Glyma12g29600 - SoyBase

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Report for Sequence Feature Glyma12g29600

Feature Type:	gene_model
Chromosome:	Gm12
Start:	33032953
stop:	33039494
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma12g29600

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G60580	AT	Annotation by Michelle Graham. TAIR10: RING/U-box superfamily protein \| chr5:24354298-24356706 FORWARD LENGTH=487	SoyBase	E_val: 1.00E-150	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
KOG1609	KOG	Protein involved in mRNA turnover and stability	JGI		ISS
PTHR23012	Panther	MEMBRANE ASSOCIATED RING FINGER	JGI		ISS
PTHR23012:SF37	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00097	PFAM	Zinc finger, C3HC4 type (RING finger)	JGI		ISS
UniRef100_G7IRR0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Protein binding protein n=1 Tax=Medicago truncatula RepID=G7IRR0_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233C407	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233C407 related cluster n=1 Tax=unknown RepID=UPI000233C407	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma12g29600

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma12g29600

Paralog	Evidence	Comments
Glyma13g40150	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma12g29600 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.12g173300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma12g29600

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma12g29600

Limit To All Plant Sequences

>Glyma12g29600.3   sequence type=transcript   gene model=Glyma12g29600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TGATGAATACAAAAGTGAGTGCAAGTGCAAAATTTGGTACGTAAATGTATGAGGCGAGAGTCCAGAGCATAGTGGAGAAAAGAAGAGTGTGTGTGTGGGAGAGTGAGAGCAGGACAGCCTCCCACTTTGTTTCGTAAATGCTCAATTTTATCTCCGTTACCCAATTTAAGCTGTTTCAATTCACAAACACAACACGCACTAAGCAATAGCAAACTAGTACTATTCTCTTCTGGTTACTTCCAACTTGTTGCTTTGCTTCGTCACCAGAAAATGAGTGCTCATCAAAAAGAAAAACACAACGCACCTTCGTCCAAACCAACGGTTTCTCATTCACTTCACAAGGTTGATGATCCAATGAAGGTAACCGATGAAAATGAAACCTTGCGTGCTTCTAATAATCAATGGAAGCGACCGAATCTGCAGCTGGAAATACCGACCAGAACATCGGAAGAGTCTTCTCAGGATCTTGTAAGAATAAGGATGCCACTGACGCCAAGTCCAACTCCTAGTCAGAAGAAAGTGAATTTTCTTGCGACTTCTCGCTCTGTTGATGCTCCAAGGCCTACTTCTTCATCGACCAGAGCCAAATCATCCATGAGAAACATCTTACCGAAATTCGGCTTCCGGAATCGTGCACCATCGCCCGATGTTGAAAAGGTTGTTACTACTGCAGCTCAAGAAGGTTCCTTTTCTGGTCATCAAGAGAAGCCTTCAATCCCAAGATCAGTGTCTCTCACAAAGATGTTTACTCCTAAGATTAAGAGAACGTCTTCGTTGCCAGTGGAAGAACTTGGGCGTGCAAACGTAGAATCTGTTCTTTGTGGAACTCTTGGTGCTTCTCCATGTGGAAGAGAGACCCAGGGGATGATAGCTCGTTCTCGTTCAGTGCCTGTTAATACCAAAGAAAAAGGCATAAGGAGAATGGATTCGGTTTTCCGCATTATTCCATCCACTCCTCGCGTAATTGAAGTGAATGAAACAACAAAGGATACAGAAAATGGTGATGATGGTGAAGATATTGCTGAAGAGGAAGCCGTGTGCAGAATTTGTCTGGTTGATCTATGTGAAGGAGGTGAGACATTAAAGATGGAATGCAGCTGCAAGGGTGAACTTGCTCTGGCTCACCAAGAATGTGCTATTAAATGGTTTAGTATCAAGGGTAACAAGACCTGTGATGTGTGCAAGGATGAGGTTCGGAACCTCCCTGTCACTCTCTTATGGATCCGAAGTGTTCGAACTCAGAATACTAGAGCAAGGTCCGAGCAGGGAGATGATTTCAGGGCTTGGCAGGAACTCCCAGTGCTTGTCATTGTCAACATGCTTGCTTATTTCTGTTTCCTTGAGCAGCTGTTGGTTGGAAGAATGAGAACCAAGGCAATTTTCATCTCTCTTCCGTTTGCCTGTGCACTGGGTCTACTCTCCTCCGTAACATCATCAACCATGGGTACGTTCACTAAAGATACTCGATAAATATTGTCAAGATACTTGTCTGTGAAACTCATCACACTGAAAATGGCTATTGCTATTGGTTTGTATCATATTACACGATACTTTTAGAGAATTATTATTCATGATACTTTTTTTTTACTAATTTTGTTAATGCTTGGCTGGGTTTCACTAACATATGCAAATCCTAACTTCAATTTTGTTTTCCAGTGAAGAGCAGGTTCATCTGGATTTATGCATCTGTCCAATTTGTTTTGGTGGTCATATTCGCCCACATATTTTACCCCTTGGTAATAATATATTTTGATATAAGCTAAATTCTTATTACACAAATTTTCACATCACGCCAATATTGACAATGTTGTTTTGAGAAATATAGTCAAAGGAATCAGGATCAGCCATCGAGGGTTAGTTCAAATATTGGTAAGATGGGAATAGCTGTGACAAAAAATTGGTTCCA

