Glyma12g28670 - SoyBase

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Report for Sequence Feature Glyma12g28670

Feature Type:	gene_model
Chromosome:	Gm12
Start:	31999389
stop:	32001658
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma12g28670

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G09640	AT	Annotation by Michelle Graham. TAIR10: Translation elongation factor EF1B, gamma chain \| chr1:3120162-3122152 FORWARD LENGTH=414	SoyBase	E_val: 0	ISS
GO:0006414	GO-bp	Annotation by Michelle Graham. GO Biological Process: translational elongation	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005773	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuole	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0005853	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: eukaryotic translation elongation factor 1 complex	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0009506	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma	SoyBase	N/A	ISS
GO:0003746	GO-mf	Annotation by Michelle Graham. GO Molecular Function: translation elongation factor activity	SoyBase	N/A	ISS
KOG1627	KOG	Translation elongation factor EF-1 gamma	JGI		ISS
PTHR11260	Panther	GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING	JGI		ISS
PTHR11260:SF7	Panther	ELONGATION FACTOR 1-GAMMA	JGI		ISS
PF00043	PFAM	Glutathione S-transferase, C-terminal domain	JGI		ISS
PF00647	PFAM	Elongation factor 1 gamma, conserved domain	JGI		ISS
PF02798	PFAM	Glutathione S-transferase, N-terminal domain	JGI		ISS
UniRef100_I1LTA4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1LTA4_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q1SL16	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Elongation factor 1, gamma chain; Glutathione S-transferase, C-terminal; Thioredoxin-like fold n=1 Tax=Medicago truncatula RepID=Q1SL16_MEDTR	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma12g28670

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma12g28670

Paralog	Evidence	Comments
Glyma16g00360	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma12g28670 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.12g165500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma12g28670

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma12g28670

Limit To All Plant Sequences

>Glyma12g28670.2   sequence type=transcript   gene model=Glyma12g28670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GCCAAAACAGGTTGAAATACTGAGTTTGATGGTTTGTATTTGGGCTTATGAAAACAAAGGTTGGGTCCAGCCCTTTTAGGGTTTCGTCAGAGTTATAAAATACCTAATTCATTTCCTCTGTGCCGCTTTCTTCTTCATCGTCGTCGTGGTCGTGTCGCAGCAAAACCAAGCCACCCACTAACTTGTTTGGTCCAAGACATGGCTCTGGTGAGTTTCCTTTCTATTCTTTTTGTTTTTCGGCAAATAACAAATTTTTATATGAATCTGAATGGAAATTGGTGTAGATCCTGCATGCTACCAAAACAAACAAGAATGCCTTCAAGACTCTGATTGCGGCAGAGTACAGTGGCGTCCAAGTGGAATTGGCCCCTAATTTCGAGATGGGTGTCTCTAACAAAACTCCTGAATTTCTCAAGATGAATCCTATTGGAAAGGTTCCTGTTTTGGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCAATCGCTCGTTACGGTATGTTTCTTTCTTTCTTTCCATTTCACGCTTTTCCTTTTTTAATTTTATCTTCATTTTTGTGATTTTCTCTTTTCAGTTGCTCGACTAAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATAATGCCCACATTGACCAGTGGATTGATTTTTCATCCTTGGAGATCGATGCTAATCTCATGAAATTGCTCCTACCAAGACTTGGATTTGCCCCATACCTTCCTCCAGTTGAGGAGGGTGCAAATTCTGCGTTGAAGAGAGCATTTGAGGCCTTGAACACTCATCTTGCCTCCAATACTTACCTTGTTGGCCATTCTGTTACCCTTGCTGACATCATAACAACATGCAACTTGTATTTAGGATTCAGCCAGCTCTTAGTTAAGAGCTTCACCTCTGAGTTCCCTCACGTTGAACGATACTTTTGGACCTTGGTCAACCAGCCTAACTTCAGAAAGATTCTAGGTCAGGTTAAGCAAACTGAGGCTGTTCCACCTATTCCATCGGCAAAGAAGCCTTCCCAGTCTAAGGAATCTAAGCCCAAGCCTAAGGATGAACCAAAGAAAGTGGCTAAACCAGAGCCCAAAGAAGTAGCAGAACCAGAGGAGGAGGCACCCAAGCCCAAGCCCAAGAATCCTCTTGATCTTCTTCCTCCAAGCAAGATGATCTTGGATGAGTGGAAAAGACTCTACTCAAACACCAAGACCAACTTCCGGGAGGTTGCAATCAAAGGATTTTGGGACATGTACGATCCAGAGGGATATTCTCTGTGGTTCTGTGATTACAAATACAATGATGAGAACTCAGTTTCCTTTGTTACATTAAACAAGGTTGGTGGATTTCTTCAGAGGATGGACCTGGCTCGCAAGTATGCGTTTGGAAAGATGCTGGTGATTGGATCACAGGCACCATTTAAGGTGAAGGGGTTGTGGCTCTTCCGCGGCCAAGAGATTCCACAATTTGTGATTGATGAATGCTATGATATGGAGCTCTATGACTGGACCAAGGTTGATATCTCTGATGAAACTCAGAAAGAGCGCGTCAATCAGATGATCGAGGATTATGAACCATTTGAGGGAGAACCTCTTTTGGATGCTAAGTGCTTCAAGTGAGAAACAAAATTTTAGTCCCTAGTCAAAATGCTGATTTTTGTCGTGTGTCTTTTTCTTATGTCTTTGGTTTCTATCCTATTTCTGTTATAGCTGTTTTGGTTGGGATCTTCAACACTGAAACTTAATGCTTGATTTTGTTACACATTATCTTTTATGACTATAGCAAGACCAGTATACAAATTTATTTATCTGTGGATGTGTGTATGAATTTCAATATCCTCACGATACGCGTTTCGCGGGGATCAAAAATTAAAAAAATATATTTGAAGTAGCATTTTCAAAATAATGAGATTATGTAAATAGTTTTAAAAATATTGAATATTGTGTCA

