Glyma12g27340 - SoyBase

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Report for Sequence Feature Glyma12g27340

Feature Type:	gene_model
Chromosome:	Gm12
Start:	30846229
stop:	30850517
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma12g27340

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G15260	AT	Annotation by Michelle Graham. TAIR10: Protein phosphatase 2C family protein \| chr3:5138842-5140242 FORWARD LENGTH=289	SoyBase	E_val: 3.00E-161	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0004722	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine phosphatase activity	SoyBase	N/A	ISS
KOG0698	KOG	Serine/threonine protein phosphatase	JGI		ISS
PTHR13832	Panther	PROTEIN PHOSPHATASE 2C	JGI		ISS
PTHR13832:SF144	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00481	PFAM	Protein phosphatase 2C	JGI		ISS
UniRef100_C6T9C9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein n=1 Tax=Glycine max RepID=C6T9C9_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q9ZPL8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Protein phosphatase type 2C n=1 Tax=Lotus japonicus RepID=Q9ZPL8_LOTJA	SoyBase	E_val: 1.00E-176	ISS

Expression Patterns of Glyma12g27340

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma12g27340

Paralog	Evidence	Comments
Glyma06g36150	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma12g27340 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.U025900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma12g27340

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma12g27340

Limit To All Plant Sequences

>Glyma12g27340.2   sequence type=transcript   gene model=Glyma12g27340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GCGTCTTCGTAATTGCGACGTACGCGGCATGGTATTGAGAAGTAGCAAAAAAAGTCGTGTCAACGCGACAATGATCCTCATCATCTCACACACAACACACTCGTCTTTCTCTTCTCACTTTTCAGTTCTGCCTTCTAACGAAATCCCTTCTATTCTATTCTTTCTCCACCTCTTCTCTCCCCTGTCTTCTTCTTAATTACCCTCCCTCATTGCGTGCACCCCCCAAAAAATAAGAAGATATACATAAAAATAAAACACACCCTCTACGTGTCCACACTCTCTGATCACAACACACCCGCTTAATTAAATCTCTATATATAAACCCCTTCAGGCACTCCACTATGACGGGCAAAGAAATTTTTCATAAGATGAAGGAAAAAGTTTTGGGATCATCTGATCCCGATTCAGGTAAAGGAAAGAGCAAGATGAAGAAGCACATAACTCATGGCTTTCACTTGGTAAAGGGAAGATCAGGTCATGCCATGGAAGACTATCTTGTTGCTCAATTTAAGCAAGTTGACAACAAAGAGTTGGGTTTATTTGCAATATTTGATGGCCACTCTGGTCACAGTGTACCTGATTACTTGAAGTCTCATTTGTTTGATAATATCTTGAAAGAGCCTAACTTCTGGACAGAACCTGCTGAGGCTGTTAAGAGAGCATATAGTATAACTGATTCTACTATTTTAGACAAATCAGGTGAATTGGGTAGAGGGGGTTCAACTGCGGTTACAGCAATATTGATCAACTGTTACAAGCTACTAGTGGCCAATATTGGGGATTCCCGGGCTGTCTTATGTAAGAATGGCGTAGCCAAACAACTATCGGTGGATCATGAACCAAGCATAGAAAGTGAAGATATAAAAAACAGAGGTGGTTTTGTGTCAAACTTCCCAGGGGATGTGCCACGTGTCGATGGTCAGTTGGCAGTGTCAAGGGCATTTGGTGACAAAAGCCTGAAGATACATTTGAGCTCAGAACCATATGTAACTGTGGAGATGATAGAAGATGATGCAGAGTTTCTTATACTAGCCAGTGATGGGTTATGGAAGGTAACATTTGAAAAATGAAGAAATCATGAGACACACATCTAATGAATGATTCCTTTTTTTTCTTTAAACACTCAAATACCTGCATATTCTGCACTAATAACATCTTTTTTATTGAAATTATTGAAGGTAATGTCAAATCAAGAAGCAGTTAGTGCTATCAGAGATGTTAAGGATGCTAGATCTGCAGCAAAGGTGCTTACTGAAGAAGCAAAGAACAGGAAAAGCTCAGATGATATCTCTTGCGTTGTTGTGAAATTTCAGTGATCAGTAAACTCACATAGTATATTTTTATCTACGAACTTGAAAGTGTAACATATACTTTAGTGTAATGTTGATACCTTTTAGGTGTTATTATGTCATGCCATTCAGTGTGTGATATTTAATCTTCTTTAATTTCATACAAATGAAACTGCTGAGAACGTGTTGTTTGATGTACCAATGTTCAAAAGGATTTAGTTTTGGATTGTGTAGACCAAAATAATTCGTATGAATGCAAGGAAGTTTGGTCAGTCTCTATCATCTTGAAAAGCCTTCTGGAAATTCATTAGCCATCCATTTGTGCCTCTGAAACACCTATGCTTGTATTTTGATACTTCACCTACTTGTATTTTGAGCGAAATATGTGTGAAGTATTCAGTGTTAGACTTATAATTTATATGTTGTTTTTATTAATGTTTT