Coding sequences of Glyma12g29600

Limit To All Plant Sequences

>Glyma12g29600.2   sequence type=CDS   gene model=Glyma12g29600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTGCTCATCAAAAAGAAAAACACAACGCACCTTCGTCCAAACCAACGGTTTCTCATTCACTTCACAAGGTTGATGATCCAATGAAGGTAACCGATGAAAATGAAACCTTGCGTGCTTCTAATAATCAATGGAAGCGACCGAATCTGCAGCTGGAAATACCGACCAGAACATCGGAAGAGTCTTCTCAGGATCTTGTAAGAATAAGGATGCCACTGACGCCAAGTCCAACTCCTAGTCAGAAGAAAGTGAATTTTCTTGCGACTTCTCGCTCTGTTGATGCTCCAAGGCCTACTTCTTCATCGACCAGAGCCAAATCATCCATGAGAAACATCTTACCGAAATTCGGCTTCCGGAATCGTGCACCATCGCCCGATGTTGAAAAGGTTGTTACTACTGCAGCTCAAGAAGGTTCCTTTTCTGGTCATCAAGAGAAGCCTTCAATCCCAAGATCAGTGTCTCTCACAAAGATGTTTACTCCTAAGATTAAGAGAACGTCTTCGTTGCCAGTGGAAGAACTTGGGCGTGCAAACGTAGAATCTGTTCTTTGTGGAACTCTTGGTGCTTCTCCATGTGGAAGAGAGACCCAGGGGATGATAGCTCGTTCTCGTTCAGTGCCTGTTAATACCAAAGAAAAAGGCATAAGGAGAATGGATTCGGTTTTCCGCATTATTCCATCCACTCCTCGCGTAATTGAAGTGAATGAAACAACAAAGGATACAGAAAATGGTGATGATGGTGAAGATATTGCTGAAGAGGAAGCCGTGTGCAGAATTTGTCTGGTTGATCTATGTGAAGGAGGTGAGACATTAAAGATGGAATGCAGCTGCAAGGGTGAACTTGCTCTGGCTCACCAAGAATGTGCTATTAAATGGTTTAGTATCAAGGGTAACAAGACCTGTGATGTGTGCAAGGATGAGGTTCGGAACCTCCCTGTCACTCTCTTATGGATCCGAAGTGTTCGAACTCAGAATACTAGAGCAAGGTCCGAGCAGGGAGATGATTTCAGGGCTTGGCAGGAACTCCCAGTGCTTGTCATTGTCAACATGCTTGCTTATTTCTGTTTCCTTGAGCAGCTGTTGGTTGGAAGAATGAGAACCAAGGCAATTTTCATCTCTCTTCCGTTTGCCTGTGCACTGGGTCTACTCTCCTCCGTAACATCATCAACCATGGTGAAGAGCAGGTTCATCTGGATTTATGCATCTGTCCAATTTGTTTTGGTGGTCATATTCGCCCACATATTTTACCCCTTGGTTGGTAAGCATGCGGTTTTGGCAATCCTTCTTGCAACGTTTGCTGGGTTTGGCGTGGTGATGAGTGGAAGTTCAATTCTTTTGGAGTCTTCTAGATGGAGAAGAAGATGGCAAGCTTTATCAGAGCTGCAGCGTGGTTCTTCAGCGATGACACAAGAAGGGATATCAAGTCAGAGCTGA