Coding sequences of Glyma12g28670

Limit To All Plant Sequences

>Glyma12g28670.1   sequence type=CDS   gene model=Glyma12g28670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTCTGATCCTGCATGCTACCAAAACAAACAAGAATGCCTTCAAGACTCTGATTGCGGCAGAGTACAGTGGCGTCCAAGTGGAATTGGCCCCTAATTTCGAGATGGGTGTCTCTAACAAAACTCCTGAATTTCTCAAGATGAATCCTATTGGAAAGGTTCCTGTTTTGGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCAATCGCTCGTTACGTTGCTCGACTAAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATAATGCCCACATTGACCAGTGGATTGATTTTTCATCCTTGGAGATCGATGCTAATCTCATGAAATTGCTCCTACCAAGACTTGGATTTGCCCCATACCTTCCTCCAGTTGAGGAGGGTGCAAATTCTGCGTTGAAGAGAGCATTTGAGGCCTTGAACACTCATCTTGCCTCCAATACTTACCTTGTTGGCCATTCTGTTACCCTTGCTGACATCATAACAACATGCAACTTGTATTTAGGATTCAGCCAGCTCTTAGTTAAGAGCTTCACCTCTGAGTTCCCTCACGTTGAACGATACTTTTGGACCTTGGTCAACCAGCCTAACTTCAGAAAGATTCTAGGTCAGGTTAAGCAAACTGAGGCTGTTCCACCTATTCCATCGGCAAAGAAGCCTTCCCAGTCTAAGGAATCTAAGCCCAAGCCTAAGGATGAACCAAAGAAAGTGGCTAAACCAGAGCCCAAAGAAGTAGCAGAACCAGAGGAGGAGGCACCCAAGCCCAAGCCCAAGAATCCTCTTGATCTTCTTCCTCCAAGCAAGATGATCTTGGATGAGTGGAAAAGACTCTACTCAAACACCAAGACCAACTTCCGGGAGGTTGCAATCAAAGGATTTTGGGACATGTACGATCCAGAGGGATATTCTCTGTGGTTCTGTGATTACAAATACAATGATGAGAACTCAGTTTCCTTTGTTACATTAAACAAGGTTGGTGGATTTCTTCAGAGGATGGACCTGGCTCGCAAGTATGCGTTTGGAAAGATGCTGGTGATTGGATCACAGGCACCATTTAAGGTGAAGGGGTTGTGGCTCTTCCGCGGCCAAGAGATTCCACAATTTGTGATTGATGAATGCTATGATATGGAGCTCTATGACTGGACCAAGGTTGATATCTCTGATGAAACTCAGAAAGAGCGCGTCAATCAGATGATCGAGGATTATGAACCATTTGAGGGAGAACCTCTTTTGGATGCTAAGTGCTTCAAGTGA

