Glyma12g27400 - SoyBase

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Report for Sequence Feature Glyma12g27400

Feature Type:	gene_model
Chromosome:	Gm12
Start:	30972798
stop:	30976762
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma12g27400

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G53900	AT	Annotation by Michelle Graham. TAIR10: Serine/threonine-protein kinase WNK (With No Lysine)-related \| chr5:21881375-21883133 REVERSE LENGTH=377	SoyBase	E_val: 3.00E-164	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0009736	GO-bp	Annotation by Michelle Graham. GO Biological Process: cytokinin mediated signaling pathway	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PTHR13902	Panther	SERINE/THREONINE-PROTEIN KINASE WNK (WITH NO LYSINE)-RELATED	JGI		ISS
PTHR13902:SF32	Panther	SUBFAMILY NOT NAMED	JGI		ISS
UniRef100_Q9FN36	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Gb\|AAF34833.1 n=2 Tax=Arabidopsis thaliana RepID=Q9FN36_ARATH	SoyBase	E_val: 1.00E-161	ISS
UniRef100_UPI000233D031	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233D031 related cluster n=1 Tax=unknown RepID=UPI000233D031	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma12g27400

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma12g27400

Paralog	Evidence	Comments
Glyma06g36190	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma12g27400 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.U024900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma12g27400

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma12g27400

Limit To All Plant Sequences

>Glyma12g27400.1   sequence type=CDS   gene model=Glyma12g27400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGGGCTCAGGAACAACAACAACAACAGATAGAAGCAAAGAAGCTGTTGGGATGATGGCCCTTCATGAGGCCCTCAGAAGTGTGTGTCTCAACTCAGATTGGACTTACTCTGTCTTCTGGACCATTCGTCCTCGCCCAAGAGTGAGAGGTGGCAATGGGTGCAAGGTTGGGGATGATAACGGCAGCTTGATGTTGATGTGGGAAGATGGGTTTTGCCGAGGAAGAGTTTCAGATTGTTTGGAAGAGATTGATGGAGAGGATCCTATCAGGAAATCTTTTAGCAAAATGTCCATTCAGTTATATAATTATGGAGAAGGGTTGATGGGAAAGGTTACATCTGATAAGTGCCACAAATGGGTCTTTAAAGAGCCTACGGAATGTGAGCCTAATATCTCCAACTACTGGCAGAGCTCCTTTGATGCTCTTCCTCCTGAATGGATAGATCAGTTTGAGTCAGGCATTCAGACAATCGCTGTGATTCAAGCTGGGCATGGCCTTCTGCAACTTGGTTCTTGCAAGATTATTCCAGAAGACCTCCATTTTGTGCTAAGAATGAGACACACTTTTGAATCTCTAGGCTATCAATCAGGGTTCTACCTCTCCCAACTCTTCTCTTCAACAAGGAACACATCCTCTTCCACTTCCCTTTCTTCAAAACCATCCTCCATTCCAACTAGGCCACCCCCTCCACTCCTCAACTGGGGTCAGAGACCACTTGGATCTTCCGCTTCTATGCTACCCTCTCCCACCTTTCAGCATGCAGCCAGAATGGGGTTCCCACAGGCCAAAGATGAGACCCATATGTTCCTCATGCCTCATGCATCAGAACATGCAAGAATGGGAGACATCATGGGGGAGCATGAGAATGACATAAAATGGCCAAATGGCTTATCCATCTTCAATGCACTCACTGGAAGATCTGATGATGCTAAACTCTTGTTCAATCAAGAGAGCTTGGGGGGCAAACCAAGTGATGATCACAATCACCACCACCACCACCACCACTCTCTCAACCCAAATAATCCCACCTCATCAGTGCAAAATGCTAATAGTGTGGCAAACCCAAATGAGTTCTTGAGCTTGGATAGCCACACTGAAGGAGGAGGGGCAAGGAAACTGGACAAGTTCAAGAGGTGCTTCACTCTACCTGCTAGAATGACTTCATCTTCATCTTCTACTTCAATGGATCACCATCAACAAGCAGGTGTGGAGTATAGGAATTCAGGAGGTAGTATGTACCAGGATGTCATGGAGACCTTTTTGGAGTGA

Predicted protein sequences of Glyma12g27400

Limit To All Plant Sequences

>Glyma12g27400.1   sequence type=predicted peptide   gene model=Glyma12g27400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVGSGTTTTTDRSKEAVGMMALHEALRSVCLNSDWTYSVFWTIRPRPRVRGGNGCKVGDDNGSLMLMWEDGFCRGRVSDCLEEIDGEDPIRKSFSKMSIQLYNYGEGLMGKVTSDKCHKWVFKEPTECEPNISNYWQSSFDALPPEWIDQFESGIQTIAVIQAGHGLLQLGSCKIIPEDLHFVLRMRHTFESLGYQSGFYLSQLFSSTRNTSSSTSLSSKPSSIPTRPPPPLLNWGQRPLGSSASMLPSPTFQHAARMGFPQAKDETHMFLMPHASEHARMGDIMGEHENDIKWPNGLSIFNALTGRSDDAKLLFNQESLGGKPSDDHNHHHHHHHSLNPNNPTSSVQNANSVANPNEFLSLDSHTEGGGARKLDKFKRCFTLPARMTSSSSSTSMDHHQQAGVEYRNSGGSMYQDVMETFLE*

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