>Glyma12g29600.3   sequence type=CDS   gene model=Glyma12g29600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTGCTCATCAAAAAGAAAAACACAACGCACCTTCGTCCAAACCAACGGTTTCTCATTCACTTCACAAGGTTGATGATCCAATGAAGGTAACCGATGAAAATGAAACCTTGCGTGCTTCTAATAATCAATGGAAGCGACCGAATCTGCAGCTGGAAATACCGACCAGAACATCGGAAGAGTCTTCTCAGGATCTTGTAAGAATAAGGATGCCACTGACGCCAAGTCCAACTCCTAGTCAGAAGAAAGTGAATTTTCTTGCGACTTCTCGCTCTGTTGATGCTCCAAGGCCTACTTCTTCATCGACCAGAGCCAAATCATCCATGAGAAACATCTTACCGAAATTCGGCTTCCGGAATCGTGCACCATCGCCCGATGTTGAAAAGGTTGTTACTACTGCAGCTCAAGAAGGTTCCTTTTCTGGTCATCAAGAGAAGCCTTCAATCCCAAGATCAGTGTCTCTCACAAAGATGTTTACTCCTAAGATTAAGAGAACGTCTTCGTTGCCAGTGGAAGAACTTGGGCGTGCAAACGTAGAATCTGTTCTTTGTGGAACTCTTGGTGCTTCTCCATGTGGAAGAGAGACCCAGGGGATGATAGCTCGTTCTCGTTCAGTGCCTGTTAATACCAAAGAAAAAGGCATAAGGAGAATGGATTCGGTTTTCCGCATTATTCCATCCACTCCTCGCGTAATTGAAGTGAATGAAACAACAAAGGATACAGAAAATGGTGATGATGGTGAAGATATTGCTGAAGAGGAAGCCGTGTGCAGAATTTGTCTGGTTGATCTATGTGAAGGAGGTGAGACATTAAAGATGGAATGCAGCTGCAAGGGTGAACTTGCTCTGGCTCACCAAGAATGTGCTATTAAATGGTTTAGTATCAAGGGTAACAAGACCTGTGATGTGTGCAAGGATGAGGTTCGGAACCTCCCTGTCACTCTCTTATGGATCCGAAGTGTTCGAACTCAGAATACTAGAGCAAGGTCCGAGCAGGGAGATGATTTCAGGGCTTGGCAGGAACTCCCAGTGCTTGTCATTGTCAACATGCTTGCTTATTTCTGTTTCCTTGAGCAGCTGTTGGTTGGAAGAATGAGAACCAAGGCAATTTTCATCTCTCTTCCGTTTGCCTGTGCACTGGGTCTACTCTCCTCCGTAACATCATCAACCATGGGTACGTTCACTAAAGATACTCGATAA

Predicted protein sequences of Glyma12g29600

Limit To All Plant Sequences

>Glyma12g29600.2   sequence type=predicted peptide   gene model=Glyma12g29600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSAHQKEKHNAPSSKPTVSHSLHKVDDPMKVTDENETLRASNNQWKRPNLQLEIPTRTSEESSQDLVRIRMPLTPSPTPSQKKVNFLATSRSVDAPRPTSSSTRAKSSMRNILPKFGFRNRAPSPDVEKVVTTAAQEGSFSGHQEKPSIPRSVSLTKMFTPKIKRTSSLPVEELGRANVESVLCGTLGASPCGRETQGMIARSRSVPVNTKEKGIRRMDSVFRIIPSTPRVIEVNETTKDTENGDDGEDIAEEEAVCRICLVDLCEGGETLKMECSCKGELALAHQECAIKWFSIKGNKTCDVCKDEVRNLPVTLLWIRSVRTQNTRARSEQGDDFRAWQELPVLVIVNMLAYFCFLEQLLVGRMRTKAIFISLPFACALGLLSSVTSSTMVKSRFIWIYASVQFVLVVIFAHIFYPLVGKHAVLAILLATFAGFGVVMSGSSILLESSRWRRRWQALSELQRGSSAMTQEGISSQS*

>Glyma12g29600.3   sequence type=predicted peptide   gene model=Glyma12g29600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSAHQKEKHNAPSSKPTVSHSLHKVDDPMKVTDENETLRASNNQWKRPNLQLEIPTRTSEESSQDLVRIRMPLTPSPTPSQKKVNFLATSRSVDAPRPTSSSTRAKSSMRNILPKFGFRNRAPSPDVEKVVTTAAQEGSFSGHQEKPSIPRSVSLTKMFTPKIKRTSSLPVEELGRANVESVLCGTLGASPCGRETQGMIARSRSVPVNTKEKGIRRMDSVFRIIPSTPRVIEVNETTKDTENGDDGEDIAEEEAVCRICLVDLCEGGETLKMECSCKGELALAHQECAIKWFSIKGNKTCDVCKDEVRNLPVTLLWIRSVRTQNTRARSEQGDDFRAWQELPVLVIVNMLAYFCFLEQLLVGRMRTKAIFISLPFACALGLLSSVTSSTMGTFTKDTR*

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