>Glyma12g28670.2   sequence type=CDS   gene model=Glyma12g28670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAATTGCTCCTACCAAGACTTGGATTTGCCCCATACCTTCCTCCAGTTGAGGAGGGTGCAAATTCTGCGTTGAAGAGAGCATTTGAGGCCTTGAACACTCATCTTGCCTCCAATACTTACCTTGTTGGCCATTCTGTTACCCTTGCTGACATCATAACAACATGCAACTTGTATTTAGGATTCAGCCAGCTCTTAGTTAAGAGCTTCACCTCTGAGTTCCCTCACGTTGAACGATACTTTTGGACCTTGGTCAACCAGCCTAACTTCAGAAAGATTCTAGGTCAGGTTAAGCAAACTGAGGCTGTTCCACCTATTCCATCGGCAAAGAAGCCTTCCCAGTCTAAGGAATCTAAGCCCAAGCCTAAGGATGAACCAAAGAAAGTGGCTAAACCAGAGCCCAAAGAAGTAGCAGAACCAGAGGAGGAGGCACCCAAGCCCAAGCCCAAGAATCCTCTTGATCTTCTTCCTCCAAGCAAGATGATCTTGGATGAGTGGAAAAGACTCTACTCAAACACCAAGACCAACTTCCGGGAGGTTGCAATCAAAGGATTTTGGGACATGTACGATCCAGAGGGATATTCTCTGTGGTTCTGTGATTACAAATACAATGATGAGAACTCAGTTTCCTTTGTTACATTAAACAAGGTTGGTGGATTTCTTCAGAGGATGGACCTGGCTCGCAAGTATGCGTTTGGAAAGATGCTGGTGATTGGATCACAGGCACCATTTAAGGTGAAGGGGTTGTGGCTCTTCCGCGGCCAAGAGATTCCACAATTTGTGATTGATGAATGCTATGATATGGAGCTCTATGACTGGACCAAGGTTGATATCTCTGATGAAACTCAGAAAGAGCGCGTCAATCAGATGATCGAGGATTATGAACCATTTGAGGGAGAACCTCTTTTGGATGCTAAGTGCTTCAAGTGA

Predicted protein sequences of Glyma12g28670

Limit To All Plant Sequences

>Glyma12g28670.1   sequence type=predicted peptide   gene model=Glyma12g28670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MALILHATKTNKNAFKTLIAAEYSGVQVELAPNFEMGVSNKTPEFLKMNPIGKVPVLETPDGPVFESNAIARYVARLKGDNALFSSSAIDNAHIDQWIDFSSLEIDANLMKLLLPRLGFAPYLPPVEEGANSALKRAFEALNTHLASNTYLVGHSVTLADIITTCNLYLGFSQLLVKSFTSEFPHVERYFWTLVNQPNFRKILGQVKQTEAVPPIPSAKKPSQSKESKPKPKDEPKKVAKPEPKEVAEPEEEAPKPKPKNPLDLLPPSKMILDEWKRLYSNTKTNFREVAIKGFWDMYDPEGYSLWFCDYKYNDENSVSFVTLNKVGGFLQRMDLARKYAFGKMLVIGSQAPFKVKGLWLFRGQEIPQFVIDECYDMELYDWTKVDISDETQKERVNQMIEDYEPFEGEPLLDAKCFK*

>Glyma12g28670.2   sequence type=predicted peptide   gene model=Glyma12g28670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKLLLPRLGFAPYLPPVEEGANSALKRAFEALNTHLASNTYLVGHSVTLADIITTCNLYLGFSQLLVKSFTSEFPHVERYFWTLVNQPNFRKILGQVKQTEAVPPIPSAKKPSQSKESKPKPKDEPKKVAKPEPKEVAEPEEEAPKPKPKNPLDLLPPSKMILDEWKRLYSNTKTNFREVAIKGFWDMYDPEGYSLWFCDYKYNDENSVSFVTLNKVGGFLQRMDLARKYAFGKMLVIGSQAPFKVKGLWLFRGQEIPQFVIDECYDMELYDWTKVDISDETQKERVNQMIEDYEPFEGEPLLDAKCFK*

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