SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G55540 | AT | Annotation by Michelle Graham. TAIR10: Nuclear pore complex protein | chr1:20734759-20743049 REVERSE LENGTH=1816 | SoyBase | E_val: 5.00E-17 | ISS |
| GO:0007062 | GO-bp | Annotation by Michelle Graham. GO Biological Process: sister chromatid cohesion | SoyBase | N/A | ISS |
| GO:0007131 | GO-bp | Annotation by Michelle Graham. GO Biological Process: reciprocal meiotic recombination | SoyBase | N/A | ISS |
| GO:0009790 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryo development | SoyBase | N/A | ISS |
| GO:0009793 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy | SoyBase | N/A | ISS |
| GO:0010070 | GO-bp | Annotation by Michelle Graham. GO Biological Process: zygote asymmetric cell division | SoyBase | N/A | ISS |
| GO:0033044 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of chromosome organization | SoyBase | N/A | ISS |
| GO:0042138 | GO-bp | Annotation by Michelle Graham. GO Biological Process: meiotic DNA double-strand break formation | SoyBase | N/A | ISS |
| GO:0045132 | GO-bp | Annotation by Michelle Graham. GO Biological Process: meiotic chromosome segregation | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| UniRef100_I1LT82 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1LT82_SOYBN | SoyBase | E_val: 2.00E-53 | ISS |
| UniRef100_Q9ZVV0 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: T5A14.5 protein n=1 Tax=Arabidopsis thaliana RepID=Q9ZVV0_ARATH | SoyBase | E_val: 2.00E-14 | ISS |
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Glyma12g28082 not represented in the dataset |
Glyma12g28082 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma12g28082.1 sequence type=CDS gene model=Glyma12g28082 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAAGGTTTTATGAAGACTCCTCCTAGTAAGATCTTATTTGCTGATTTGACTGCTAATAAAGATCAATCTAGGAGAAATCAAGCCAATGCAATGAAGAGTTGTGAACCAGAAACGGCTAGGAGGAGGAGAGACTCACTTGACCAGACAACAAATTCTGGTGCATTCTCTGGTGGCTTCAATGTTGTGGCTGCTGTTCCCGCACAAGCTCCAAGTGGGTTTGGGCAACCAACACAAATTGGATCAGGGCAACAGATTCTTGGTTCAGTTCTTGATGGTTTTGGACAATCAAGACAGCTTGGTAGTGGTTTTGCAGCTCCTGGTGGTTTTGGTAGTGGATTTGCCGGTAGTAATTCTACTAGTGGCTTTTCAAATGCTGCCATTGGTGGAGGGTTTGCTAAAATAGCATCCACAGGTGGAGGGTTTGCTGGTGTTGCATCCACTGGTGGCTTTACTGGTGCTGCTGCTCCTGACGATGGTTTTGGTGGAGCTGTTGCTACTGGTGGTGGTTTTGGCGGGGCTGTAACATCCCATTTTTCTATATATGAGCTGGTTCACGTGGTGGTTTTGGAGCATTTAGCAGCAAAGGAAGCGGTGGTTTTGGTGCTTTTGGTTCAGGTGGAGGCAGTAAACCACCTGAGCTGTTCACAAAGATGCGAAAGTAGTACAGTTAAAATGATTGGAAAGCTCAAGTTGAGTTTTTATTTTGAAACTCCACGAAGAAATTACGTCCTTGCAATATCTTGTAGAAAAGAAACGGGATAA
>Glyma12g28082.1 sequence type=predicted peptide gene model=Glyma12g28082 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKGFMKTPPSKILFADLTANKDQSRRNQANAMKSCEPETARRRRDSLDQTTNSGAFSGGFNVVAAVPAQAPSGFGQPTQIGSGQQILGSVLDGFGQSRQLGSGFAAPGGFGSGFAGSNSTSGFSNAAIGGGFAKIASTGGGFAGVASTGGFTGAAAPDDGFGGAVATGGGFGGAVTSHFSIYELVHVVVLEHLAAKEAVVLVLLVQVEAVNHLSCSQRCESSTVKMIGKLKLSFYFETPRRNYVLAISCRKETG*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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