Glyma12g28780 - SoyBase

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Report for Sequence Feature Glyma12g28780

Feature Type:	gene_model
Chromosome:	Gm12
Start:	32137521
stop:	32149754
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma12g28780

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G24290	AT	Annotation by Michelle Graham. TAIR10: MAC/Perforin domain-containing protein \| chr4:12594856-12597815 FORWARD LENGTH=606	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PTHR19324	Panther	COMPLEMENT COMPONENT C6-9	JGI		ISS
PTHR19324:SF4	Panther	COMPLEMENT COMPONENT C6	JGI		ISS
PF01823	PFAM	MAC/Perforin domain	JGI		ISS
UniRef100_I1LTB9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LTB9_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q1SKW8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Membrane attack complex component/perforin/complement C9 n=1 Tax=Medicago truncatula RepID=Q1SKW8_MEDTR	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma12g28780

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma12g28780 not represented in the dataset	Glyma12g28780 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma12g28780

Paralog	Evidence	Comments
Glyma16g00440	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma12g28780 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.12g166500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma12g28780

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma12g28780

Limit To All Plant Sequences

>Glyma12g28780.3   sequence type=transcript   gene model=Glyma12g28780   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAAGAATCTATCATTACTCTTCAAAATGTTTCACTATGGCTTAAATTAAAGATCATAATTTGCAAATGATACCAAAAGTGCAAGTATGATTTTGTACTGAGTCAGAAAGTACAGTCAATGTTTTGGGATAATGGTGGCCGTAAAGTTTGAGAATCCCATATTCCAAACTGTAATCTTCAATGCTATTATTGCTCTCATTTGTCGCTCAATAGTTAAAAATTACTCCTAAATGTATGTTAGTCCACTACTCTTCCAGTTCCCATTCAACTCTCTCCTCTCTCTTCGTCTAATTTCCCCCCGAAAAATCCAATTTTTACTTTAGGGTTTTGAAATCCCAGCTACTGCTTTCGCCTGATCTGCGATTAGCGATTGGGTGGCGGCCTCTATTTCCGAGGCTGTGATAAGCTTATCTTGCACCTGAAGAGTGATGTGCTGAGACATGGCACTTAAAGTTTCTGCTGGTAAGGCTGCCGAGATTGCAATTGGGTCCATTGGTCGTGGCTATGATATATCTACTGATATAAGGCTCAAGTATTGTAAAGGGGATTCCATAAATTCACGTTTAATTGAGATAGATGAAACTGATGTAAGAGAGGTGGTACTACCTGGTGGAGTTTCAATACCAAATGTTTCCAAATCAATAAAATGTGATAAAGGGGAACGCATACGGTTCAGGTCCGATGTTCTGTCTTTTCAACAGATGTCAGAGCAATTCAATCAGGAGTTATCTTTGACTGGCAAGATTCCCTCAGGTCTTTTCAATACAATGTTTGAATTTTCTGGGAGTTGGCAAAGAGATGCAGCCCATACAAAGTCCCTTGCTTTTGATGGGGTCTTAATTACACTTTACACTGTTGCATTAGAGAAGTCTCAGATGGTCCTCTGTGACCACGTTAAAAAAGCTGTACCATCATCATGGGACCCTCCTGCATTAGCAAGGTTTATTGATACCTTTGGTACCCATATAATTGTTGGTATGAAAATGGGTGGAAAAGATGTAATATATTTGAAGCAGCAGCACTCATCAACTCTCCAACCTGCTGATGTTCAGAAAAAATTGAAAGAGATGGCCGATAGGAGGTTTCTAGATGCCAATGGCCACTATAGCATTGCTTCTGATCAAGTTTTCCCAAATGACAAGTTTGGAATCAGGGAGCAGAGGCTAACATTTGCTAATATTAGTCCATCAAGTTCTTATTCACATAAGGAGGATATTGTAAGCATTTGCAAGAGGAGGGGTGGGAGGGATGACAGAAATCTATCCCATAATGAGTGGTTGCAAACTGTTCAGTCAGAGCCTGATGTGATCTCAATGTCGTTCATTCCAATTACGTCTGTATTGAATGGAGTGCCAGGGAGTGGATTCTTGAGCCATGCCATAAACCTTTATTTGCGATATAAACCACCGATTGTAGAGCTCCACCAATTCTTGGAATTCCAGCTGCCAAGGCAGTGGGCACCTGTATTCAGTGACCTTCCTCTTGGTCCCCAACGAAAGCAACGGAGTTCTGCATCTTTACAGTTTAGCTTCATGGGCCCAAAGCTTTATGTTAACTCCACACAGGTTGATGTAGGTAAGAGGCCAGTGACTGGTCTCCGTCTTTATCTTGAAGGTAAGAAAAGCAATCGGTTGGCCATCCATTTGCAACACCTTTCATCACTTCCAAAAATCTTCCAGCTTGAAGATGATCCAAATGAAAACTTTTGGCGGAAGTCTTATGATAGGAGATTCTATGAGAAGGTTCAATGGAAGAATTTCTCTCATGTGTGCACTGCTCCGGTGGAATCTGAGGAGGATCTTTCAATAGTGACTGGAGCACAATTGCAAGTTGAGAATTATGGCATAAAAAATATACTCTTCTTAAGACTTCGATTCTCAACTGTGTTGGGAGCTAAAGCAGTGAAGCATCCTGAGTGGGAGGGGTCGCTCAAGTTGGGAGCGAAGTCAGGACTCATATCCACTTTAATCAGCCAACACTTCACGTCAACATTTCAGAAGCCACCTCCGCGACCAGCAGATGTTAATATAAATTCTGCTGTCTATCCGGGCGGCCCTCCTGTTCCTGTGCAAGCTCCTAAGCTTCTCAAATTTGTTGACACAACTGAGATGACCAGAGGACCACAAGAGTCTCCTGGCTATTGGGTTATCTCTGGAGCAAAGCTTGTTGTTGATAAGGGCAAGATTTCTCTCCGGGTTAAGTATTCTTTGTTGACCATGGTATTACCAGATGAAGAAGAGATGTTGGATGATCAGTAGCTGATTCCTTGCCTCCAGCAAACAAGTGCTCATTTTTAAAGTGTGGTAGGTCGGGAAATAAGAAAGAAGGTAGAGGGTACTACTAGTTATCACTTGGCTTTGGTTTTGCTAATCAGGTTGGCCTTCTTGTGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGGCAAGTGTAAGTTACTCAAGGAGTGCAGTGGCTTTCCCCTTGTAATGTAAACTTTTACAGTCCAATACCATGACTTGTTGAAAATTACTATTAGAAATCAACTCCACTTTGGCCAATTAATTACTTATCGTGTTTGGGTAGGATCACCTTGACAAATTATGGTGTAAACAGTAATATATATCAATTTAATACGTTGAGAAATTATGTTTTCTTTCTTAATCATTCTCATTA

Coding sequences of Glyma12g28780

Limit To All Plant Sequences

>Glyma12g28780.2   sequence type=CDS   gene model=Glyma12g28780   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCACTTAAAGTTTCTGCTGGTAAGGCTGCCGAGATTGCAATTGGGTCCATTGGTCGTGGCTATGATATATCTACTGATATAAGGCTCAAGTATTGTAAAGGGGATTCCATAAATTCACGTTTAATTGAGATAGATGAAACTGATGTAAGAGAGGTGGTACTACCTGGTGGAGTTTCAATACCAAATGTTTCCAAATCAATAAAATGTGATAAAGGGGAACGCATACGGTTCAGGTCCGATGTTCTGTCTTTTCAACAGATGTCAGAGCAATTCAATCAGGAGTTATCTTTGACTGGCAAGATTCCCTCAGGTCTTTTCAATACAATGTTTGAATTTTCTGGGAGTTGGCAAAGAGATGCAGCCCATACAAAGTCCCTTGCTTTTGATGGGGTCTTAATTACACTTTACACTGTTGCATTAGAGAAGTCTCAGATGGTCCTCTGTGACCACGTTAAAAAAGCTGTACCATCATCATGGGACCCTCCTGCATTAGCAAGGTTTATTGATACCTTTGGTACCCATATAATTGTTGGTATGAAAATGGGTGGAAAAGATGTAATATATTTGAAGCAGCAGCACTCATCAACTCTCCAACCTGCTGATGTTCAGAAAAAATTGAAAGAGATGGCCGATAGGAGGTTTCTAGATGCCAATGGCCACTATAGCATTGCTTCTGATCAAGTTTTCCCAAATGACAAGTTTGGAATCAGGGAGCAGAGGCTAACATTTGCTAATATTAGTCCATCAAGTTCTTATTCACATAAGGAGGATATTGTAAGCATTTGCAAGAGGAGGGGTGGGAGGGATGACAGAAATCTATCCCATAATGAGTGGTTGCAAACTGTTCAGTCAGAGCCTGATGTGATCTCAATGTCGTTCATTCCAATTACGTCTGTATTGAATGGAGTGCCAGGGAGTGGATTCTTGAGCCATGCCATAAACCTTTATTTGCGATATAAACCACCGATTGTAGAGCTCCACCAATTCTTGGAATTCCAGCTGCCAAGGCAGTGGGCACCTGTATTCAGTGACCTTCCTCTTGGTCCCCAACGAAAGCAACGGAGTTCTGCATCTTTACAGTTTAGCTTCATGGGCCCAAAGCTTTATGTTAACTCCACACAGGTTGATGTAGGTAAGAGGCCAGTGACTGGTCTCCGTCTTTATCTTGAAGGTAAGAAAAGCAATCGGTTGGCCATCCATTTGCAACACCTTTCATCACTTCCAAAAATCTTCCAGCTTGAAGATGATCCAAATGAAAACTTTTGGCGGAAGTCTTATGATAGGAGATTCTATGAGAAGGTTCAATGGAAGAATTTCTCTCATGTGTGCACTGCTCCGGTGGAATCTGAGGAGGATCTTTCAATAGTGACTGGAGCACAATTGCAAGTTGAGAATTATGGCATAAAAAATATACTCTTCTTAAGACTTCGATTCTCAACTGTGTTGGGAGCTAAAGCAGTGAAGCATCCTGAGTGGGAGGGGTCGCTCAAGTTGGGAGCGAAGTCAGGACTCATATCCACTTTAATCAGCCAACACTTCACGTCAACATTTCAGAAGCCACCTCCGCGACCAGCAGATGTTAATATAAATTCTGCTGTCTATCCGGGCGGCCCTCCTGTTCCTGTGCAAGCTCCTAAGCTTCTCAAATTTGTTGACACAACTGAGATGACCAGAGGACCACAAGAGTCTCCTGGCTATTGGGTTATCTCTGGAGCAAAGCTTGTTGTTGATAAGGGCAAGATTTCTCTCCGGGTTAAGTATTCTTTGTTGACCATGGTATTACCAGATGAAGAAGAGATGTTGGATGATCAGTAG

