SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G40360 | AT | Annotation by Michelle Graham. TAIR10: Transducin/WD40 repeat-like superfamily protein | chr2:16853123-16856635 REVERSE LENGTH=753 | SoyBase | E_val: 0 | ISS |
| GO:0006364 | GO-bp | Annotation by Michelle Graham. GO Biological Process: rRNA processing | SoyBase | N/A | ISS |
| GO:0051604 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein maturation | SoyBase | N/A | ISS |
| GO:0051726 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of cell cycle | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| KOG0650 | KOG | WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis | JGI | ISS | |
| PTHR17605 | Panther | RIBOSOME BIOGENESIS PROTEIN BOP1 (BLOCK OF PROLIFERATION 1 PROTEIN) | JGI | ISS | |
| PF00400 | PFAM | WD domain, G-beta repeat | JGI | ISS | |
| PF08145 | PFAM | BOP1NT (NUC169) domain | JGI | ISS | |
| UniRef100_G7INL9 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Ribosome biogenesis protein bop1 n=1 Tax=Medicago truncatula RepID=G7INL9_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233D19D | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233D19D related cluster n=1 Tax=unknown RepID=UPI000233D19D | SoyBase | E_val: 0 | ISS |
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Glyma12g28910 not represented in the dataset |
Glyma12g28910 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma16g00541 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.12g167800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma12g28910.2 sequence type=transcript gene model=Glyma12g28910 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TGTTGATGATTGTTGGGCCTAGCAAACAAGCCGAAAGTATAAGAAATCAAATTGCGGCTGGGTGGGCAAGTAAAACCCTTTCCCTCCTCCAAACAAAACCCTAACTCTCCCTACCTTTGATTTTGAAGATGAAAGGGAAGAAGAACACCATGACCAAAAACGACGTTGAAGACGACGGAGCTCCGGTTCCTTCACCAACAGTATCCGATTCCGACTCTGATTACGAGGACTCTTCAGCAGATGACGACGACAAATCTTCTGACTCGCTGGATTCTCAATCTGAATCGGAATTAGAAGATGCTTCACCTGAGAATGGTGGCTCCGGCGATGTAGAATCTGCAGAAGATGAGGACACTGTCAATGATGAAGACGGTGGAAGTGAGAGCTCTGATCTCCATCAGGAAGGAGCTGAGAGTGATTCCTCCGAGGATGAGGTGGCTCCTCGAAACACCATTGGAGATGTGCCATTGAAGTGGTATGAGGATGAGCCTCATATTGGATACGACATCAAGGCAAAAAAGATTAAGAAAAAGGAAAAGCAAGACAAGTTGGATTCATTTCTTGCAAGTGTTGATGATTCTAAGAATTGGCGGAAGATCTATGATGAGTACAATGATGAGGTAGTTGAGTTGACAAAAGATGAAATCAAACTTGTCCGTAGACTGCTAAAGAATCGGGCACCCCATTCTGACTTTGATCCATATCCAGATGGTGTTGACTGGTTTAAATGGGAAGACGCCAAACATCCATTGTCTAATGCACCTGAACCAAAAAGAAGGTTTATTCCATCAAAGTGGGAAGCTAAAAAGGTTGTACAGTATGTTAGAGCAATCCGCCAGGGATTAATCACTTTTGACAAGCCAAAAGAGGAAGATGGTCCATATCTCTTGTGGGGAGATGATTCTGGTTCAACAGAAAGAGCAAATCATTTGGCTTACATTCCTGCCCCAAAGCAGAAGTTACCTGGCCATGATGAGTCATATAATCCTCCTCTAGAGTACATTCCAACCCAAGAAGAGGTCAATTCTTATCAATTGATGTTTGAGGAAGACCGCCCTAAGTTTATTCCTAAAAGGTTTGCATCTATGAGGAGCATTCCTGCATATGAGAATGCTATGAAAGACTGCTTTGAACGTTGTTTGGATTTGTATTTATGTCCTCGAGTTCGGAAAAAACGTCTCAATATCGATCCTGAATCTTTAAAGCCAAAGCTTCCAAGTCGAAAGGAGCTTAAGCCTTATCCCACAACATGCTATATCGAGTATAAAGGCCATGAAGATGCTGTTACATCAATTTCACTCGAAGCTTCAGGACAATGGATGGCTTCAGGTTCAAGTGATGGAACTGTCCGTATCTGGGAGGTTGAAACTGGCAGATGTCTTAGGCGGTGGGAGGTTGGTGAATCTGTTAGCTGTGTTGCTTGGAATCCTCTGCCCAATATTCATCTTCTGGCGGTTTCTGTGGGCCAAGATGTACTTCTACTTAACACTTGTTTGGGGGATGACGAAGAGCAGAAACAGATTAAGGAGCTTCTCTGGGTTGACTCATCTACAGCATTGGATGACTCTGGCAACCAAGCACCTAGTGTAAGCTGGCTTAAAGATGATAAACATATGGGTTTAAGGTTAAGGCACTTTAAGACTGTTACTGCTGTAGAATGGCACCGGAAAGGTGACTACTTTTCGACAGTGATGCCGGCAGGTGAATCAAGAGCAGTTCTGATACACCAGTTATCCAAAAAGCTTACGCAAAAACTTCCATTCAAATTACATGGACTTGCTGTTAGGTCAACCTTCCATCCATCCCGTTCCATCTTCTTTGTATGTACCAAAAAGAGTGTTCGTGTGTATGATTTATTGAAGACCAAGATCATAAAAAAGCTTGATACTGGGCTTCGTGAAGCTTCATCCATTGCAGTTCATCCTGGAGGTGATAATTTAATTGTCGGTAGCAAAGAGGGGAAGATGTGTTGGTTTGACATGGACCTTTCATCTAAACCGTATAAAATTCTTAAGTAAGTCTTAGTATTTATCTGCTAATTGAAAGCAATGTCAAACTCGTTACATTCTTTTGTGTCAGAGTGGGTTCTCTGCTCACTAATGCAGATTATACTATACAGTATGAGCTATAGACCTCTCTGAATGGAAGAGGAAATTATTTTCCTTAGGGCATAAACAATAAGAAGTTGATTGATGAAAAGAGAGACCTGTGGGAGGTTCTATATGTTTTGTTAAACTATTCCTTGTTATTTTTGTCATTTACCAATATTTTGTATGGTCAGAACACTCCAGTGGTCAGAACCTTACATATGTAGTCCTTTTTGAGACACCGACGACCTTGCTTTGATACCAGTTGATACAACTTGTACC
>Glyma12g28910.1 sequence type=CDS gene model=Glyma12g28910 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAAGGGAAGAAGAACACCATGACCAAAAACGACGTTGAAGACGACGGAGCTCCGGTTCCTTCACCAACAGTATCCGATTCCGACTCTGATTACGAGGACTCTTCAGCAGATGACGACGACAAATCTTCTGACTCGCTGGATTCTCAATCTGAATCGGAATTAGAAGATGCTTCACCTGAGAATGGTGGCTCCGGCGATGTAGAATCTGCAGAAGATGAGGACACTGTCAATGATGAAGACGGTGGAAGTGAGAGCTCTGATCTCCATCAGGAAGGAGCTGAGAGTGATTCCTCCGAGGATGAGGTGGCTCCTCGAAACACCATTGGAGATGTGCCATTGAAGTGGTATGAGGATGAGCCTCATATTGGATACGACATCAAGGCAAAAAAGATTAAGAAAAAGGAAAAGCAAGACAAGTTGGATTCATTTCTTGCAAGTGTTGATGATTCTAAGAATTGGCGGAAGATCTATGATGAGTACAATGATGAGGTAGTTGAGTTGACAAAAGATGAAATCAAACTTGTCCGTAGACTGCTAAAGAATCGGGCACCCCATTCTGACTTTGATCCATATCCAGATGGTGTTGACTGGTTTAAATGGGAAGACGCCAAACATCCATTGTCTAATGCACCTGAACCAAAAAGAAGGTTTATTCCATCAAAGTGGGAAGCTAAAAAGGTTGTACAGTATGTTAGAGCAATCCGCCAGGGATTAATCACTTTTGACAAGCCAAAAGAGGAAGATGGTCCATATCTCTTGTGGGGAGATGATTCTGGTTCAACAGAAAGAGCAAATCATTTGGCTTACATTCCTGCCCCAAAGCAGAAGTTACCTGGCCATGATGAGTCATATAATCCTCCTCTAGAGTACATTCCAACCCAAGAAGAGGTCAATTCTTATCAATTGATGTTTGAGGAAGACCGCCCTAAGTTTATTCCTAAAAGGTTTGCATCTATGAGGAGCATTCCTGCATATGAGAATGCTATGAAAGACTGCTTTGAACGTTGTTTGGATTTGTATTTATGTCCTCGAGTTCGGAAAAAACGTCTCAATATCGATCCTGAATCTTTAAAGCCAAAGCTTCCAAGTCGAAAGGAGCTTAAGCCTTATCCCACAACATGCTATATCGAGTATAAAGGCCATGAAGATGCTGTTACATCAATTTCACTCGAAGCTTCAGGACAATGGATGGCTTCAGGTTCAAGTGATGGAACTGTCCGTATCTGGGAGGTTGAAACTGGCAGATGTCTTAGGCGGTGGGAGGTTGGTGAATCTGTTAGCTGTGTTGCTTGGAATCCTCTGCCCAATATTCATCTTCTGGCGGTTTCTGTGGGCCAAGATGTACTTCTACTTAACACTTGTTTGGGGGATGACGAAGAGCAGAAACAGATTAAGGAGCTTCTCTGGGTTGACTCATCTACAGCATTGGATGACTCTGGCAACCAAGCACCTAGTGTAAGCTGGCTTAAAGATGATAAACATATGGGTTTAAGGTTAAGGCACTTTAAGACTGTTACTGCTGTAGAATGGCACCGGAAAGGTGACTACTTTTCGACAGTGATGCCGGCAGGTGAATCAAGAGCAGTTCTGATACACCAGTTATCCAAAAAGCTTACGCAAAAACTTCCATTCAAATTACATGGACTTGCTGTTAGGTCAACCTTCCATCCATCCCGTTCCATCTTCTTTGTATGTACCAAAAAGAGTGTTCGTGTGTATGATTTATTGAAGACCAAGATCATAAAAAAGCTTGATACTGGGCTTCGTGAAGCTTCATCCATTGCAGTTCATCCTGGAGGTGATAATTTAATTGTCGGTAGCAAAGAGGGGAAGATGTGTTGGTTTGACATGGACCTTTCATCTAAACCGTATAAAATTCTTAAGTGTCACCCAAAAGATATCAACAATGTCATCTTTCATCGCTCGTATCCCCTATTTGCTTCATGTTCAGATGACTGCACTGCATATGTTTTTCATGGAATGGTTTATTCTGATCTCAATCAAAATCCTCTTATTGTTCCTTTAGAAATTCTACGAGGTCATACCAATTCAAATGGGAGAGGGATACTGGACTGTAAATTTCACCCGAGACAGCCATGGTTATTTACGGCTGGTGCTGATAAACTGATTAAACTTTATTGTCATTAA >Glyma12g28910.2 sequence type=CDS gene model=Glyma12g28910 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAAGGGAAGAAGAACACCATGACCAAAAACGACGTTGAAGACGACGGAGCTCCGGTTCCTTCACCAACAGTATCCGATTCCGACTCTGATTACGAGGACTCTTCAGCAGATGACGACGACAAATCTTCTGACTCGCTGGATTCTCAATCTGAATCGGAATTAGAAGATGCTTCACCTGAGAATGGTGGCTCCGGCGATGTAGAATCTGCAGAAGATGAGGACACTGTCAATGATGAAGACGGTGGAAGTGAGAGCTCTGATCTCCATCAGGAAGGAGCTGAGAGTGATTCCTCCGAGGATGAGGTGGCTCCTCGAAACACCATTGGAGATGTGCCATTGAAGTGGTATGAGGATGAGCCTCATATTGGATACGACATCAAGGCAAAAAAGATTAAGAAAAAGGAAAAGCAAGACAAGTTGGATTCATTTCTTGCAAGTGTTGATGATTCTAAGAATTGGCGGAAGATCTATGATGAGTACAATGATGAGGTAGTTGAGTTGACAAAAGATGAAATCAAACTTGTCCGTAGACTGCTAAAGAATCGGGCACCCCATTCTGACTTTGATCCATATCCAGATGGTGTTGACTGGTTTAAATGGGAAGACGCCAAACATCCATTGTCTAATGCACCTGAACCAAAAAGAAGGTTTATTCCATCAAAGTGGGAAGCTAAAAAGGTTGTACAGTATGTTAGAGCAATCCGCCAGGGATTAATCACTTTTGACAAGCCAAAAGAGGAAGATGGTCCATATCTCTTGTGGGGAGATGATTCTGGTTCAACAGAAAGAGCAAATCATTTGGCTTACATTCCTGCCCCAAAGCAGAAGTTACCTGGCCATGATGAGTCATATAATCCTCCTCTAGAGTACATTCCAACCCAAGAAGAGGTCAATTCTTATCAATTGATGTTTGAGGAAGACCGCCCTAAGTTTATTCCTAAAAGGTTTGCATCTATGAGGAGCATTCCTGCATATGAGAATGCTATGAAAGACTGCTTTGAACGTTGTTTGGATTTGTATTTATGTCCTCGAGTTCGGAAAAAACGTCTCAATATCGATCCTGAATCTTTAAAGCCAAAGCTTCCAAGTCGAAAGGAGCTTAAGCCTTATCCCACAACATGCTATATCGAGTATAAAGGCCATGAAGATGCTGTTACATCAATTTCACTCGAAGCTTCAGGACAATGGATGGCTTCAGGTTCAAGTGATGGAACTGTCCGTATCTGGGAGGTTGAAACTGGCAGATGTCTTAGGCGGTGGGAGGTTGGTGAATCTGTTAGCTGTGTTGCTTGGAATCCTCTGCCCAATATTCATCTTCTGGCGGTTTCTGTGGGCCAAGATGTACTTCTACTTAACACTTGTTTGGGGGATGACGAAGAGCAGAAACAGATTAAGGAGCTTCTCTGGGTTGACTCATCTACAGCATTGGATGACTCTGGCAACCAAGCACCTAGTGTAAGCTGGCTTAAAGATGATAAACATATGGGTTTAAGGTTAAGGCACTTTAAGACTGTTACTGCTGTAGAATGGCACCGGAAAGGTGACTACTTTTCGACAGTGATGCCGGCAGGTGAATCAAGAGCAGTTCTGATACACCAGTTATCCAAAAAGCTTACGCAAAAACTTCCATTCAAATTACATGGACTTGCTGTTAGGTCAACCTTCCATCCATCCCGTTCCATCTTCTTTGTATGTACCAAAAAGAGTGTTCGTGTGTATGATTTATTGAAGACCAAGATCATAAAAAAGCTTGATACTGGGCTTCGTGAAGCTTCATCCATTGCAGTTCATCCTGGAGGTGATAATTTAATTGTCGGTAGCAAAGAGGGGAAGATGTGTTGGTTTGACATGGACCTTTCATCTAAACCGTATAAAATTCTTAAGTAA
>Glyma12g28910.1 sequence type=predicted peptide gene model=Glyma12g28910 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKGKKNTMTKNDVEDDGAPVPSPTVSDSDSDYEDSSADDDDKSSDSLDSQSESELEDASPENGGSGDVESAEDEDTVNDEDGGSESSDLHQEGAESDSSEDEVAPRNTIGDVPLKWYEDEPHIGYDIKAKKIKKKEKQDKLDSFLASVDDSKNWRKIYDEYNDEVVELTKDEIKLVRRLLKNRAPHSDFDPYPDGVDWFKWEDAKHPLSNAPEPKRRFIPSKWEAKKVVQYVRAIRQGLITFDKPKEEDGPYLLWGDDSGSTERANHLAYIPAPKQKLPGHDESYNPPLEYIPTQEEVNSYQLMFEEDRPKFIPKRFASMRSIPAYENAMKDCFERCLDLYLCPRVRKKRLNIDPESLKPKLPSRKELKPYPTTCYIEYKGHEDAVTSISLEASGQWMASGSSDGTVRIWEVETGRCLRRWEVGESVSCVAWNPLPNIHLLAVSVGQDVLLLNTCLGDDEEQKQIKELLWVDSSTALDDSGNQAPSVSWLKDDKHMGLRLRHFKTVTAVEWHRKGDYFSTVMPAGESRAVLIHQLSKKLTQKLPFKLHGLAVRSTFHPSRSIFFVCTKKSVRVYDLLKTKIIKKLDTGLREASSIAVHPGGDNLIVGSKEGKMCWFDMDLSSKPYKILKCHPKDINNVIFHRSYPLFASCSDDCTAYVFHGMVYSDLNQNPLIVPLEILRGHTNSNGRGILDCKFHPRQPWLFTAGADKLIKLYCH* >Glyma12g28910.2 sequence type=predicted peptide gene model=Glyma12g28910 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKGKKNTMTKNDVEDDGAPVPSPTVSDSDSDYEDSSADDDDKSSDSLDSQSESELEDASPENGGSGDVESAEDEDTVNDEDGGSESSDLHQEGAESDSSEDEVAPRNTIGDVPLKWYEDEPHIGYDIKAKKIKKKEKQDKLDSFLASVDDSKNWRKIYDEYNDEVVELTKDEIKLVRRLLKNRAPHSDFDPYPDGVDWFKWEDAKHPLSNAPEPKRRFIPSKWEAKKVVQYVRAIRQGLITFDKPKEEDGPYLLWGDDSGSTERANHLAYIPAPKQKLPGHDESYNPPLEYIPTQEEVNSYQLMFEEDRPKFIPKRFASMRSIPAYENAMKDCFERCLDLYLCPRVRKKRLNIDPESLKPKLPSRKELKPYPTTCYIEYKGHEDAVTSISLEASGQWMASGSSDGTVRIWEVETGRCLRRWEVGESVSCVAWNPLPNIHLLAVSVGQDVLLLNTCLGDDEEQKQIKELLWVDSSTALDDSGNQAPSVSWLKDDKHMGLRLRHFKTVTAVEWHRKGDYFSTVMPAGESRAVLIHQLSKKLTQKLPFKLHGLAVRSTFHPSRSIFFVCTKKSVRVYDLLKTKIIKKLDTGLREASSIAVHPGGDNLIVGSKEGKMCWFDMDLSSKPYKILK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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