Glyma12g28750 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Warning: Undefined variable $sxsome in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $sstart in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $send in /var/www/html/include/SeqFeatClass.php on line 665

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma12g28750): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma12g28750): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma12g28750

Feature Type:	gene_model
Chromosome:	Gm12
Start:	32105319
stop:	32107516
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma12g28750

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G49910	AT	Annotation by Michelle Graham. TAIR10: chloroplast heat shock protein 70-2 \| chr5:20303470-20306295 FORWARD LENGTH=718	SoyBase	E_val: 1.00E-147	ISS
GO:0006457	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein folding	SoyBase	N/A	ISS
GO:0009408	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to heat	SoyBase	N/A	ISS
GO:0009644	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to high light intensity	SoyBase	N/A	ISS
GO:0034976	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to endoplasmic reticulum stress	SoyBase	N/A	ISS
GO:0042542	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to hydrogen peroxide	SoyBase	N/A	ISS
GO:0045036	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein targeting to chloroplast	SoyBase	N/A	ISS
GO:0046686	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cadmium ion	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009532	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plastid stroma	SoyBase	N/A	ISS
GO:0009570	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma	SoyBase	N/A	ISS
GO:0009579	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: thylakoid	SoyBase	N/A	ISS
GO:0009941	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope	SoyBase	N/A	ISS
GO:0048046	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: apoplast	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0051082	GO-mf	Annotation by Michelle Graham. GO Molecular Function: unfolded protein binding	SoyBase	N/A	ISS
PTHR19375	Panther	HEAT SHOCK PROTEIN 70KDA	JGI		ISS
PF00012	PFAM	Hsp70 protein	JGI		ISS
UniRef100_I1LTB6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LTB6_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q1SKX2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Chaperone DnaK n=1 Tax=Medicago truncatula RepID=Q1SKX2_MEDTR	SoyBase	E_val: 1.00E-166	ISS

Expression Patterns of Glyma12g28750

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma12g28750 not represented in the dataset	Glyma12g28750 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma12g28750 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.12g166200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma12g28750

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma12g28750

Limit To All Plant Sequences

>Glyma12g28750.2   sequence type=transcript   gene model=Glyma12g28750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AATTTATGTTTTTAGGCTGGTGTCTTGGCTGGAGATGTCAGTGATATTGTGCTGTTGGATGTCACTCCATTATCTTTGGGTCTGGAAACTCTAGGTGGTGTGATGACAAAAATTATTCCAAGAAACACTACTCTTCCCACCTCAAAGTCCGAGGTTTTCTCAACCGCTGCTGATGGACAGACCAGTGTAGAGATCAATGTCCTTCAGGGGGAGAGAGAATTTGTTAGGGACAACAAATCACTTGGTAGCTTCCGCTTGGATGGTATCCCTCCTGCGCCTCGTGGTGTTCCCCAGATTGAGGTGAAATTTGACATTGATGCCAATGGCATTCTATCCGTCACTGCTATCGACAAAGGCACAGGGAAGAAACAAGATATTACCATCACTGGTGCTAGCACCTTGCCTTCAGATGAGGTGGAGAGAATGGTAAACGAAGCTGAGAAATTTTCGAAGGAAGACAAAGAGAAGAGGGATGCTATTGACACAAAGAACCAGGCAGACTCTGTGGTATACCAGACAGAAAAGCAATTGAAAGAGCTTGGAGACAAGGTTCCTGGCCCTGTGAAAGAGAAGGTTGAAGCAAAACTAGGAGAGCTTAAAGACGCCATTTCTGGGGGTTCAACCCAAGCTATCAAGGATGCCATGGCTGCACTAAATCAGGAAGTCATGCAGCTTGGTCAGTCCCTTTACAACCAACCAGGAGCTGCAGGCGCAGGAGGGCCAACACCACCACCCGGTGCCGACTCTGGCCCCTCAGAATCCTCAGGCAAGGGACCCGACGGTGATGTCATTGATGCAGATTTCACTGACTCTAAATGAGCAGGCAACTAGTTATTACCAATAGAGAGTATATGTTAGTATTTTTTCCCCCATTATATGTTTTCTTCTGTTCCAAATTCTTAATAATTTTTGTCAATGGAGAGTGGGTGCGTGTTTCCTTCAAATATTAGACACGGATTTCATAGGTTCGAATTGATGCTCGCTTTGTACCCTGGAATTTTGTCTCAGTAACAACACTGGTATTATTATGCGTGGCAAATTATTATAGGCTAAAAACGTTTCAGTAAGCTTATGAAACGTGATGACAGATTCTCAGGGAAAACGATCGATTCTTCCTACCTTTATAATACATTGCAAAAACACAAGCATAACAGAAATTGTTAATCGTTAACCAATGGTTTTTTTT

Coding sequences of Glyma12g28750

Limit To All Plant Sequences

>Glyma12g28750.1   sequence type=CDS   gene model=Glyma12g28750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTGCTCAAGCGCCCAAATACACGGTCTCGGAACCCCTTCCTCCCGAACCCTATTTTTAGGTCAGAGGCTAAATACCAAGGCCGCCTTTATCAAGCTCAAGTCCACACCTAGAAGACTCCGCCCTCTCAGAGTGGTTAATGAGAAAGTCGTCGGTATCGATTTGGGAACCACCAACTCCGCCGTGGCTGCCATGGAAGGCGGCAAGCCCACTATCATCACCAACGCCGAGGGCCAGAGAACCACGCCCTCCGTCGTGGCCTACACCAAGAATGGCGACAGGCTCGTTGGCCAAATCGCCAAGCGTCAGGCCGTCGTCAACCCCGAGAACACTTTCTTCTCCGTCAAGAGGTTCATCGGCCGCAAGATGTCTGAGGTCGACGAAGAGTCCAAGCAGGTCTCTTACAGAGTCATCAGAGACGACAACGGCAACGTCAAACTCGACTGCCCCGCCATTGGCAAACAGTTCGCTGCCGAGGAAATTTCTGCCCAGGCTGGTGTCTTGGCTGGAGATGTCAGTGATATTGTGCTGTTGGATGTCACTCCATTATCTTTGGGTCTGGAAACTCTAGGTGGTGTGATGACAAAAATTATTCCAAGAAACACTACTCTTCCCACCTCAAAGTCCGAGGTTTTCTCAACCGCTGCTGATGGACAGACCAGTGTAGAGATCAATGTCCTTCAGGGGGAGAGAGAATTTGTTAGGGACAACAAATCACTTGGTAGCTTCCGCTTGGATGGTATCCCTCCTGCGCCTCGTGGTGTTCCCCAGATTGAGGTGAAATTTGACATTGATGCCAATGGCATTCTATCCGTCACTGCTATCGACAAAGGCACAGGGAAGAAACAAGATATTACCATCACTGGTGCTAGCACCTTGCCTTCAGATGAGGTGGAGAGAATGGTAAACGAAGCTGAGAAATTTTCGAAGGAAGACAAAGAGAAGAGGGATGCTATTGACACAAAGAACCAGGCAGACTCTGTGGTATACCAGACAGAAAAGCAATTGAAAGAGCTTGGAGACAAGGTTCCTGGCCCTGTGAAAGAGAAGGTTGAAGCAAAACTAGGAGAGCTTAAAGACGCCATTTCTGGGGGTTCAACCCAAGCTATCAAGGATGCCATGGCTGCACTAAATCAGGAAGTCATGCAGCTTGGTCAGTCCCTTTACAACCAACCAGGAGCTGCAGGCGCAGGAGGGCCAACACCACCACCCGGTGCCGACTCTGGCCCCTCAGAATCCTCAGGCAAGGGACCCGACGGTGATGTCATTGATGCAGATTTCACTGACTCTAAATGA

>Glyma12g28750.2   sequence type=CDS   gene model=Glyma12g28750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACAAAAATTATTCCAAGAAACACTACTCTTCCCACCTCAAAGTCCGAGGTTTTCTCAACCGCTGCTGATGGACAGACCAGTGTAGAGATCAATGTCCTTCAGGGGGAGAGAGAATTTGTTAGGGACAACAAATCACTTGGTAGCTTCCGCTTGGATGGTATCCCTCCTGCGCCTCGTGGTGTTCCCCAGATTGAGGTGAAATTTGACATTGATGCCAATGGCATTCTATCCGTCACTGCTATCGACAAAGGCACAGGGAAGAAACAAGATATTACCATCACTGGTGCTAGCACCTTGCCTTCAGATGAGGTGGAGAGAATGGTAAACGAAGCTGAGAAATTTTCGAAGGAAGACAAAGAGAAGAGGGATGCTATTGACACAAAGAACCAGGCAGACTCTGTGGTATACCAGACAGAAAAGCAATTGAAAGAGCTTGGAGACAAGGTTCCTGGCCCTGTGAAAGAGAAGGTTGAAGCAAAACTAGGAGAGCTTAAAGACGCCATTTCTGGGGGTTCAACCCAAGCTATCAAGGATGCCATGGCTGCACTAAATCAGGAAGTCATGCAGCTTGGTCAGTCCCTTTACAACCAACCAGGAGCTGCAGGCGCAGGAGGGCCAACACCACCACCCGGTGCCGACTCTGGCCCCTCAGAATCCTCAGGCAAGGGACCCGACGGTGATGTCATTGATGCAGATTTCACTGACTCTAAATGA

Predicted protein sequences of Glyma12g28750

Limit To All Plant Sequences

>Glyma12g28750.1   sequence type=predicted peptide   gene model=Glyma12g28750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MACSSAQIHGLGTPSSRTLFLGQRLNTKAAFIKLKSTPRRLRPLRVVNEKVVGIDLGTTNSAVAAMEGGKPTIITNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMSEVDEESKQVSYRVIRDDNGNVKLDCPAIGKQFAAEEISAQAGVLAGDVSDIVLLDVTPLSLGLETLGGVMTKIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDIDANGILSVTAIDKGTGKKQDITITGASTLPSDEVERMVNEAEKFSKEDKEKRDAIDTKNQADSVVYQTEKQLKELGDKVPGPVKEKVEAKLGELKDAISGGSTQAIKDAMAALNQEVMQLGQSLYNQPGAAGAGGPTPPPGADSGPSESSGKGPDGDVIDADFTDSK*

>Glyma12g28750.2   sequence type=predicted peptide   gene model=Glyma12g28750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTKIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDIDANGILSVTAIDKGTGKKQDITITGASTLPSDEVERMVNEAEKFSKEDKEKRDAIDTKNQADSVVYQTEKQLKELGDKVPGPVKEKVEAKLGELKDAISGGSTQAIKDAMAALNQEVMQLGQSLYNQPGAAGAGGPTPPPGADSGPSESSGKGPDGDVIDADFTDSK*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain