SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G09640 | AT | Annotation by Michelle Graham. TAIR10: Translation elongation factor EF1B, gamma chain | chr1:3120162-3122152 FORWARD LENGTH=414 | SoyBase | E_val: 0 | ISS |
| GO:0006414 | GO-bp | Annotation by Michelle Graham. GO Biological Process: translational elongation | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005773 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: vacuole | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0005853 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: eukaryotic translation elongation factor 1 complex | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0009506 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma | SoyBase | N/A | ISS |
| GO:0003746 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: translation elongation factor activity | SoyBase | N/A | ISS |
| KOG1627 | KOG | Translation elongation factor EF-1 gamma | JGI | ISS | |
| PTHR11260 | Panther | GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING | JGI | ISS | |
| PTHR11260:SF7 | Panther | ELONGATION FACTOR 1-GAMMA | JGI | ISS | |
| PF00043 | PFAM | Glutathione S-transferase, C-terminal domain | JGI | ISS | |
| PF00647 | PFAM | Elongation factor 1 gamma, conserved domain | JGI | ISS | |
| PF02798 | PFAM | Glutathione S-transferase, N-terminal domain | JGI | ISS | |
| UniRef100_I1LTA4 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1LTA4_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q1SL16 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Elongation factor 1, gamma chain; Glutathione S-transferase, C-terminal; Thioredoxin-like fold n=1 Tax=Medicago truncatula RepID=Q1SL16_MEDTR | SoyBase | E_val: 0 | ISS |
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Glyma12g28670 not represented in the dataset |
Glyma12g28670 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma16g00360 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.12g165500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma12g28670.2 sequence type=transcript gene model=Glyma12g28670 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GCCAAAACAGGTTGAAATACTGAGTTTGATGGTTTGTATTTGGGCTTATGAAAACAAAGGTTGGGTCCAGCCCTTTTAGGGTTTCGTCAGAGTTATAAAATACCTAATTCATTTCCTCTGTGCCGCTTTCTTCTTCATCGTCGTCGTGGTCGTGTCGCAGCAAAACCAAGCCACCCACTAACTTGTTTGGTCCAAGACATGGCTCTGGTGAGTTTCCTTTCTATTCTTTTTGTTTTTCGGCAAATAACAAATTTTTATATGAATCTGAATGGAAATTGGTGTAGATCCTGCATGCTACCAAAACAAACAAGAATGCCTTCAAGACTCTGATTGCGGCAGAGTACAGTGGCGTCCAAGTGGAATTGGCCCCTAATTTCGAGATGGGTGTCTCTAACAAAACTCCTGAATTTCTCAAGATGAATCCTATTGGAAAGGTTCCTGTTTTGGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCAATCGCTCGTTACGGTATGTTTCTTTCTTTCTTTCCATTTCACGCTTTTCCTTTTTTAATTTTATCTTCATTTTTGTGATTTTCTCTTTTCAGTTGCTCGACTAAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATAATGCCCACATTGACCAGTGGATTGATTTTTCATCCTTGGAGATCGATGCTAATCTCATGAAATTGCTCCTACCAAGACTTGGATTTGCCCCATACCTTCCTCCAGTTGAGGAGGGTGCAAATTCTGCGTTGAAGAGAGCATTTGAGGCCTTGAACACTCATCTTGCCTCCAATACTTACCTTGTTGGCCATTCTGTTACCCTTGCTGACATCATAACAACATGCAACTTGTATTTAGGATTCAGCCAGCTCTTAGTTAAGAGCTTCACCTCTGAGTTCCCTCACGTTGAACGATACTTTTGGACCTTGGTCAACCAGCCTAACTTCAGAAAGATTCTAGGTCAGGTTAAGCAAACTGAGGCTGTTCCACCTATTCCATCGGCAAAGAAGCCTTCCCAGTCTAAGGAATCTAAGCCCAAGCCTAAGGATGAACCAAAGAAAGTGGCTAAACCAGAGCCCAAAGAAGTAGCAGAACCAGAGGAGGAGGCACCCAAGCCCAAGCCCAAGAATCCTCTTGATCTTCTTCCTCCAAGCAAGATGATCTTGGATGAGTGGAAAAGACTCTACTCAAACACCAAGACCAACTTCCGGGAGGTTGCAATCAAAGGATTTTGGGACATGTACGATCCAGAGGGATATTCTCTGTGGTTCTGTGATTACAAATACAATGATGAGAACTCAGTTTCCTTTGTTACATTAAACAAGGTTGGTGGATTTCTTCAGAGGATGGACCTGGCTCGCAAGTATGCGTTTGGAAAGATGCTGGTGATTGGATCACAGGCACCATTTAAGGTGAAGGGGTTGTGGCTCTTCCGCGGCCAAGAGATTCCACAATTTGTGATTGATGAATGCTATGATATGGAGCTCTATGACTGGACCAAGGTTGATATCTCTGATGAAACTCAGAAAGAGCGCGTCAATCAGATGATCGAGGATTATGAACCATTTGAGGGAGAACCTCTTTTGGATGCTAAGTGCTTCAAGTGAGAAACAAAATTTTAGTCCCTAGTCAAAATGCTGATTTTTGTCGTGTGTCTTTTTCTTATGTCTTTGGTTTCTATCCTATTTCTGTTATAGCTGTTTTGGTTGGGATCTTCAACACTGAAACTTAATGCTTGATTTTGTTACACATTATCTTTTATGACTATAGCAAGACCAGTATACAAATTTATTTATCTGTGGATGTGTGTATGAATTTCAATATCCTCACGATACGCGTTTCGCGGGGATCAAAAATTAAAAAAATATATTTGAAGTAGCATTTTCAAAATAATGAGATTATGTAAATAGTTTTAAAAATATTGAATATTGTGTCA
>Glyma12g28670.1 sequence type=CDS gene model=Glyma12g28670 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTCTGATCCTGCATGCTACCAAAACAAACAAGAATGCCTTCAAGACTCTGATTGCGGCAGAGTACAGTGGCGTCCAAGTGGAATTGGCCCCTAATTTCGAGATGGGTGTCTCTAACAAAACTCCTGAATTTCTCAAGATGAATCCTATTGGAAAGGTTCCTGTTTTGGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCAATCGCTCGTTACGTTGCTCGACTAAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATAATGCCCACATTGACCAGTGGATTGATTTTTCATCCTTGGAGATCGATGCTAATCTCATGAAATTGCTCCTACCAAGACTTGGATTTGCCCCATACCTTCCTCCAGTTGAGGAGGGTGCAAATTCTGCGTTGAAGAGAGCATTTGAGGCCTTGAACACTCATCTTGCCTCCAATACTTACCTTGTTGGCCATTCTGTTACCCTTGCTGACATCATAACAACATGCAACTTGTATTTAGGATTCAGCCAGCTCTTAGTTAAGAGCTTCACCTCTGAGTTCCCTCACGTTGAACGATACTTTTGGACCTTGGTCAACCAGCCTAACTTCAGAAAGATTCTAGGTCAGGTTAAGCAAACTGAGGCTGTTCCACCTATTCCATCGGCAAAGAAGCCTTCCCAGTCTAAGGAATCTAAGCCCAAGCCTAAGGATGAACCAAAGAAAGTGGCTAAACCAGAGCCCAAAGAAGTAGCAGAACCAGAGGAGGAGGCACCCAAGCCCAAGCCCAAGAATCCTCTTGATCTTCTTCCTCCAAGCAAGATGATCTTGGATGAGTGGAAAAGACTCTACTCAAACACCAAGACCAACTTCCGGGAGGTTGCAATCAAAGGATTTTGGGACATGTACGATCCAGAGGGATATTCTCTGTGGTTCTGTGATTACAAATACAATGATGAGAACTCAGTTTCCTTTGTTACATTAAACAAGGTTGGTGGATTTCTTCAGAGGATGGACCTGGCTCGCAAGTATGCGTTTGGAAAGATGCTGGTGATTGGATCACAGGCACCATTTAAGGTGAAGGGGTTGTGGCTCTTCCGCGGCCAAGAGATTCCACAATTTGTGATTGATGAATGCTATGATATGGAGCTCTATGACTGGACCAAGGTTGATATCTCTGATGAAACTCAGAAAGAGCGCGTCAATCAGATGATCGAGGATTATGAACCATTTGAGGGAGAACCTCTTTTGGATGCTAAGTGCTTCAAGTGA >Glyma12g28670.2 sequence type=CDS gene model=Glyma12g28670 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAATTGCTCCTACCAAGACTTGGATTTGCCCCATACCTTCCTCCAGTTGAGGAGGGTGCAAATTCTGCGTTGAAGAGAGCATTTGAGGCCTTGAACACTCATCTTGCCTCCAATACTTACCTTGTTGGCCATTCTGTTACCCTTGCTGACATCATAACAACATGCAACTTGTATTTAGGATTCAGCCAGCTCTTAGTTAAGAGCTTCACCTCTGAGTTCCCTCACGTTGAACGATACTTTTGGACCTTGGTCAACCAGCCTAACTTCAGAAAGATTCTAGGTCAGGTTAAGCAAACTGAGGCTGTTCCACCTATTCCATCGGCAAAGAAGCCTTCCCAGTCTAAGGAATCTAAGCCCAAGCCTAAGGATGAACCAAAGAAAGTGGCTAAACCAGAGCCCAAAGAAGTAGCAGAACCAGAGGAGGAGGCACCCAAGCCCAAGCCCAAGAATCCTCTTGATCTTCTTCCTCCAAGCAAGATGATCTTGGATGAGTGGAAAAGACTCTACTCAAACACCAAGACCAACTTCCGGGAGGTTGCAATCAAAGGATTTTGGGACATGTACGATCCAGAGGGATATTCTCTGTGGTTCTGTGATTACAAATACAATGATGAGAACTCAGTTTCCTTTGTTACATTAAACAAGGTTGGTGGATTTCTTCAGAGGATGGACCTGGCTCGCAAGTATGCGTTTGGAAAGATGCTGGTGATTGGATCACAGGCACCATTTAAGGTGAAGGGGTTGTGGCTCTTCCGCGGCCAAGAGATTCCACAATTTGTGATTGATGAATGCTATGATATGGAGCTCTATGACTGGACCAAGGTTGATATCTCTGATGAAACTCAGAAAGAGCGCGTCAATCAGATGATCGAGGATTATGAACCATTTGAGGGAGAACCTCTTTTGGATGCTAAGTGCTTCAAGTGA
>Glyma12g28670.1 sequence type=predicted peptide gene model=Glyma12g28670 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MALILHATKTNKNAFKTLIAAEYSGVQVELAPNFEMGVSNKTPEFLKMNPIGKVPVLETPDGPVFESNAIARYVARLKGDNALFSSSAIDNAHIDQWIDFSSLEIDANLMKLLLPRLGFAPYLPPVEEGANSALKRAFEALNTHLASNTYLVGHSVTLADIITTCNLYLGFSQLLVKSFTSEFPHVERYFWTLVNQPNFRKILGQVKQTEAVPPIPSAKKPSQSKESKPKPKDEPKKVAKPEPKEVAEPEEEAPKPKPKNPLDLLPPSKMILDEWKRLYSNTKTNFREVAIKGFWDMYDPEGYSLWFCDYKYNDENSVSFVTLNKVGGFLQRMDLARKYAFGKMLVIGSQAPFKVKGLWLFRGQEIPQFVIDECYDMELYDWTKVDISDETQKERVNQMIEDYEPFEGEPLLDAKCFK* >Glyma12g28670.2 sequence type=predicted peptide gene model=Glyma12g28670 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKLLLPRLGFAPYLPPVEEGANSALKRAFEALNTHLASNTYLVGHSVTLADIITTCNLYLGFSQLLVKSFTSEFPHVERYFWTLVNQPNFRKILGQVKQTEAVPPIPSAKKPSQSKESKPKPKDEPKKVAKPEPKEVAEPEEEAPKPKPKNPLDLLPPSKMILDEWKRLYSNTKTNFREVAIKGFWDMYDPEGYSLWFCDYKYNDENSVSFVTLNKVGGFLQRMDLARKYAFGKMLVIGSQAPFKVKGLWLFRGQEIPQFVIDECYDMELYDWTKVDISDETQKERVNQMIEDYEPFEGEPLLDAKCFK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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