SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G09800 | AT | Annotation by Michelle Graham. TAIR10: Pseudouridine synthase family protein | chr1:3177121-3180336 REVERSE LENGTH=372 | SoyBase | E_val: 1.00E-170 | ISS |
| GO:0001522 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pseudouridine synthesis | SoyBase | N/A | ISS |
| GO:0009451 | GO-bp | Annotation by Michelle Graham. GO Biological Process: RNA modification | SoyBase | N/A | ISS |
| GO:0019243 | GO-bp | Annotation by Michelle Graham. GO Biological Process: methylglyoxal catabolic process to D-lactate | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003723 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: RNA binding | SoyBase | N/A | ISS |
| GO:0009982 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: pseudouridine synthase activity | SoyBase | N/A | ISS |
| KOG4393 | KOG | Predicted pseudouridylate synthase | JGI | ISS | |
| PTHR11142 | Panther | PSEUDOURIDYLATE SYNTHASE | JGI | ISS | |
| PF01416 | PFAM | tRNA pseudouridine synthase | JGI | ISS | |
| UniRef100_I1LTC4 | UniRef | Annotation by Michelle Graham. Best UniRef hit: tRNA pseudouridine synthase A 2 n=1 Tax=Glycine max RepID=I1LTC4_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_I1LTC4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: tRNA pseudouridine synthase A 2 n=1 Tax=Glycine max RepID=I1LTC4_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma12g28832 not represented in the dataset |
Glyma12g28832 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma16g00480 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.12g167000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma12g28832.2 sequence type=transcript gene model=Glyma12g28832 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CAGAAACTGTATATCCTAGTTTGTAATTGATTGACTTATATTTATCTATTCAATATTCAATTACTAATTAGCATTTAGCAGGAGGAACAAAAAAAAAGGCTTTAGATATAGGGAAACTTTTTAATTATTTTTGGTATGGTGAGAAGTGCAAGAAGAGGAAGAAGTTGAGTTGAGTTGAGGTTGGAGCTGAAAGAAAATTGAGTGAGAATTCAATGACACAGAATCTGAAGCATACCGTGGATTTGGAATGCAGTGATAATAGCAGGCCGTCAAAGATATCAAAAATCGAGTATCCGAGTGACAGTGACATTGACGAAGAAGAAGAAGGAATGAGCCAAAACCCTAGGAATGGGATTCAGCGCTATTTGGTTGCAATCGAGTATATTGGGACTCTCTTCTCCGGTTCTCAGAAGCAGCTCAATGTCCGTACCGTCGTCGGTGCTCTTGAGGAAGCTTTTTCCAAATTTGTTGGCCAACCGGTCTCTGTGTCTTGTTCAAGTCGAACTGATGCTGGAGTGCATGCTTTGTCAAATGTTTGTCATGTTGATATTCAACGCATCAGCAAAAGGAGGCCTGGTGAAGTGTTACCACCTCATGAACCTGCTGTCGTTGGAAGAGCTGTAAACCATTTCTTACAGAAGCACGACAGTGACTTAATGGTTATTGATGTTCGATGTGTTCCATCTGATTTTCATGCAAGATTTAAAGCGCAAGAGCGCACATACTTCTATCGGTTGCTTTCTGGGCCAGAGCCTTTGTCAACCTTCGAGAAAGATCGAGCATGGCATGTACCTGAGGAGCTTAGTCTTCCAGCTATGCAAGAAGCATGCAGAGTTCTTGTTGGATGCCATGATTTTAGTTCCTTCAGGGCAGCTGGTTGTCAGGCAAAGTCACCTATTAGAACTTTGGATGAACTCAGTGTCAATGAGGTAATTGAAAGTCCATATTTTCCATCTCTAATGGATAGAGAACAACATAATAAAGTCAGTGGTGATCTTCGTAGCTGCTCCAACAACACTGAAACTGACATTCCTCCTATTTCTAATCCAAGCATTGATAAAGTAATTACATCAAGTCAAGATGCAGGATTTGGCAAAAGAAGGCGACATCGTTGCTTGGTGGTAACAGCACGTGCGCGTTCTTTTCTTTACCATCAGGTTAGACTACTTGTTGGTGTTCTCAAGGCTGCTGGCACTGGAAACTTAACAATTCCGGATGTTGAGAGAATTTTGAATGCGAAGACTGTTACTGCCGCAAGTCCAATGGCCCCGGCATGTGGTCTCTACCTAGGAGAGGTGAAATATGATCTACCTACCACTTAAGTAGATAGATATTTCAGGGTCTCTCGGAAACACTCATGCATTCGAGTTAAAAGCTGCTGTAGGATTCAATTTCAATCCAATGGACTAGATTTTTTTATATTTTGTGTAAATGTGCCATTTAAGGGTTTTTATATCCTTGGAAGTCCCCCAGCAGAGGATTAATTTTGTCCGTTCTATCTCTATTAATTTTCGTTTAACATTACTCGGACTCCCATCTTTACTTTTTCTTTTACTTTAAAAAATAAAAAATAAACGTATAAAAATTATCTTCTGCGA >Glyma12g28832.3 sequence type=transcript gene model=Glyma12g28832 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TTCAATTACTAATTAGCATTTAGCAGGAGGAACAAAAAAAAAGGCTTTAGATATAGGGAAACTTTTTAATTATTTTTGGTATGGTGAGAAGTGCAAGAAGAGGAAGAAGTTGAGTTGAGTTGAGGTTGGAGCTGAAAGAAAATTGAGTGAGAATTCAATGACACAGAATCTGAAGCATACCGTGGATTTGGAATGCAGTGATAATAGCAGGCCGTCAAAGATATCAAAAATCGAGTATCCGAGTGACAGTGACATTGACGAAGAAGAAGAAGGAATGAGCCAAAACCCTAGGAATGGGATTCAGCGCTATTTGGTTGCAATCGAGTATATTGGGACTCTCTTCTCCGGTTCTCAGAAGCAGCTCAATGTCCGTACCGTCGTCGGTGCTCTTGAGGAAGCTTTTTCCAAATTTGTTGGCCAACCGGTCTCTGTGTCTTGTTCAAGTCGAACTGATGCTGGAGTGCATGCTTTGTCAAATGTTTGTCATGTTGATATTCAACGCATCAGCAAAAGGAGGCCTGGTGAATTACCACCTCATGAACCTGCTGTCGTTGGAAGAGCTGTAAACCATTTCTTACAGAAGCACGACAGTGACTTAATGGTTATTGATGTTCGATGTGTTCCATCTGATTTTCATGCAAGATTTAAAGCGCAAGAGCGCACATACTTCTATCGGTTGCTTTCTGGGCCAGAGCCTTTGTCAACCTTCGAGAAAGATCGAGCATGGCATGTACCTGAGGAGCTTAGTCTTCCAGCTATGCAAGAAGCATGCAGAGTTCTTGTTGGATGCCATGATTTTAGTTCCTTCAGGGCAGCTGGTTGTCAGGCAAAGTCACCTATTAGAACTTTGGATGAACTCAGTGTCAATGAGGTAATTGAAAGTCCATATTTTCCATCTCTAATGGATAGAGAACAACATAATAAAGTCAGTGGTGATCTTCGTAGCTGCTCCAACAACACTGAAACTGACATTCCTCCTATTTCTAATCCAAGCATTGATAAAGTAATTACATCAAGTCAAGATGCAGGATTTGGCAAAAGAAGGCGACATCGTTGCTTGGTGGTAACAGCACGTGCGCGTTCTTTTCTTTACCATCAGGTTAGACTACTTGTTGGTGTTCTCAAGGCTGCTGGCACTGGAAACTTAACAATTCCGGATGTTGAGAGAATTTTGAATGCGAAGACTGTTACTGCCGCAAGTCCAATGGCCCCGGCATGTGGTCTCTACCTAGGAGAGGTGAAATATGATCTACCTACCACTTAAGTAGATAGATATTTCAGGGTCTCTCGGAAACACTCATGCATTCGAGTTAAAAGCTGCTGTAGGATTCAATTTCAATCCAATGGACTAGATTTTTTTATATTTTGTGTAAATGTGCCATTTAAGGGTTTTTATATCCTTGGAAGTCCCCCAGCAGAGGATTAATTTTGTCCGTTCTATCTCTATTAATTTTCGTTTAACATTACTCGGACTCCCA
