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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G11730 | AT | Annotation by Michelle Graham. TAIR10: Ras-related small GTP-binding family protein | chr3:3709490-3711397 REVERSE LENGTH=205 | SoyBase | E_val: 4.00E-122 | ISS |
| GO:0006888 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ER to Golgi vesicle-mediated transport | SoyBase | N/A | ISS |
| GO:0007264 | GO-bp | Annotation by Michelle Graham. GO Biological Process: small GTPase mediated signal transduction | SoyBase | N/A | ISS |
| GO:0015031 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein transport | SoyBase | N/A | ISS |
| GO:0000139 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: Golgi membrane | SoyBase | N/A | ISS |
| GO:0005794 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0032588 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: trans-Golgi network membrane | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| GO:0005525 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: GTP binding | SoyBase | N/A | ISS |
| GO:0030742 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: GTP-dependent protein binding | SoyBase | N/A | ISS |
| GO:0080115 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: myosin XI tail binding | SoyBase | N/A | ISS |
| KOG0084 | KOG | GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins | JGI | ISS | |
| PTHR24073 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR24073:SF227 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF00071 | PFAM | Ras family | JGI | ISS | |
| UniRef100_Q43462 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Rab7p protein n=1 Tax=Glycine max RepID=Q43462_SOYBN | SoyBase | E_val: 8.00E-146 | ISS |
| UniRef100_Q43462 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Rab7p protein n=1 Tax=Glycine max RepID=Q43462_SOYBN | SoyBase | E_val: 8.00E-146 | ISS |
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Glyma12g28655 not represented in the dataset |
Glyma12g28655 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma16g00340 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.12g165300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma12g28655.2 sequence type=transcript gene model=Glyma12g28655 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATAATAAGCGAGGTAAAACACTTCGAGCGGCGGGGCAGGGGCAGAGTTGATTGCAGTTGAGAGAGTTGTAATGAGTAACGAATACGATTATCTGTTCAAGCTTCTCCTAATCGGCGACTCTTCCGTTGGAAAATCCTGCTTGCTTCTCAGATTCGCTAAAATCAGAACCGTGGAGCTGGAAGGAAAAACCGTCAAGCTGCAGATTTGGGATACAGCTGGACAGGAGCGATTCAGGACTATAACAAGCAGTTACTATAGAGGAGCACATGGAATTATTATTGTCTATGATGTTACTGAGATGGAAAGCTTTAACAATGTCAAGCAGTGGTTGAATGAGATTGATAGATATGCAAATGACACTGTATGCAAGCTTCTTGTGGGGAATAAATCCGATCTAGTTGATAACAAGGTTGTTGACTCGCTAACAGCCAAGGCATTTGCAGATGAGCTTGGTATCCCTTTCCTTGAGACAAGTGCTAAAGACTCAATCAATGTGGAGCAGGCTTTCTTGACCATGGCAGCAGAGATTAAGAAGAAGATGGGAAGCCAAACAACTACTGGTAAGTCGGCAGAAAGTGTTCAAATGAAGGGGCAACCAATCCCACAGAAGAGCAACTGCTGTGGTTAGGTTCTATTCTAGTTCTACTTTCTGTTATATCAAAATAGGGAGACTCTGTTATGATATGGATGTTTCAGTAACTCTTGAAATATCACCTATCATCTATTTAAATCCTTGGATAATATTATTCTGAATCCCCTGATGGCTTCCCATGTTTAAAATGAAAGGGATGCAATTTTTCACATGCATCTTATATTAGAAACCTGCGCGCTTTAGCCTGACATTATGAAAAGGAATGTTCAGACCAAAAAGGATATCATAATGTCCATCATCAACAACTTTCAACTGTACATAGGGGGGAATTGTTGGCCACATTAGTAACATTCTTCGTGGCCGTAATATCACTGTTTTAATCCATTACAGTTACAGAAGGAGGTAGCCAATTCCTGCAGTCGGAAAAGTAATTGTAGATTCCTAAACTCATAAACCAATGGCTTAAAGTTTTTTAGCTGATTTATATTGTAATGTATGAAAAAATAAAATTAACGGCGGAGATTCTGTGGAGTTACTTTTCTGACGACAGGGATTTGGATCTCGTGTTTAGCCACTGGATTCATTCCAAATCTCTGAAGAAAATTAAACGATTTGAGTCCACATATACTCCACATTATCATATCTTAACAAGCACGTGTATGCTATAAATATATACTTTCCAGAGAAA >Glyma12g28655.3 sequence type=transcript gene model=Glyma12g28655 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATAATAAGCGAGGTAAAACACTTCGAGCGGCGGGGCAGGGGCAGAGTTGATTGCAGTTGAGAGAGTTGTAATGAGTAACGAATACGATTATCTGTTCAAGCTTCTCCTAATCGGCGACTCTTCCGTTGGAAAATCCTGCTTGCTTCTCAGATTCGCTGATGACTCCTACGTCGACAGCTACATAAGTACCATTGGAGTTGATTTCAAAATCAGAACCGTGGAGCTGGAAGGAAAAACCGTCAAGCTGCAGATTTGGGATACAGCTGGACAGGAGCGATTCAGGACTATAACAAGCAGTTACTATAGAGGAGCACATGGAATTATTATTGTCTATGATGTTACTGAGATGGAAAGCTTTAACAATGTCAAGCAGTGGTTGAATGAGATTGATAGATATGCAAATGACACTGTATGCAAGCTTCTTGTGGGGAATAAATCCGATCTAGTTGATAACAAGGTTGTTGACTCGCTAACAGCCAAGGCATTTGCAGATGAGCTTGGTATCCCTTTCCTTGAGACAAGTGCTAAAGACTCAATCAATGTGGAGCAGGCTTTCTTGACCATGGCAGCAGAGATTAAGAAGAAGTATCTAATAATTCTAGCTTCCCCTGTTCTCATTTAGAATCATTATTTAATCACAAATATTAATCAGTGTCATGAATTTTCTTTTTCTATATCGAGTTTTTCAGCTTGTTTAAAATTGAAATACTAACAGTAGGTCATGACAATTTTGTGCCATATTCTTTTCTTTTTTATATGACAATGTTATTGTCTGCAATCGGATGATCTGAGGAATAATGGCTTTTGATAAAAAGAAAAAGAAACAGAATATACATCTTGAGCTAAATTTTCATAATTAAGATTTTGATGATTTACAGATAATGTGCCAATATTTATTCTTTAAGAAGTTTAGATTTATTTTGTGGAGTGTTAGTTTTATAATCCATTACTTGATTCATGCATAAGACAAGTAAGTCACTTAGAGATGTTTTGAACTTGTGTGCAGGATGGGAAGCCAAACAACTACTGGTAAGTCGGCAGAAAGTGTTCAAATGAAGGGGCAACCAATCCCACAGAAGAGCAACTGCTGTGGTTAGGTTCTATTCTAGTTCTACTTTCTGTTATATCAAAATAGGGAGACTCTGTTATGATATGGATGTTTCAGTAACTCTTGAAATATCACCTATCATCTATTTAAATCCTTGGATAATATTATTCTGAATCCCCTGATGGCTTCCCATGTTTAAAATGAAAGGGATGCAATTTTTCACATGCATCTTATATTAGAAACCTGCGCGCTTTAGCCTGACATTATGAAAAGGAATGTTCAGACCAAAAAGGATATCATAATGTCCATCATCAACAACTTTCAACTGTACATAGGGGGGAATTGTTGGCCACATTAGTAACATTCTTCGTGGCCGTAATATCACTGTTTTAATCCATTACAGTTACAGAAGGAGGTAGCCAATTCCTGCAGTCGGAAAAGTAATTGTAGATTCCTAAACTCATAAACCAATGGCTTAAAGTTTTTTAGCTGATTTATATTGTAATGTATGAAAAAATAAAATTAACGGCGGAGATTCTGTGGAGTTACTTTTCTGACGACAGGGATTTGGATCTCGTGTTTAGCCACTGGATTCATTCCAAATCTCTGAAGAAAATTAAACGATTTGAGTCCACATATACTCCACATTATCATATCTTAACAAGCACGTGTATGCTATAAATATATACTTTCCAGAGAAA
