Glyma12g28970 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma12g28970

Feature Type:	gene_model
Chromosome:	Gm12
Start:	32362347
stop:	32365183
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma12g28970

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G58100	AT	Annotation by Michelle Graham. TAIR10: TCP family transcription factor \| chr1:21512680-21513885 REVERSE LENGTH=401	SoyBase	E_val: 8.00E-85	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0001047	GO-mf	Annotation by Michelle Graham. GO Molecular Function: core promoter binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
PTHR11584	Panther	SERINE/THREONINE PROTEIN KINASE	JGI		ISS
PTHR11584:SF275	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF03634	PFAM	TCP family transcription factor	JGI		ISS
UniRef100_G3BGV1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: TCP transcription factor 11 n=1 Tax=Solanum lycopersicum RepID=G3BGV1_SOLLC	SoyBase	E_val: 1.00E-131	ISS
UniRef100_I1LTE2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LTE2_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma12g28970

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma12g28970

Paralog	Evidence	Comments
Glyma16g00580	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma12g28970 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.12g168300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma12g28970

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma12g28970

Limit To All Plant Sequences

>Glyma12g28970.2   sequence type=CDS   gene model=Glyma12g28970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAACTATCAGATTTGCAAAACAAGAAGCAGAGCAGCAGCAGCAGCAGCACAGGTGCTACTCATCAACAACAACAACAACAACAACAATCCTCTTCTACCCATCTTGTTGTGCCTTCCCCTTCCAATTCTTCCGCATCCCTCATCGACGCCTCCTTAGCCATCGCCACCAGATCTGATGATTCGACCAAGAAGACCCAACAACCCTCCACCAACACCAAGCGATCCACCAAGGACAGGCACACCAAAGTCGACGGCCGCGGCCGCAGAATTCGAATGCCCGCCACCTGCGCCGCTAGGGTTTTCCAGTTGACAAGAGAATTGGGCCACAAGTCCGACGGCGAAACTATCGAATGGCTCCTCCAGCAGGCCGAGCCCGCCATCATCGCCGCCACCGGAACCGGAACCATCCCCGCCAATTTCTCCACCCTCAACGTCTCCTTACGCAGCAGCGGCTCCACGCTCTCGGCGCCGCCCTCCAAATCAGCCCCGCACACCTTTCATGGCGCCCTCGCACTCGCTCACCACCCTTACGACGAAGCCTTTCAACACCCCGCTCTTCTTGGCTTCCACCCTCACCATCACCAGCAGCAGCTTCTCTCCGCCGATCAAATCGCAGAAGCGCTTCCCAGCGCTGGCGGCGGTGACTCCGGCGGCAACTACCTTAGAAAGCGCTACCGAGAAGATCTCTTCAAAGACGATAACATCAACAATACCCAATCTCAGAACGATAGCGGTGATGCTGATGGTGATGCTGATGGTGATGGGTCTTCGCCTAAGTTACCCAAGGAAGCTGGGTCTGGGCTTCTTCGGCCCACCAATTTGCTTCCCGCAACAGCGATGTGGGCTAGTGGACCCCCTGGAAGCACAATTTGGATGCTTCCCGTAACCGCCGCGGCGGCTTCTTCTTCTTCTTCATCTTCTTCTGCTTCGTCTGCGGCAAGTTCGGAGAGTCAGATGTGGGCGTTTCCTCAGAGTGTGAGTGGTTTCATGCCGAGGTTCAACCTTCCGGTTCCGGGTGCGCTTGAATTCCAAGGCGCACGTGCGGGTTCTCTTCAATTGGGCCCCTCCATGTTAATGCCGCCGCCGCCGCTGCCGCCGCAACAGCAACAGCAGCCCTCTCAGCATCTGGGCCTTGCCATGTCCGACTCCAACTTGGGCATGTTGGCAGCCCTTAATGCTTACGCTAGGGCTGGTTTGAATATTAATTCAGACCATCATCATCATCATCATCATCATCATCATCATCAACATCAATCTCAACCTAGTGAGAGTGGAGAAGATGCTCCTAATAGCTCCCAATGA

Predicted protein sequences of Glyma12g28970

Limit To All Plant Sequences

>Glyma12g28970.2   sequence type=predicted peptide   gene model=Glyma12g28970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MELSDLQNKKQSSSSSSTGATHQQQQQQQQSSSTHLVVPSPSNSSASLIDASLAIATRSDDSTKKTQQPSTNTKRSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFSTLNVSLRSSGSTLSAPPSKSAPHTFHGALALAHHPYDEAFQHPALLGFHPHHHQQQLLSADQIAEALPSAGGGDSGGNYLRKRYREDLFKDDNINNTQSQNDSGDADGDADGDGSSPKLPKEAGSGLLRPTNLLPATAMWASGPPGSTIWMLPVTAAAASSSSSSSSASSAASSESQMWAFPQSVSGFMPRFNLPVPGALEFQGARAGSLQLGPSMLMPPPPLPPQQQQQPSQHLGLAMSDSNLGMLAALNAYARAGLNINSDHHHHHHHHHHHQHQSQPSESGEDAPNSSQ*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain