATATGTGGAAAGCAAATGGGTGTGCGAGGGTACAGGTCATCCTTGTGCATTAGGTGAAGAGACTGCTAGGAAATACTTGCGTGATATAGTCTCAGGATTAACATATCTCCATGCTCATAATATAGTGCATGGGGATATAAAACCTGATAATCTGTTGATTACTCGTCATGGCACTGTAAAAATAGGGGATTTCAGTGTCAGCCAGGCATTTGAGGATGGCAATGACGAACTTCGTCGATCACCTGGCACTCCAGTTTTCACTGCACCAGAATGTTGTTTAGGTCTTACTTATCATGGTAAAGCTTCTGACACGTGGGCAGTAGGAGTTACTTTGTACTGTATGATTTTGGGTGAATACCCATTTCTTGGAGACACACTTCAAGACACATATGACAAAATAGTCAATGATCCTTTAGTTCTGCCAGAGGACATTAACCCCCAGTTAAAGAATTTAATAGAAGGATTACTATGCAAAGACCCAGAACTAAGGATGACATTGGGCGATGTTGCTGAGCATATCTGGGTTATTGGAGACGATGGGCCAATTCCCGGGTACTTATGTTGGTGCAAACGTAAGAGCATGGTTACTGAAGATTCTGATGGGAGCGATATACTTGATTGA

Predicted protein sequences of Glyma12g29640

Limit To All Plant Sequences

>Glyma12g29640.1   sequence type=predicted peptide   gene model=Glyma12g29640   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGDYKSFSFSKMMGCCGCFGFVQKPRPRRAKRSISNLLSQGLLLDGETEGEETYSGDVTSNCTSGDDNEVQAVRNRSEDILNFRAENGMVCRPFPVKETCKLDRSEDENGNKMINEYVREYKIGCGSYGKVALYRSSVDGKHYAIKSFHKSHLQKLRVAPSETAMTDVLREVLIMKMVEHPNIVNLIEVIDDPESDDFYMVLEYVESKWVCEGTGHPCALGEETARKYLRDIVSGLTYLHAHNIVHGDIKPDNLLITRHGTVKIGDFSVSQAFEDGNDELRRSPGTPVFTAPECCLGLTYHGKASDTWAVGVTLYCMILGEYPFLGDTLQDTYDKIVNDPLVLPEDINPQLKNLIEGLLCKDPELRMTLGDVAEHIWVIGDDGPIPGYLCWCKRKSMVTEDSDGSDILD*

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