>Glyma12g28780.3   sequence type=CDS   gene model=Glyma12g28780   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCACTTAAAGTTTCTGCTGGTAAGGCTGCCGAGATTGCAATTGGGTCCATTGGTCGTGGCTATGATATATCTACTGATATAAGGCTCAAGTATTGTAAAGGGGATTCCATAAATTCACGTTTAATTGAGATAGATGAAACTGATGTAAGAGAGGTGGTACTACCTGGTGGAGTTTCAATACCAAATGTTTCCAAATCAATAAAATGTGATAAAGGGGAACGCATACGGTTCAGGTCCGATGTTCTGTCTTTTCAACAGATGTCAGAGCAATTCAATCAGGAGTTATCTTTGACTGGCAAGATTCCCTCAGGTCTTTTCAATACAATGTTTGAATTTTCTGGGAGTTGGCAAAGAGATGCAGCCCATACAAAGTCCCTTGCTTTTGATGGGGTCTTAATTACACTTTACACTGTTGCATTAGAGAAGTCTCAGATGGTCCTCTGTGACCACGTTAAAAAAGCTGTACCATCATCATGGGACCCTCCTGCATTAGCAAGGTTTATTGATACCTTTGGTACCCATATAATTGTTGGTATGAAAATGGGTGGAAAAGATGTAATATATTTGAAGCAGCAGCACTCATCAACTCTCCAACCTGCTGATGTTCAGAAAAAATTGAAAGAGATGGCCGATAGGAGGTTTCTAGATGCCAATGGCCACTATAGCATTGCTTCTGATCAAGTTTTCCCAAATGACAAGTTTGGAATCAGGGAGCAGAGGCTAACATTTGCTAATATTAGTCCATCAAGTTCTTATTCACATAAGGAGGATATTGTAAGCATTTGCAAGAGGAGGGGTGGGAGGGATGACAGAAATCTATCCCATAATGAGTGGTTGCAAACTGTTCAGTCAGAGCCTGATGTGATCTCAATGTCGTTCATTCCAATTACGTCTGTATTGAATGGAGTGCCAGGGAGTGGATTCTTGAGCCATGCCATAAACCTTTATTTGCGATATAAACCACCGATTGTAGAGCTCCACCAATTCTTGGAATTCCAGCTGCCAAGGCAGTGGGCACCTGTATTCAGTGACCTTCCTCTTGGTCCCCAACGAAAGCAACGGAGTTCTGCATCTTTACAGTTTAGCTTCATGGGCCCAAAGCTTTATGTTAACTCCACACAGGTTGATGTAGGTAAGAGGCCAGTGACTGGTCTCCGTCTTTATCTTGAAGGTAAGAAAAGCAATCGGTTGGCCATCCATTTGCAACACCTTTCATCACTTCCAAAAATCTTCCAGCTTGAAGATGATCCAAATGAAAACTTTTGGCGGAAGTCTTATGATAGGAGATTCTATGAGAAGGTTCAATGGAAGAATTTCTCTCATGTGTGCACTGCTCCGGTGGAATCTGAGGAGGATCTTTCAATAGTGACTGGAGCACAATTGCAAGTTGAGAATTATGGCATAAAAAATATACTCTTCTTAAGACTTCGATTCTCAACTGTGTTGGGAGCTAAAGCAGTGAAGCATCCTGAGTGGGAGGGGTCGCTCAAGTTGGGAGCGAAGTCAGGACTCATATCCACTTTAATCAGCCAACACTTCACGTCAACATTTCAGAAGCCACCTCCGCGACCAGCAGATGTTAATATAAATTCTGCTGTCTATCCGGGCGGCCCTCCTGTTCCTGTGCAAGCTCCTAAGCTTCTCAAATTTGTTGACACAACTGAGATGACCAGAGGACCACAAGAGTCTCCTGGCTATTGGGTTATCTCTGGAGCAAAGCTTGTTGTTGATAAGGGCAAGATTTCTCTCCGGGTTAAGTATTCTTTGTTGACCATGGTATTACCAGATGAAGAAGAGATGTTGGATGATCAGTAG