>Glyma12g28832.1 sequence type=CDS gene model=Glyma12g28832 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGACACAGAATCTGAAGCATACCGTGGATTTGGAATGCAGTGATAATAGCAGGCCGTCAAAGATATCAAAAATCGAGTATCCGAGTGACAGTGACATTGACGAAGAAGAAGAAGGAATGAGCCAAAACCCTAGGAATGGGATTCAGCGCTATTTGGTTGCAATCGAGTATATTGGGACTCTCTTCTCCGGTTCTCAGAAGCAGCTCAATGTCCGTACCGTCGTCGGTGCTCTTGAGGAAGCTTTTTCCAAATTTGTTGGCCAACCGGTCTCTGTGTCTTGTTCAAGTCGAACTGATGCTGGAGTGCATGCTTTGTCAAATGTTTGTCATGTTGATATTCAACGCATCAGCAAAAGGAGGCCTGGTGAAGTGTTACCACCTCATGAACCTGCTGTCGTTGGAAGAGCTGTAAACCATTTCTTACAGAAGCACGACAGTGACTTAATGGTTATTGATGTTCGATGTGTTCCATCTGATTTTCATGCAAGATTTAAAGCGCAAGAGCGCACATACTTCTATCGGTTGCTTTCTGGGCCAGAGCCTTTGTCAACCTTCGAGAAAGATCGAGCATGGCATGTACCTGAGGAGCTTAGTCTTCCAGCTATGCAAGAAGCATGCAGAGTTCTTGTTGGATGCCATGATTTTAGTTCCTTCAGGGCAGCTGGTTGTCAGGCAAAGTCACCTATTAGAACTTTGGATGAACTCAGTGTCAATGAGGTAATTGAAAGTCCATATTTTCCATCTCTAATGGATAGAGAACAACATAATAAAGTCAGTGGTGATCTTCGTAGCTGCTCCAACAACACTGAAACTGACATTCCTCCTATTTCTAATCCAAGCATTGATAAAGTAATTACATCAAGTCAAGATGCAGGATTTGGCAAAAGAAGGCGACATCGTTGCTTGGTGGTAACAGCACGTGCGCGTTCTTTTCTTTACCATCAGGTTGGGTATTCTTTTCTTTACCATCAGGTTGGGTATTCTTTTCTTTACCATCAGGTTAGACTACTTGTTGGTGTTCTCAAGGCTGCTGGCACTGGAAACTTAACAATTCCGGATGTTGAGAGAATTTTGAATGCGAAGACTGTTACTGCCGCAAGTCCAATGGCCCCGGCATGTGGTCTCTACCTAGGAGAGGTGAAATATGATCTACCTACCACTTAA >Glyma12g28832.2 sequence type=CDS gene model=Glyma12g28832 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGACACAGAATCTGAAGCATACCGTGGATTTGGAATGCAGTGATAATAGCAGGCCGTCAAAGATATCAAAAATCGAGTATCCGAGTGACAGTGACATTGACGAAGAAGAAGAAGGAATGAGCCAAAACCCTAGGAATGGGATTCAGCGCTATTTGGTTGCAATCGAGTATATTGGGACTCTCTTCTCCGGTTCTCAGAAGCAGCTCAATGTCCGTACCGTCGTCGGTGCTCTTGAGGAAGCTTTTTCCAAATTTGTTGGCCAACCGGTCTCTGTGTCTTGTTCAAGTCGAACTGATGCTGGAGTGCATGCTTTGTCAAATGTTTGTCATGTTGATATTCAACGCATCAGCAAAAGGAGGCCTGGTGAAGTGTTACCACCTCATGAACCTGCTGTCGTTGGAAGAGCTGTAAACCATTTCTTACAGAAGCACGACAGTGACTTAATGGTTATTGATGTTCGATGTGTTCCATCTGATTTTCATGCAAGATTTAAAGCGCAAGAGCGCACATACTTCTATCGGTTGCTTTCTGGGCCAGAGCCTTTGTCAACCTTCGAGAAAGATCGAGCATGGCATGTACCTGAGGAGCTTAGTCTTCCAGCTATGCAAGAAGCATGCAGAGTTCTTGTTGGATGCCATGATTTTAGTTCCTTCAGGGCAGCTGGTTGTCAGGCAAAGTCACCTATTAGAACTTTGGATGAACTCAGTGTCAATGAGGTAATTGAAAGTCCATATTTTCCATCTCTAATGGATAGAGAACAACATAATAAAGTCAGTGGTGATCTTCGTAGCTGCTCCAACAACACTGAAACTGACATTCCTCCTATTTCTAATCCAAGCATTGATAAAGTAATTACATCAAGTCAAGATGCAGGATTTGGCAAAAGAAGGCGACATCGTTGCTTGGTGGTAACAGCACGTGCGCGTTCTTTTCTTTACCATCAGGTTAGACTACTTGTTGGTGTTCTCAAGGCTGCTGGCACTGGAAACTTAACAATTCCGGATGTTGAGAGAATTTTGAATGCGAAGACTGTTACTGCCGCAAGTCCAATGGCCCCGGCATGTGGTCTCTACCTAGGAGAGGTGAAATATGATCTACCTACCACTTAA >Glyma12g28832.3 sequence type=CDS gene model=Glyma12g28832 