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Report for Sequence Feature Glyma12g29540
Feature Type: gene_model
Chromosome: Gm12
Start: 32975916
stop: 32980255
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma12g29540
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G26700 AT
Annotation by Michelle Graham. TAIR10: Protein kinase superfamily protein | chr3:9810669-9812356 FORWARD LENGTH=380
SoyBase E_val: 1.00E-77 ISS
GO:0006468 GO-bp
Annotation by Michelle Graham. GO Biological Process: protein phosphorylation
SoyBase N/A ISS
GO:0005886 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane
SoyBase N/A ISS
GO:0004672 GO-mf
Annotation by Michelle Graham. GO Molecular Function: protein kinase activity
SoyBase N/A ISS
GO:0004674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity
SoyBase N/A ISS
GO:0004713 GO-mf
Annotation by Michelle Graham. GO Molecular Function: protein tyrosine kinase activity
SoyBase N/A ISS
GO:0005524 GO-mf
Annotation by Michelle Graham. GO Molecular Function: ATP binding
SoyBase N/A ISS
GO:0016301 GO-mf
Annotation by Michelle Graham. GO Molecular Function: kinase activity
SoyBase N/A ISS
GO:0016772 GO-mf
Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups
SoyBase N/A ISS
KOG1187
KOG
Serine/threonine protein kinase
JGI ISS
PTHR24420 Panther
FAMILY NOT NAMED
JGI ISS
PTHR24420:SF451 Panther
SUBFAMILY NOT NAMED
JGI ISS
PF07714 PFAM
Protein tyrosine kinase
JGI ISS
UniRef100_G7IRR8 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Receptor-like protein kinase ANXUR2 n=1 Tax=Medicago truncatula RepID=G7IRR8_MEDTR
SoyBase E_val: 0 ISS
UniRef100_I1M4K7 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M4K7_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma12g29540
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma12g29540
Paralog Evidence Comments
Glyma13g40120 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma12g29540 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.12g172700 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma12g29540
Transcripts of Glyma12g29540
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma12g29540.3 sequence type=transcript gene model=Glyma12g29540 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
AAGACAACCTGTTTAAAGCGTTTTGCAGCTTTTCTTAGCTGGATAGTATACTTATAGTCAACCAAGACCACTGTTTGGATTTTCTGGAAGCTAATGCTAGAGACTAGAGTCTTAGTCTTACACTAACCTTCTTTTTCCAATCACTTTCACAATTTACTTCTCTTACTACTTCCACATCTCCTTGGTAAATATGTAACTTACTCTAGAAGCATGCAAAGTGTGAGTTCAATTCTTTCTCTATTTTGACCGCTATATAAATCAGTGTACTGTGTCTAATCCATTTCCCATTATGGCACTTCATTACATTTCTTGCTGAGGCTTTGTTCACTTTCAAGGGTTCTATTGGAGGTCCACAACAATTAGGATGCAGCATTGTGAAATATCCATGTCAAATGCAATGGCCTTGTCTTGACTGCTATAAACTAAAAGATCCAGGTGCTTTTTTCTCAAAGTCTCTGTGGAATAACAGCAAAGATAGATGGGAATAACGACGTTCCAACACTTACACCTCTTCAAGAAACTCAAGTTAGAAAACCAGGAGGAACAAGGGCTGCTGCCATAGTTGGTATTCTTGTTGCTGCCTTAGTCGTCATTGTCATTTTGGTGACTGTCTGTATCTGCTTGATGCGTGTTAAAAGATTTATGAGGCAAACATCTGAGGCTGCTTCTTCTATGCCATCTCCCACTGTTGAGATGGGAAGAGTCAACAACACTCAGAATGTTAATGCTTTCCCTCCACATTATACGCTGAACACAAGACAGTTAACAATTTTGGAACTAGAACAAGCTACACGAAATTTCAGTCATAGTAATATTATTAGTGAAGGTGGATTTGGTTTTGTATACAAGGGCTTGCTTCAAGATGGATCCATTGTGGCTATAAAAAGGCGTCTATTTGCTCTGACACAGGATTTCGTCCTTGAGGTGAATCAGATAGCTCATATTCACCACACCCATCTTGTGAAGCTCATAGGCTATTACGAAGATAGCTATCAACAATTACTTGTATATGAATATCTCCCTAACGGCAATGTAGGGAGTCACTTATATGACAGTGAAGGTTTACCTATTGGAAGGTTAGACTTGTGGCGAAGGATATCTATTGCTTTAGGCGCGTCCAAAGGTGTGGAACATCTTCATAGTTTGGTCCCTCCTTTGGTTCACACAAATTTTAGAACTAGCAATGTTCTGTTAGATGAAAATTACACGGCCAAGGTTGCTGTTTATGGATTCTGCAAATTGCAAACACAAGTTGATAATGCTGGCTCATCTTCACATGTAGACTGCTTTCTAGACCCAGAGTTGAGCTTTCCACAAAACTATTCGGAGAAGAGTGATGTACACAGTTTCGGGGTCTTCTTACTAGAGTTGATTAGTGGTTGTGAAGCACACCGCAAAAGCTTGTCAAACCCAGATGAAAACATAGTGTTTAAGGCAAAAAATAGCGTTGACTTGGACAACTTTGTTGACATAACGCTGGGAGAGCAAGAAAAGCATGGTGCTAGACGAATGATGAAATTGGCATTGCTATGTGTGGATGTGACTAGTAGAAGACCATCAATGGCGCAAATTGTGCAAGAGTTGGAGCAGATTCAAAGAGAAATTGCTCCAGTGTATTCTCAATTCAACGAGGAGATTGGTGCCGTGACTCTAGGGAGTGAGCTCTTTCAGTAAGCCTTGCGAAATGCGAATTGCGATGTATTCTCACTTTAGAAACCATTTTTTGTGTTTGTTGCACAACTATTATTGTTATGGTAATTGACTTATTGTAGGTATAATTGGTCCTGGAAGGATATTATTCATTTGTAATTACTTCAAAGTAAATAAAATGTTGAAAATAAGTAGATTTAGATAGGATAATTATAAATTT
>Glyma12g29540.4 sequence type=transcript gene model=Glyma12g29540 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
AATGTGGGAGACCCAATGATTTCGCTAGTTACCAGAACTGAATATGCATTTATTAAGTGCAGCTGAGGCTTTGTTCACTTTCAAGGGTTCTATTGGAGGTCCACAACAATTAGGATGCAGCATTGTGAAATATCCATGTCAAATGCAATGGCCTTGTCTTGACTGCTATAAACTAAAAGATCCAGGTGCTTTTTTCTCAAAGTCTCTGTGGAATAACAGCAAAGATAGATGGGAATAACGACGTTCCAACACTTACACCTCTTCAAGAAACTCAAGTTAGAAAACCAGGAGGAACAAGGGCTGCTGCCATAGTTGGTATTCTTGTTGCTGCCTTAGTCGTCATTGTCATTTTGGTGACTGTCTGTATCTGCTTGATGCGTGTTAAAAGATTTATGAGGCAAACATCTGAGGCTGCTTCTTCTATGCCATCTCCCACTGTTGAGATGGGAAGAGTCAACAACACTCAGAATGTTAATGCTTTCCCTCCACATTATACGCTGAACACAAGACAGTTAACAATTTTGGAACTAGAACAAGCTACACGAAATTTCAGTCATAGTAATATTATTAGTGAAGGTGGATTTGGTTTTGTATACAAGGGCTTGCTTCAAGATGGATCCATTGTGGCTATAAAAAGGCGTCTATTTGCTCTGACACAGGATTTCGTCCTTGAGGTGAATCAGATAGCTCATATTCACCACACCCATCTTGTGAAGCTCATAGGCTATTACGAAGATAGCTATCAACAATTACTTGTATATGAATATCTCCCTAACGGCAATGTAGGGAGTCACTTATATGACAGTGAAGGTTTACCTATTGGAAGGTTAGACTTGTGGCGAAGGATATCTATTGCTTTAGGCGCGTCCAAAGGTGTGGAACATCTTCATAGTTTGGTCCCTCCTTTGGTTCACACAAATTTTAGAACTAGCAATGTTCTGTTAGATGAAAATTACACGGCCAAGGTTGCTGTTTATGGATTCTGCAAATTGCAAACACAAGTTGATAATGCTGGCTCATCTTCACATGTAGACTGCTTTCTAGACCCAGAGTTGAGCTTTCCACAAAACTATTCGGAGAAGAGTGATGTACACAGTTTCGGGGTCTTCTTACTAGAGTTGATTAGTGGTTGTGAAGCACACCGCAAAAGCTTGTCAAACCCAGATGAAAACATAGTGTTTAAGGCAAAAAATAGCGTTGACTTGGACAACTTTGTTGACATAACGCTGGGAGAGCAAGAAAAGCATGGTGCTAGACGAATGATGAAATTGGCATTGCTATGTGTGGATGTGACTAGTAGAAGACCATCAATGGCGCAAATTGTGCAAGAGTTGGAGCAGATTCAAAGAGAAATTGCTCCAGTGTATTCTCAATTCAACGAGGAGATTGGTGCCGTGACTCTAGGGAGTGAGCTCTTTCAGTAAGCCTTGCGAAATGCGAATTGCGATGTATTCTCACTTTAGAAACCATTTTTTGTGTTTGTTGCACAACTATTATTGTTATGGTAATTGACTTATTGTAGGTATAATTGGTCCTGGAAGGATATTATTCATTTGTAATTACTTCAAAGTAAATAAAATGTTGAAAATAAGTAGATTTAGATAGGATAATTATAAATTT
Coding sequences of Glyma12g29540
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma12g29540.2 sequence type=CDS gene model=Glyma12g29540 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGCATTTATTAAGTGCAGCTGAGGCTTTGTTCACTTTCAAGGGTTCTATTGGAGGTCCACAACAATTAGGATGCAGCATTGTGAAATATCCATGTCAAATGCAATGGCCTTGTCTTGACTGCTATAAACTAAAAGATCCAGGTGGAATAACAGCAAAGATAGATGGGAATAACGACGTTCCAACACTTACACCTCTTCAAGAAACTCAAGTTAGAAAACCAGGAGGAACAAGGGCTGCTGCCATAGTTGGTATTCTTGTTGCTGCCTTAGTCGTCATTGTCATTTTGGTGACTGTCTGTATCTGCTTGATGCGTGTTAAAAGATTTATGAGGCAAACATCTGAGGCTGCTTCTTCTATGCCATCTCCCACTGTTGAGATGGGAAGAGTCAACAACACTCAGAATGTTAATGCTTTCCCTCCACATTATACGCTGAACACAAGACAGTTAACAATTTTGGAACTAGAACAAGCTACACGAAATTTCAGTCATAGTAATATTATTAGTGAAGGTGGATTTGGTTTTGTATACAAGGGCTTGCTTCAAGATGGATCCATTGTGGCTATAAAAAGGCGTCTATTTGCTCTGACACAGGATTTCGTCCTTGAGGTGAATCAGATAGCTCATATTCACCACACCCATCTTGTGAAGCTCATAGGCTATTACGAAGATAGCTATCAACAATTACTTGTATATGAATATCTCCCTAACGGCAATGTAGGGAGTCACTTATATGACAGTGAAGGTTTACCTATTGGAAGGTTAGACTTGTGGCGAAGGATATCTATTGCTTTAGGCGCGTCCAAAGGTGTGGAACATCTTCATAGTTTGGTCCCTCCTTTGGTTCACACAAATTTTAGAACTAGCAATGTTCTGTTAGATGAAAATTACACGGCCAAGGTTGCTGTTTATGGATTCTGCAAATTGCAAACACAAGTTGATAATGCTGGCTCATCTTCACATGTAGACTGCTTTCTAGACCCAGAGTTGAGCTTTCCACAAAACTATTCGGAGAAGAGTGATGTACACAGTTTCGGGGTCTTCTTACTAGAGTTGATTAGTGGTTGTGAAGCACACCGCAAAAGCTTGTCAAACCCAGATGAAAACATAGTGTTTAAGGCAAAAAATAGCGTTGACTTGGACAACTTTGTTGACATAACGCTGGGAGAGCAAGAAAAGCATGGTGCTAGACGAATGATGAAATTGGCATTGCTATGTGTGGATGTGACTAGTAGAAGACCATCAATGGCGCAAATTGTGCAAGAGTTGGAGCAGATTCAAAGAGAAATTGCTCCAGTGTATTCTCAATTCAACGAGGAGATTGGTGCCGTGACTCTAGGGAGTGAGCTCTTTCAGTAA
>Glyma12g29540.3 sequence type=CDS gene model=Glyma12g29540 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGCGTGTTAAAAGATTTATGAGGCAAACATCTGAGGCTGCTTCTTCTATGCCATCTCCCACTGTTGAGATGGGAAGAGTCAACAACACTCAGAATGTTAATGCTTTCCCTCCACATTATACGCTGAACACAAGACAGTTAACAATTTTGGAACTAGAACAAGCTACACGAAATTTCAGTCATAGTAATATTATTAGTGAAGGTGGATTTGGTTTTGTATACAAGGGCTTGCTTCAAGATGGATCCATTGTGGCTATAAAAAGGCGTCTATTTGCTCTGACACAGGATTTCGTCCTTGAGGTGAATCAGATAGCTCATATTCACCACACCCATCTTGTGAAGCTCATAGGCTATTACGAAGATAGCTATCAACAATTACTTGTATATGAATATCTCCCTAACGGCAATGTAGGGAGTCACTTATATGACAGTGAAGGTTTACCTATTGGAAGGTTAGACTTGTGGCGAAGGATATCTATTGCTTTAGGCGCGTCCAAAGGTGTGGAACATCTTCATAGTTTGGTCCCTCCTTTGGTTCACACAAATTTTAGAACTAGCAATGTTCTGTTAGATGAAAATTACACGGCCAAGGTTGCTGTTTATGGATTCTGCAAATTGCAAACACAAGTTGATAATGCTGGCTCATCTTCACATGTAGACTGCTTTCTAGACCCAGAGTTGAGCTTTCCACAAAACTATTCGGAGAAGAGTGATGTACACAGTTTCGGGGTCTTCTTACTAGAGTTGATTAGTGGTTGTGAAGCACACCGCAAAAGCTTGTCAAACCCAGATGAAAACATAGTGTTTAAGGCAAAAAATAGCGTTGACTTGGACAACTTTGTTGACATAACGCTGGGAGAGCAAGAAAAGCATGGTGCTAGACGAATGATGAAATTGGCATTGCTATGTGTGGATGTGACTAGTAGAAGACCATCAATGGCGCAAATTGTGCAAGAGTTGGAGCAGATTCAAAGAGAAATTGCTCCAGTGTATTCTCAATTCAACGAGGAGATTGGTGCCGTGACTCTAGGGAGTGAGCTCTTTCAGTAA
>Glyma12g29540.4 sequence type=CDS gene model=Glyma12g29540 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGCGTGTTAAAAGATTTATGAGGCAAACATCTGAGGCTGCTTCTTCTATGCCATCTCCCACTGTTGAGATGGGAAGAGTCAACAACACTCAGAATGTTAATGCTTTCCCTCCACATTATACGCTGAACACAAGACAGTTAACAATTTTGGAACTAGAACAAGCTACACGAAATTTCAGTCATAGTAATATTATTAGTGAAGGTGGATTTGGTTTTGTATACAAGGGCTTGCTTCAAGATGGATCCATTGTGGCTATAAAAAGGCGTCTATTTGCTCTGACACAGGATTTCGTCCTTGAGGTGAATCAGATAGCTCATATTCACCACACCCATCTTGTGAAGCTCATAGGCTATTACGAAGATAGCTATCAACAATTACTTGTATATGAATATCTCCCTAACGGCAATGTAGGGAGTCACTTATATGACAGTGAAGGTTTACCTATTGGAAGGTTAGACTTGTGGCGAAGGATATCTATTGCTTTAGGCGCGTCCAAAGGTGTGGAACATCTTCATAGTTTGGTCCCTCCTTTGGTTCACACAAATTTTAGAACTAGCAATGTTCTGTTAGATGAAAATTACACGGCCAAGGTTGCTGTTTATGGATTCTGCAAATTGCAAACACAAGTTGATAATGCTGGCTCATCTTCACATGTAGACTGCTTTCTAGACCCAGAGTTGAGCTTTCCACAAAACTATTCGGAGAAGAGTGATGTACACAGTTTCGGGGTCTTCTTACTAGAGTTGATTAGTGGTTGTGAAGCACACCGCAAAAGCTTGTCAAACCCAGATGAAAACATAGTGTTTAAGGCAAAAAATAGCGTTGACTTGGACAACTTTGTTGACATAACGCTGGGAGAGCAAGAAAAGCATGGTGCTAGACGAATGATGAAATTGGCATTGCTATGTGTGGATGTGACTAGTAGAAGACCATCAATGGCGCAAATTGTGCAAGAGTTGGAGCAGATTCAAAGAGAAATTGCTCCAGTGTATTCTCAATTCAACGAGGAGATTGGTGCCGTGACTCTAGGGAGTGAGCTCTTTCAGTAA
Predicted protein sequences of Glyma12g29540
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma12g29540.2 sequence type=predicted peptide gene model=Glyma12g29540 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MHLLSAAEALFTFKGSIGGPQQLGCSIVKYPCQMQWPCLDCYKLKDPGGITAKIDGNNDVPTLTPLQETQVRKPGGTRAAAIVGILVAALVVIVILVTVCICLMRVKRFMRQTSEAASSMPSPTVEMGRVNNTQNVNAFPPHYTLNTRQLTILELEQATRNFSHSNIISEGGFGFVYKGLLQDGSIVAIKRRLFALTQDFVLEVNQIAHIHHTHLVKLIGYYEDSYQQLLVYEYLPNGNVGSHLYDSEGLPIGRLDLWRRISIALGASKGVEHLHSLVPPLVHTNFRTSNVLLDENYTAKVAVYGFCKLQTQVDNAGSSSHVDCFLDPELSFPQNYSEKSDVHSFGVFLLELISGCEAHRKSLSNPDENIVFKAKNSVDLDNFVDITLGEQEKHGARRMMKLALLCVDVTSRRPSMAQIVQELEQIQREIAPVYSQFNEEIGAVTLGSELFQ*
>Glyma12g29540.3 sequence type=predicted peptide gene model=Glyma12g29540 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MRVKRFMRQTSEAASSMPSPTVEMGRVNNTQNVNAFPPHYTLNTRQLTILELEQATRNFSHSNIISEGGFGFVYKGLLQDGSIVAIKRRLFALTQDFVLEVNQIAHIHHTHLVKLIGYYEDSYQQLLVYEYLPNGNVGSHLYDSEGLPIGRLDLWRRISIALGASKGVEHLHSLVPPLVHTNFRTSNVLLDENYTAKVAVYGFCKLQTQVDNAGSSSHVDCFLDPELSFPQNYSEKSDVHSFGVFLLELISGCEAHRKSLSNPDENIVFKAKNSVDLDNFVDITLGEQEKHGARRMMKLALLCVDVTSRRPSMAQIVQELEQIQREIAPVYSQFNEEIGAVTLGSELFQ*
>Glyma12g29540.4 sequence type=predicted peptide gene model=Glyma12g29540 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MRVKRFMRQTSEAASSMPSPTVEMGRVNNTQNVNAFPPHYTLNTRQLTILELEQATRNFSHSNIISEGGFGFVYKGLLQDGSIVAIKRRLFALTQDFVLEVNQIAHIHHTHLVKLIGYYEDSYQQLLVYEYLPNGNVGSHLYDSEGLPIGRLDLWRRISIALGASKGVEHLHSLVPPLVHTNFRTSNVLLDENYTAKVAVYGFCKLQTQVDNAGSSSHVDCFLDPELSFPQNYSEKSDVHSFGVFLLELISGCEAHRKSLSNPDENIVFKAKNSVDLDNFVDITLGEQEKHGARRMMKLALLCVDVTSRRPSMAQIVQELEQIQREIAPVYSQFNEEIGAVTLGSELFQ*