Predicted protein sequences of Glyma12g28780

Limit To All Plant Sequences

>Glyma12g28780.2   sequence type=predicted peptide   gene model=Glyma12g28780   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MALKVSAGKAAEIAIGSIGRGYDISTDIRLKYCKGDSINSRLIEIDETDVREVVLPGGVSIPNVSKSIKCDKGERIRFRSDVLSFQQMSEQFNQELSLTGKIPSGLFNTMFEFSGSWQRDAAHTKSLAFDGVLITLYTVALEKSQMVLCDHVKKAVPSSWDPPALARFIDTFGTHIIVGMKMGGKDVIYLKQQHSSTLQPADVQKKLKEMADRRFLDANGHYSIASDQVFPNDKFGIREQRLTFANISPSSSYSHKEDIVSICKRRGGRDDRNLSHNEWLQTVQSEPDVISMSFIPITSVLNGVPGSGFLSHAINLYLRYKPPIVELHQFLEFQLPRQWAPVFSDLPLGPQRKQRSSASLQFSFMGPKLYVNSTQVDVGKRPVTGLRLYLEGKKSNRLAIHLQHLSSLPKIFQLEDDPNENFWRKSYDRRFYEKVQWKNFSHVCTAPVESEEDLSIVTGAQLQVENYGIKNILFLRLRFSTVLGAKAVKHPEWEGSLKLGAKSGLISTLISQHFTSTFQKPPPRPADVNINSAVYPGGPPVPVQAPKLLKFVDTTEMTRGPQESPGYWVISGAKLVVDKGKISLRVKYSLLTMVLPDEEEMLDDQ*

>Glyma12g28780.3   sequence type=predicted peptide   gene model=Glyma12g28780   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MALKVSAGKAAEIAIGSIGRGYDISTDIRLKYCKGDSINSRLIEIDETDVREVVLPGGVSIPNVSKSIKCDKGERIRFRSDVLSFQQMSEQFNQELSLTGKIPSGLFNTMFEFSGSWQRDAAHTKSLAFDGVLITLYTVALEKSQMVLCDHVKKAVPSSWDPPALARFIDTFGTHIIVGMKMGGKDVIYLKQQHSSTLQPADVQKKLKEMADRRFLDANGHYSIASDQVFPNDKFGIREQRLTFANISPSSSYSHKEDIVSICKRRGGRDDRNLSHNEWLQTVQSEPDVISMSFIPITSVLNGVPGSGFLSHAINLYLRYKPPIVELHQFLEFQLPRQWAPVFSDLPLGPQRKQRSSASLQFSFMGPKLYVNSTQVDVGKRPVTGLRLYLEGKKSNRLAIHLQHLSSLPKIFQLEDDPNENFWRKSYDRRFYEKVQWKNFSHVCTAPVESEEDLSIVTGAQLQVENYGIKNILFLRLRFSTVLGAKAVKHPEWEGSLKLGAKSGLISTLISQHFTSTFQKPPPRPADVNINSAVYPGGPPVPVQAPKLLKFVDTTEMTRGPQESPGYWVISGAKLVVDKGKISLRVKYSLLTMVLPDEEEMLDDQ*

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