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGACACAGAATCTGAAGCATACCGTGGATTTGGAATGCAGTGATAATAGCAGGCCGTCAAAGATATCAAAAATCGAGTATCCGAGTGACAGTGACATTGACGAAGAAGAAGAAGGAATGAGCCAAAACCCTAGGAATGGGATTCAGCGCTATTTGGTTGCAATCGAGTATATTGGGACTCTCTTCTCCGGTTCTCAGAAGCAGCTCAATGTCCGTACCGTCGTCGGTGCTCTTGAGGAAGCTTTTTCCAAATTTGTTGGCCAACCGGTCTCTGTGTCTTGTTCAAGTCGAACTGATGCTGGAGTGCATGCTTTGTCAAATGTTTGTCATGTTGATATTCAACGCATCAGCAAAAGGAGGCCTGGTGAATTACCACCTCATGAACCTGCTGTCGTTGGAAGAGCTGTAAACCATTTCTTACAGAAGCACGACAGTGACTTAATGGTTATTGATGTTCGATGTGTTCCATCTGATTTTCATGCAAGATTTAAAGCGCAAGAGCGCACATACTTCTATCGGTTGCTTTCTGGGCCAGAGCCTTTGTCAACCTTCGAGAAAGATCGAGCATGGCATGTACCTGAGGAGCTTAGTCTTCCAGCTATGCAAGAAGCATGCAGAGTTCTTGTTGGATGCCATGATTTTAGTTCCTTCAGGGCAGCTGGTTGTCAGGCAAAGTCACCTATTAGAACTTTGGATGAACTCAGTGTCAATGAGGTAATTGAAAGTCCATATTTTCCATCTCTAATGGATAGAGAACAACATAATAAAGTCAGTGGTGATCTTCGTAGCTGCTCCAACAACACTGAAACTGACATTCCTCCTATTTCTAATCCAAGCATTGATAAAGTAATTACATCAAGTCAAGATGCAGGATTTGGCAAAAGAAGGCGACATCGTTGCTTGGTGGTAACAGCACGTGCGCGTTCTTTTCTTTACCATCAGGTTAGACTACTTGTTGGTGTTCTCAAGGCTGCTGGCACTGGAAACTTAACAATTCCGGATGTTGAGAGAATTTTGAATGCGAAGACTGTTACTGCCGCAAGTCCAATGGCCCCGGCATGTGGTCTCTACCTAGGAGAGGTGAAATATGATCTACCTACCACTTAA
>Glyma12g28832.1 sequence type=predicted peptide gene model=Glyma12g28832 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MTQNLKHTVDLECSDNSRPSKISKIEYPSDSDIDEEEEGMSQNPRNGIQRYLVAIEYIGTLFSGSQKQLNVRTVVGALEEAFSKFVGQPVSVSCSSRTDAGVHALSNVCHVDIQRISKRRPGEVLPPHEPAVVGRAVNHFLQKHDSDLMVIDVRCVPSDFHARFKAQERTYFYRLLSGPEPLSTFEKDRAWHVPEELSLPAMQEACRVLVGCHDFSSFRAAGCQAKSPIRTLDELSVNEVIESPYFPSLMDREQHNKVSGDLRSCSNNTETDIPPISNPSIDKVITSSQDAGFGKRRRHRCLVVTARARSFLYHQVGYSFLYHQVGYSFLYHQVRLLVGVLKAAGTGNLTIPDVERILNAKTVTAASPMAPACGLYLGEVKYDLPTT* >Glyma12g28832.2 sequence type=predicted peptide gene model=Glyma12g28832 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MTQNLKHTVDLECSDNSRPSKISKIEYPSDSDIDEEEEGMSQNPRNGIQRYLVAIEYIGTLFSGSQKQLNVRTVVGALEEAFSKFVGQPVSVSCSSRTDAGVHALSNVCHVDIQRISKRRPGEVLPPHEPAVVGRAVNHFLQKHDSDLMVIDVRCVPSDFHARFKAQERTYFYRLLSGPEPLSTFEKDRAWHVPEELSLPAMQEACRVLVGCHDFSSFRAAGCQAKSPIRTLDELSVNEVIESPYFPSLMDREQHNKVSGDLRSCSNNTETDIPPISNPSIDKVITSSQDAGFGKRRRHRCLVVTARARSFLYHQVRLLVGVLKAAGTGNLTIPDVERILNAKTVTAASPMAPACGLYLGEVKYDLPTT* >Glyma12g28832.3 sequence type=predicted peptide gene model=Glyma12g28832 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MTQNLKHTVDLECSDNSRPSKISKIEYPSDSDIDEEEEGMSQNPRNGIQRYLVAIEYIGTLFSGSQKQLNVRTVVGALEEAFSKFVGQPVSVSCSSRTDAGVHALSNVCHVDIQRISKRRPGELPPHEPAVVGRAVNHFLQKHDSDLMVIDVRCVPSDFHARFKAQERTYFYRLLSGPEPLSTFEKDRAWHVPEELSLPAMQEACRVLVGCHDFSSFRAAGCQAKSPIRTLDELSVNEVIESPYFPSLMDREQHNKVSGDLRSCSNNTETDIPPISNPSIDKVITSSQDAGFGKRRRHRCLVVTARARSFLYHQVRLLVGVLKAAGTGNLTIPDVERILNAKTVTAASPMAPACGLYLGEVKYDLPTT*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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