Report for Sequence Feature Glyma12g29630
Feature Type: gene_model
Chromosome: Gm12
Start: 33070036
stop: 33072578
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma12g29630
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G60570 AT
Annotation by Michelle Graham. TAIR10: Galactose oxidase/kelch repeat superfamily protein | chr5:24348713-24349894 FORWARD LENGTH=393
SoyBase E_val: 0 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
PTHR24413 Panther
FAMILY NOT NAMED
JGI ISS
PTHR24413:SF218 Panther
JGI ISS
PF01344 PFAM
Kelch motif
JGI ISS
UniRef100_B9SWC2 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Ubiquitin-protein ligase, putative n=1 Tax=Ricinus communis RepID=B9SWC2_RICCO
SoyBase E_val: 0 ISS
UniRef100_I1LTJ0 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LTJ0_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma12g29630
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma12g29630
Paralog Evidence Comments
Glyma13g40180 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma12g29630 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.12g173500 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma12g29630
Coding sequences of Glyma12g29630
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma12g29630.1 sequence type=CDS gene model=Glyma12g29630 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGAATAGAGGGGAAGGAGCGAATGATGGTTTTTCTGGACCTGGACCAAATGATTCGCTTCTTCCTGGTCTTATTGATGATGTTGCCTTGAATTGTCTTGCTTGGGTTAGTGGATCCGATTATGCCGCACTATCATGTATCAATAAAAGGTTCAATAAACTGATCAATAGTGGGTATCTATATGGGTTGAGGAAACAATTGGGGGCTGTGGAGCATTTGGTGTATATGGTTTGTGATCCAAGAGGATGGGTGGCCTTTGACCCCAAGATAAACAGGTGGATGTCATTACCCAAGATACCTTGTGATGAGTGCTTTAACCATGCAGACAAGGAGTCCTTGGCCGTGGGCTGCGAACTGTTAGTCTTCGGTCGGGAACTGATGGAGTTTGCTATTTGGAAGTATAGCATGATTTGTCGTGGTTGGGTGAAGTGCCAGGAGATGAACCAGCCTCGGTGTTTGTTTGGATCTAGTAGTCTTGGATCGATTGCTATTGTTGCTGGGGGAAGTGATAAGTATGGAAATGTTCTAAAATCAGCTGAGTTGTATGACTCTTCAACAGGTATGTGGGAACTTTTACCAAACATGCACACATCGCGTAGATTGTGTTCTGGTTTTTTTATGGATGGCAAATTCTACGTGATTGGTGGAATGTCAAGTACAACTGTTTCATTAAGTTGTGGAGAGGAGTATGATCTCAAGACAAGGAGTTGGCGGAAAATAGAGGGGATGTATCCATATGTTAACGTGGGTGTTCAGGCACCTCCACTTGTGGCTGTTGTGGATAATCAGCTATATGCAGTTGAGCATCTGACTAACATGGTGAAAAAATATGACAAGGAAAAGAACACCTGGAATGAATTGGGGAGGCTTCCAGTCAGGGCGGATTCTTCTAATGGTTGGGGGTTGGCTTTCAAGGTTTGTGGAGAGCAACTTTTGGTTGTGGGTGGACAAAGGGGTCCAGAGGGTGAATCTATTGTGCTGAGTTCATGGTGTCCTAAGTCAGGGATCAGCAATGGCACCATAGATTGGCAGGTACTTGGCGTGAAGGAGCATGTCGGGGTGTTCGTGTATAATTGTGCTGTTATGGGTTGTTGA
Predicted protein sequences of Glyma12g29630
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma12g29630.1 sequence type=predicted peptide gene model=Glyma12g29630 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MNRGEGANDGFSGPGPNDSLLPGLIDDVALNCLAWVSGSDYAALSCINKRFNKLINSGYLYGLRKQLGAVEHLVYMVCDPRGWVAFDPKINRWMSLPKIPCDECFNHADKESLAVGCELLVFGRELMEFAIWKYSMICRGWVKCQEMNQPRCLFGSSSLGSIAIVAGGSDKYGNVLKSAELYDSSTGMWELLPNMHTSRRLCSGFFMDGKFYVIGGMSSTTVSLSCGEEYDLKTRSWRKIEGMYPYVNVGVQAPPLVAVVDNQLYAVEHLTNMVKKYDKEKNTWNELGRLPVRADSSNGWGLAFKVCGEQLLVVGGQRGPEGESIVLSSWCPKSGISNGTIDWQVLGVKEHVGVFVYNCAVMGC*