Glyma12g28630 - SoyBase

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Report for Sequence Feature Glyma12g28630

Feature Type:	gene_model
Chromosome:	Gm12
Start:	31969684
stop:	31970673
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma12g28630

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G54960	AT	Annotation by Michelle Graham. TAIR10: NPK1-related protein kinase 2 \| chr1:20500058-20503587 FORWARD LENGTH=606	SoyBase	E_val: 4.00E-67	ISS
GO:0000910	GO-bp	Annotation by Michelle Graham. GO Biological Process: cytokinesis	SoyBase	N/A	ISS
GO:0006468	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein phosphorylation	SoyBase	N/A	ISS
GO:0043622	GO-bp	Annotation by Michelle Graham. GO Biological Process: cortical microtubule organization	SoyBase	N/A	ISS
GO:0005575	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cellular component	SoyBase	N/A	ISS
GO:0004672	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein kinase activity	SoyBase	N/A	ISS
GO:0004674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity	SoyBase	N/A	ISS
GO:0004709	GO-mf	Annotation by Michelle Graham. GO Molecular Function: MAP kinase kinase kinase activity	SoyBase	N/A	ISS
GO:0004713	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein tyrosine kinase activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016301	GO-mf	Annotation by Michelle Graham. GO Molecular Function: kinase activity	SoyBase	N/A	ISS
GO:0016772	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups	SoyBase	N/A	ISS
KOG0198	KOG	MEKK and related serine/threonine protein kinases	JGI		ISS
PTHR24361	Panther	MITOGEN-ACTIVATED KINASE KINASE KINASE	JGI		ISS
PTHR24361:SF58	Panther		JGI		ISS
PF00069	PFAM	Protein kinase domain	JGI		ISS
UniRef100_G7IL61	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Mitogen-activated protein kinase kinase kinase n=2 Tax=Medicago truncatula RepID=G7IL61_MEDTR	SoyBase	E_val: 7.00E-130	ISS
UniRef100_I1LT96	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LT96_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma12g28630

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma12g28630

Paralog	Evidence	Comments
Glyma16g00300	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma12g28630 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.12g164900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma12g28630

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma12g28630

Limit To All Plant Sequences

>Glyma12g28630.1   sequence type=CDS   gene model=Glyma12g28630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTGCAAAACGGCAACAACCCAGTGAATGGGTGAAAGGTAAACTTGTAGGGTGTGGATCTTTTGGCAATGTCCATTTGGCAATGAACAAAACCACCGGTGGGCTTTTTGTTGTGAAATCACCACATTCCAGGGCTGAACGCCATGCTTTGGATAAAGAGGTGAAAATCCTAAACACTTTAAATTCATCACCATACATTGTCCAATGTTTGGGGACCGAGGAGGAGGAGGAAGACCAAGGCAAGCTCAATGTTTTTATGGAGTACATGGCCGGGGGTAATTTGGCAGACATGGTGCACAAGTTTGGTGGCTCATTAGATGAAGAGGTGGTTCGGGTGTATACCAGGGAAATTCTTCATGGGTTAGAGCATCTTCATCAACATGGAATTGTGCACTGCGACCTCAAGTGCAAGAACGTGCTTTTGGGATCATCTGGCAACATCAAGTTGGCGGATTTTGGATGTGCAAAAAGGGTAAAGGAGGACTCAGCAAATTGTGGTGGGACTCCTCTGTGGATGGCTCCTGAAGTATTGAGGAACGAGTCTGTGGATTTTGCTGCGGATATATGGTCCTTGGGATGTACAGTTATTGAGATGGCTACTGGCACACCCCCTTGGGCTCATCAGCTTTCAAATCCAATAACTGCTGTGCTCATGATTGCCCACGGCGATGGGATACCTCACTTTCCACCCCATTTCTCCAAGGAGGGTTTCGATTTCTTGAGCAGGTGCTTCCAGAGACAACCCAATAAGAGGTCTACGGTTCAGGACTTACTTACCCATCCTTTTGTTTCAACGCCATCTTCTCAACAACAATATGCACCTTCCTCCTCTCCGTCCACAGTCAAAGAAACTTCAAAGGAGAATCGTTCTTCAATCACAAACACATTTGCATCTCATCATGATGACCCCAAAGGAATACCGGTATGTAAACCCCAAGACATTGCATTGGGCTCATCAGGGAATTGGATTACTGTTAGATCAGGCTGA

Predicted protein sequences of Glyma12g28630

Limit To All Plant Sequences

>Glyma12g28630.1   sequence type=predicted peptide   gene model=Glyma12g28630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGAKRQQPSEWVKGKLVGCGSFGNVHLAMNKTTGGLFVVKSPHSRAERHALDKEVKILNTLNSSPYIVQCLGTEEEEEDQGKLNVFMEYMAGGNLADMVHKFGGSLDEEVVRVYTREILHGLEHLHQHGIVHCDLKCKNVLLGSSGNIKLADFGCAKRVKEDSANCGGTPLWMAPEVLRNESVDFAADIWSLGCTVIEMATGTPPWAHQLSNPITAVLMIAHGDGIPHFPPHFSKEGFDFLSRCFQRQPNKRSTVQDLLTHPFVSTPSSQQQYAPSSSPSTVKETSKENRSSITNTFASHHDDPKGIPVCKPQDIALGSSGNWITVRSG*

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