Coding sequences of Glyma12g27340

Limit To All Plant Sequences

>Glyma12g27340.1   sequence type=CDS   gene model=Glyma12g27340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACGGGCAAAGAAATTTTTCATAAGATGAAGGAAAAAGTTTTGGGATCATCTGATCCCGATTCAGGTAAAGGAAAGAGCAAGATGAAGAAGCACATAACTCATGGCTTTCACTTGGTAAAGGGAAGATCAGGTCATGCCATGGAAGACTATCTTGTTGCTCAATTTAAGCAAGTTGACAACAAAGAGTTGGGTTTATTTGCAATATTTGATGGCCACTCTGGTCACAGTGTACCTGATTACTTGAAGTCTCATTTGTTTGATAATATCTTGAAAGAGCCTAACTTCTGGACAGAACCTGCTGAGGCTGTTAAGAGAGCATATAGTATAACTGATTCTACTATTTTAGACAAATCAGGTGAATTGGGTAGAGGGGGTTCAACTGCGGTTACAGCAATATTGATCAACTGTTACAAGCTACTAGTGGCCAATATTGGGGATTCCCGGGCTGTCTTATGTAAGAATGGCGTAGCCAAACAACTATCGGTGGATCATGAACCAAGCATAGAAAGTGAAGATATAAAAAACAGAGGTGGTTTTGTGTCAAACTTCCCAGGGGATGTGCCACGTGTCGATGGTCAGTTGGCAGTGTCAAGGGCATTTGGTGACAAAAGCCTGAAGATACATTTGAGCTCAGAACCATATGTAACTGTGGAGATGATAGAAGATGATGCAGAGTTTCTTATACTAGCCAGTGATGGGTTATGGAAGGTAATGTCAAATCAAGAAGCAGTTAGTGCTATCAGAGATGTTAAGGATGCTAGATCTGCAGCAAAGGTGCTTACTGAAGAAGCAAAGAACAGGAAAAGCTCAGATGATATCTCTTGCGTTGTTGTGAAATTTCAGTGA

>Glyma12g27340.2   sequence type=CDS   gene model=Glyma12g27340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACGGGCAAAGAAATTTTTCATAAGATGAAGGAAAAAGTTTTGGGATCATCTGATCCCGATTCAGGTAAAGGAAAGAGCAAGATGAAGAAGCACATAACTCATGGCTTTCACTTGGTAAAGGGAAGATCAGGTCATGCCATGGAAGACTATCTTGTTGCTCAATTTAAGCAAGTTGACAACAAAGAGTTGGGTTTATTTGCAATATTTGATGGCCACTCTGGTCACAGTGTACCTGATTACTTGAAGTCTCATTTGTTTGATAATATCTTGAAAGAGCCTAACTTCTGGACAGAACCTGCTGAGGCTGTTAAGAGAGCATATAGTATAACTGATTCTACTATTTTAGACAAATCAGGTGAATTGGGTAGAGGGGGTTCAACTGCGGTTACAGCAATATTGATCAACTGTTACAAGCTACTAGTGGCCAATATTGGGGATTCCCGGGCTGTCTTATGTAAGAATGGCGTAGCCAAACAACTATCGGTGGATCATGAACCAAGCATAGAAAGTGAAGATATAAAAAACAGAGGTGGTTTTGTGTCAAACTTCCCAGGGGATGTGCCACGTGTCGATGGTCAGTTGGCAGTGTCAAGGGCATTTGGTGACAAAAGCCTGAAGATACATTTGAGCTCAGAACCATATGTAACTGTGGAGATGATAGAAGATGATGCAGAGTTTCTTATACTAGCCAGTGATGGGTTATGGAAGGTAACATTTGAAAAATGA

Predicted protein sequences of Glyma12g27340

Limit To All Plant Sequences

>Glyma12g27340.1   sequence type=predicted peptide   gene model=Glyma12g27340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTGKEIFHKMKEKVLGSSDPDSGKGKSKMKKHITHGFHLVKGRSGHAMEDYLVAQFKQVDNKELGLFAIFDGHSGHSVPDYLKSHLFDNILKEPNFWTEPAEAVKRAYSITDSTILDKSGELGRGGSTAVTAILINCYKLLVANIGDSRAVLCKNGVAKQLSVDHEPSIESEDIKNRGGFVSNFPGDVPRVDGQLAVSRAFGDKSLKIHLSSEPYVTVEMIEDDAEFLILASDGLWKVMSNQEAVSAIRDVKDARSAAKVLTEEAKNRKSSDDISCVVVKFQ*

>Glyma12g27340.2   sequence type=predicted peptide   gene model=Glyma12g27340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTGKEIFHKMKEKVLGSSDPDSGKGKSKMKKHITHGFHLVKGRSGHAMEDYLVAQFKQVDNKELGLFAIFDGHSGHSVPDYLKSHLFDNILKEPNFWTEPAEAVKRAYSITDSTILDKSGELGRGGSTAVTAILINCYKLLVANIGDSRAVLCKNGVAKQLSVDHEPSIESEDIKNRGGFVSNFPGDVPRVDGQLAVSRAFGDKSLKIHLSSEPYVTVEMIEDDAEFLILASDGLWKVTFEK*

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