>Glyma12g28655.1 sequence type=CDS gene model=Glyma12g28655 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGTAACGAATACGATTATCTGTTCAAGCTTCTCCTAATCGGCGACTCTTCCGTTGGAAAATCCTGCTTGCTTCTCAGATTCGCTGATGACTCCTACGTCGACAGCTACATAAGTACCATTGGAGTTGATTTCAAAATCAGAACCGTGGAGCTGGAAGGAAAAACCGTCAAGCTGCAGATTTGGGATACAGCTGGACAGGAGCGATTCAGGACTATAACAAGCAGTTACTATAGAGGAGCACATGGAATTATTATTGTCTATGATGTTACTGAGATGGAAAGCTTTAACAATGTCAAGCAGTGGTTGAATGAGATTGATAGATATGCAAATGACACTGTATGCAAGCTTCTTGTGGGGAATAAATCCGATCTAGTTGATAACAAGGTTGTTGACTCGCTAACAGCCAAGGCATTTGCAGATGAGCTTGGTATCCCTTTCCTTGAGACAAGTGCTAAAGACTCAATCAATGTGGAGCAGGCTTTCTTGACCATGGCAGCAGAGATTAAGAAGAAGATGGGAAGCCAAACAACTACTGGTAAGTCGGCAGAAAGTGTTCAAATGAAGGGGCAACCAATCCCACAGAAGAGCAACTGCTGTGGTTAG >Glyma12g28655.2 sequence type=CDS gene model=Glyma12g28655 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGTAACGAATACGATTATCTGTTCAAGCTTCTCCTAATCGGCGACTCTTCCGTTGGAAAATCCTGCTTGCTTCTCAGATTCGCTAAAATCAGAACCGTGGAGCTGGAAGGAAAAACCGTCAAGCTGCAGATTTGGGATACAGCTGGACAGGAGCGATTCAGGACTATAACAAGCAGTTACTATAGAGGAGCACATGGAATTATTATTGTCTATGATGTTACTGAGATGGAAAGCTTTAACAATGTCAAGCAGTGGTTGAATGAGATTGATAGATATGCAAATGACACTGTATGCAAGCTTCTTGTGGGGAATAAATCCGATCTAGTTGATAACAAGGTTGTTGACTCGCTAACAGCCAAGGCATTTGCAGATGAGCTTGGTATCCCTTTCCTTGAGACAAGTGCTAAAGACTCAATCAATGTGGAGCAGGCTTTCTTGACCATGGCAGCAGAGATTAAGAAGAAGATGGGAAGCCAAACAACTACTGGTAAGTCGGCAGAAAGTGTTCAAATGAAGGGGCAACCAATCCCACAGAAGAGCAACTGCTGTGGTTAG >Glyma12g28655.3 sequence type=CDS gene model=Glyma12g28655 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGTAACGAATACGATTATCTGTTCAAGCTTCTCCTAATCGGCGACTCTTCCGTTGGAAAATCCTGCTTGCTTCTCAGATTCGCTGATGACTCCTACGTCGACAGCTACATAAGTACCATTGGAGTTGATTTCAAAATCAGAACCGTGGAGCTGGAAGGAAAAACCGTCAAGCTGCAGATTTGGGATACAGCTGGACAGGAGCGATTCAGGACTATAACAAGCAGTTACTATAGAGGAGCACATGGAATTATTATTGTCTATGATGTTACTGAGATGGAAAGCTTTAACAATGTCAAGCAGTGGTTGAATGAGATTGATAGATATGCAAATGACACTGTATGCAAGCTTCTTGTGGGGAATAAATCCGATCTAGTTGATAACAAGGTTGTTGACTCGCTAACAGCCAAGGCATTTGCAGATGAGCTTGGTATCCCTTTCCTTGAGACAAGTGCTAAAGACTCAATCAATGTGGAGCAGGCTTTCTTGACCATGGCAGCAGAGATTAAGAAGAAGTATCTAATAATTCTAGCTTCCCCTGTTCTCATTTAG
>Glyma12g28655.1 sequence type=predicted peptide gene model=Glyma12g28655 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELEGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKQWLNEIDRYANDTVCKLLVGNKSDLVDNKVVDSLTAKAFADELGIPFLETSAKDSINVEQAFLTMAAEIKKKMGSQTTTGKSAESVQMKGQPIPQKSNCCG* >Glyma12g28655.2 sequence type=predicted peptide gene model=Glyma12g28655 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSNEYDYLFKLLLIGDSSVGKSCLLLRFAKIRTVELEGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKQWLNEIDRYANDTVCKLLVGNKSDLVDNKVVDSLTAKAFADELGIPFLETSAKDSINVEQAFLTMAAEIKKKMGSQTTTGKSAESVQMKGQPIPQKSNCCG* >Glyma12g28655.3 sequence type=predicted peptide gene model=Glyma12g28655 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELEGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKQWLNEIDRYANDTVCKLLVGNKSDLVDNKVVDSLTAKAFADELGIPFLETSAKDSINVEQAFLTMAAEIKKKYLIILASPVLI*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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